Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,570,826 C→A 100% D351Y (GAC→TAC)  yddB ← putative TonB‑dependent outer membrane receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,570,8260CA95.4% 648.9 / 21.3 218D351Y (GAC→TAC) yddBputative TonB‑dependent outer membrane receptor
Reads supporting (aligned to +/- strand):  ref base C (10/0);  new base A (108/99);  total (118/100)
Fisher's exact test for biased strand distribution p-value = 2.19e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 218 total aligned reads displayed.

AACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTCATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTGGTA  >  CP009273/1570680‑1570971
                                                                                                                                                  |                                                                                                                                                 
aaCATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAAt                                                                                                                                                 >  1:3352637/1‑149 (MQ=255)
 aCATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATg                                                                                                                                                >  2:1623043/1‑149 (MQ=255)
  cATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGa                                                                                                                                               <  2:3328681/149‑1 (MQ=255)
   aTTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGAt                                                                                                                                              >  2:2730837/1‑149 (MQ=255)
    ttACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATc                                                                                                                                             <  2:633370/149‑1 (MQ=255)
    ttACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATc                                                                                                                                             >  1:2897237/1‑149 (MQ=255)
     tACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCg                                                                                                                                            >  2:1047441/1‑149 (MQ=255)
      aCCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGt                                                                                                                                           >  1:2965479/1‑149 (MQ=255)
        ccACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGa                                                                                                                                         <  2:3439433/149‑1 (MQ=255)
         cACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGAc                                                                                                                                        <  2:1920829/149‑1 (MQ=255)
               gAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGtat                                                                                                                                  <  2:3845015/149‑1 (MQ=255)
                aaTTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGtata                                                                                                                                 >  2:3219867/1‑149 (MQ=255)
                          aGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAata                                                                                                                       >  2:1198379/1‑149 (MQ=255)
                          aGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAata                                                                                                                       <  1:332361/149‑1 (MQ=255)
                           gTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAatat                                                                                                                      <  1:2398247/149‑1 (MQ=255)
                           gTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAatat                                                                                                                      >  1:2488641/1‑149 (MQ=255)
                            tCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATg                                                                                                                     <  1:537354/149‑1 (MQ=255)
                            tCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATg                                                                                                                     <  1:228493/149‑1 (MQ=255)
                              cAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGATATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGAt                                                                                                                   <  1:769760/149‑1 (MQ=255)
                                ggCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATcc                                                                                                                 >  2:3391060/1‑149 (MQ=255)
                                 gCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATccc                                                                                                                <  2:218084/149‑1 (MQ=255)
                                   gtgtTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTTATGATCGTGACGGGTATAATCACTAATATGATCccaa                                                                                                              <  1:2499526/149‑1 (MQ=255)
                                   gtgtTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCccaa                                                                                                              >  1:1084592/1‑149 (MQ=255)
                                    tgtTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCccaac                                                                                                             >  1:549396/1‑149 (MQ=255)
                                          gAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACgg                                                                                                       <  1:89432/149‑1 (MQ=255)
                                            aGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACggtg                                                                                                     <  1:730410/149‑1 (MQ=255)
                                               tgtAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTa                                                                                                  <  1:3496459/149‑1 (MQ=255)
                                                gtAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTAc                                                                                                 >  1:3264064/1‑149 (MQ=255)
                                                  aaTTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGc                                                                                               <  2:1708941/149‑1 (MQ=255)
                                                  aaTTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGc                                                                                               <  2:3902055/149‑1 (MQ=255)
                                                    ttATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAg                                                                                             <  1:285716/149‑1 (MQ=255)
                                                    ttATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAg                                                                                             >  2:2638982/1‑149 (MQ=255)
                                                     tATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTCATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGt                                                                                            >  1:1139356/1‑149 (MQ=255)
                                                         tACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTgg                                                                                        >  1:62063/1‑149 (MQ=255)
                                                         tACAGACTGGGAAATGTGTCCTAATCCGCCTAGGGTGCAACGCCCTGTAATATCACGATATGTTCATGAAAGTTCGGTGTACCAGATGTATTTATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTgg                                                                                        <  2:2843195/149‑1 (MQ=255)
                                                            aGCCTGTGAAATGGGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGccc                                                                                     <  2:3057972/149‑1 (MQ=255)
                                                              ccTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCAt                                                                                   <  1:562924/149‑1 (MQ=255)
                                                                tGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGc                                                                                 >  1:3724059/1‑149 (MQ=255)
                                                                  ggAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGa                                                                               >  1:1586900/1‑149 (MQ=255)
                                                                    aaaTGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGc                                                                             >  2:2257311/1‑149 (MQ=255)
                                                                    aaaTGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGc                                                                             <  1:743936/149‑1 (MQ=255)
                                                                      aTGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTg                                                                           >  1:4068356/1‑149 (MQ=255)
                                                                           tCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATACTCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTAt                                                                      >  1:2269484/1‑149 (MQ=255)
                                                                           tCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTAt                                                                      >  2:707283/1‑149 (MQ=255)
                                                                           tCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTAt                                                                      >  1:2245893/1‑149 (MQ=255)
                                                                            ccTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATc                                                                     <  2:3911978/149‑1 (MQ=255)
                                                                            ccTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATc                                                                     <  2:1351907/149‑1 (MQ=255)
                                                                            ccTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATc                                                                     <  2:772604/149‑1 (MQ=255)
                                                                                aTCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCata                                                                 >  1:1674254/1‑149 (MQ=255)
                                                                                aTCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCata                                                                 >  1:3987526/1‑149 (MQ=255)
                                                                                aTCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCata                                                                 >  2:1386838/1‑149 (MQ=255)
                                                                                 tCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCatat                                                                >  2:3712436/1‑149 (MQ=255)
                                                                                  ccGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATc                                                               <  1:3789201/149‑1 (MQ=255)
                                                                                   cGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATcc                                                              <  2:551167/149‑1 (MQ=255)
                                                                                    gCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATccc                                                             >  2:3161616/1‑149 (MQ=255)
                                                                                     ccACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCa                                                            <  2:2587990/149‑1 (MQ=255)
                                                                                         gggTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGcc                                                        <  2:2038548/149‑1 (MQ=255)
                                                                                          ggTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCa                                                       >  2:471709/1‑149 (MQ=255)
                                                                                           gTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAg                                                      >  2:3410636/1‑149 (MQ=255)
                                                                                           gTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAg                                                      >  2:344886/1‑149 (MQ=255)
                                                                                              cAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGAcc                                                   >  2:1618597/1‑149 (MQ=255)
                                                                                              cAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGAcc                                                   <  2:3178154/149‑1 (MQ=255)
                                                                                               aaCGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCa                                                  >  1:803834/1‑149 (MQ=255)
                                                                                                   cccTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAgg                                              >  2:145652/1‑149 (MQ=255)
                                                                                                   cccTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAgg                                              >  2:622027/1‑149 (MQ=255)
                                                                                                      tGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGAtt                                           >  2:49159/1‑149 (MQ=255)
                                                                                                       gTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGAttt                                          <  1:2400446/149‑1 (MQ=255)
                                                                                                       gTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGAttt                                          <  1:1232089/149‑1 (MQ=255)
                                                                                                       gTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGAttt                                          <  2:2122399/149‑1 (MQ=255)
                                                                                                         aaTATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATttat                                        <  1:3903521/149‑1 (MQ=255)
                                                                                                          atatCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATttatt                                       >  1:3845626/1‑149 (MQ=255)
                                                                                                          atatCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATttatt                                       >  1:664460/1‑149 (MQ=255)
                                                                                                          atatCACCATATGTACATGAAAGTTCGGTGGACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATttatt                                       <  1:1836517/149‑1 (MQ=255)
                                                                                                             tCACCATATGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTAcc                                    <  2:2549200/149‑1 (MQ=255)
                                                                                                                  atatGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCAttt                               <  1:942938/149‑1 (MQ=255)
                                                                                                                   tatGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTc                              <  1:2095286/149‑1 (MQ=255)
                                                                                                                   tatGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTc                              >  1:1835059/1‑149 (MQ=255)
                                                                                                                   tatGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCGGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTc                              <  2:3291766/149‑1 (MQ=255)
                                                                                                                     tGTACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTcgc                            >  1:2772435/1‑149 (MQ=255)
                                                                                                                       tACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGa                          >  1:3055761/1‑149 (MQ=255)
                                                                                                                       tACATGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGa                          <  1:3744397/149‑1 (MQ=255)
                                                                                                                          aTGAAAGTTCGGTGTACCAGATGTCATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCa                       >  1:2317613/1‑149 (MQ=255)
                                                                                                                          aTGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCa                       >  2:2284970/1‑149 (MQ=255)
                                                                                                                           tGAAAGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAg                      <  2:3747093/149‑1 (MQ=255)
                                                                                                                               aGTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTg                  >  1:3524387/1‑149 (MQ=255)
                                                                                                                                gTTCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGc                 >  1:824890/1‑149 (MQ=255)
                                                                                                                                  tCGGTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCgg               <  1:49750/149‑1 (MQ=255)
                                                                                                                                    ggTGTACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGa             <  2:933401/149‑1 (MQ=255)
                                                                                                                                     gtgtACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGaa            <  1:3432184/149‑1 (MQ=255)
                                                                                                                                       gtACCAGATGTAATGATCGTTACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAgg          >  2:2447580/1‑149 (MQ=255)
                                                                                                                                       gtACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAgg          >  1:1777524/1‑149 (MQ=255)
                                                                                                                                       gtACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAgg          <  1:2610751/149‑1 (MQ=255)
                                                                                                                                        tACCAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGt         <  1:430737/149‑1 (MQ=255)
                                                                                                                                           cAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCt      >  2:2409487/1‑149 (MQ=255)
                                                                                                                                           cAGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCt      <  2:1818761/149‑1 (MQ=255)
                                                                                                                                            aGATGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGAGTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTg     >  2:3587359/1‑149 (MQ=255)
                                                                                                                                              aTGTAATGATCGTGACGGTTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTGGt   <  1:1993993/149‑1 (MQ=255)
                                                                                                                                              aTGTAATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTGGt   <  1:404879/149‑1 (MQ=255)
                                                                                                                                               tGTAATGCTCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTGGta  <  2:3671469/149‑1 (MQ=255)
                                                                                                                                               tGTAATGATCGTGACGGGTATACTCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTGGta  <  2:4035127/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
AACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTACAGCCTGGGAAATGTGTCCTAATCCGCCACGGGTGCAACGCCCTGTAATATCACCATATGTACATGAAAGTTCGGTGTACCAGATGTCATGATCGTGACGGGTATAATCACTAATATGATCCCAACCAACGGTGGTACGCAGTTTGGCCCATGCGAGCTGCGTATCCATATCCCATGCCAGACCATAGGATTTATTACCCATTTCGCGATCAGACTGCGGGAAGGTGCTGGTA  >  CP009273/1570680‑1570971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: