| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,590,878 | A→T | 100% | pseudogene (1367/5323 nt) | yneO ← | pseudogene, AidA homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,590,878 | 0 | A | T | 98.8% | 798.2 / ‑0.7 | 253 | pseudogene (1367/5323 nt) | yneO | pseudogene, AidA homolog |
| Reads supporting (aligned to +/- strand): ref base A (3/0); new base T (128/120); total (133/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 261 total aligned reads displayed.
TATTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCCACAT > CP009273/1590732‑1591023 | tatTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGcatccttc > 2:2960378/1‑149 (MQ=255) atTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCa < 2:2697638/149‑1 (MQ=255) atTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCa < 2:2698671/149‑1 (MQ=255) aaCTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTCCTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCGTCAggg > 2:3415679/1‑148 (MQ=255) aaCTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGt > 2:2351866/1‑149 (MQ=255) aCTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGtt > 2:2794729/1‑149 (MQ=255) tATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCa < 1:3868499/149‑1 (MQ=255) aTCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAg > 2:2943646/1‑149 (MQ=255) aTCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCGTCAGGTTCAg > 1:2675201/1‑149 (MQ=255) ccccTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAgtg > 2:2330449/1‑149 (MQ=255) tACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCg > 1:549853/1‑149 (MQ=255) aCCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGa < 2:3997827/149‑1 (MQ=255) cGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATa > 1:185546/1‑149 (MQ=255) cGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATa < 2:682942/149‑1 (MQ=255) ggAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATAc > 1:3324823/1‑149 (MQ=255) ggAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATAc < 1:3532186/149‑1 (MQ=255) ggCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgc > 2:75249/1‑149 (MQ=255) cATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgctt > 2:2230588/1‑149 (MQ=255) tttCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgc < 2:1677593/149‑1 (MQ=255) tttCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgc > 2:1645724/1‑149 (MQ=255) tttCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCAGTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgc < 2:3721121/149‑1 (MQ=255) ttCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCgcttgct < 1:744401/149‑1 (MQ=255) cctccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCttt > 1:2065545/1‑149 (MQ=255) tccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTAt < 2:1475393/149‑1 (MQ=255) tccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTAt < 2:2163438/149‑1 (MQ=255) ccGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATc < 1:3784193/149‑1 (MQ=255) gATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGc > 2:2147806/1‑149 (MQ=255) gATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGc > 2:2147777/1‑149 (MQ=255) aTAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGcc > 1:3407952/1‑149 (MQ=255) tAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGccc < 1:2499182/149‑1 (MQ=255) aaTCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaa > 1:1085866/1‑149 (MQ=255) ccATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaa > 2:303297/1‑149 (MQ=255) cATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaaa > 1:1794797/1‑149 (MQ=255) cATAGCCCGTGGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCaaaaaa < 2:2300372/149‑1 (MQ=255) aTAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAg > 2:2477811/1‑149 (MQ=255) tAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGt < 2:3777002/149‑1 (MQ=255) ccGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAata < 2:1278864/149‑1 (MQ=255) gTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAtt > 2:447677/1‑149 (MQ=255) ttGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAttt > 2:409794/1‑149 (MQ=255) ttGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAttt < 1:632506/149‑1 (MQ=255) tGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATAtttt < 2:2837529/149‑1 (MQ=255) aTTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCg > 1:3560893/1‑149 (MQ=255) ttAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGa < 1:2215821/149‑1 (MQ=255) aaGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATa > 2:3036125/1‑149 (MQ=255) aGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATAc < 2:3629552/149‑1 (MQ=255) gTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGaa < 1:3829634/149‑1 (MQ=255) tGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAAc > 2:1052247/1‑149 (MQ=255) ggCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACt < 1:1518200/149‑1 (MQ=255) cACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTa < 1:2865061/149‑1 (MQ=255) ttACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGcc > 2:3069075/1‑149 (MQ=255) tACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCa < 1:1149915/149‑1 (MQ=255) aCTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCAt < 1:3659406/149‑1 (MQ=255) aCTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCAt > 1:923786/1‑149 (MQ=255) cTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACAGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATc < 1:2179035/149‑1 (MQ=255) aCATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCt > 2:3343243/1‑149 (MQ=255) aTTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTaa < 2:1412947/149‑1 (MQ=255) tttACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAat > 1:1924071/1‑149 (MQ=255) aCGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATAtt < 2:1617831/149‑1 (MQ=255) aTACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAg > 1:3070560/1‑149 (MQ=255) aCCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGt < 2:1085866/149‑1 (MQ=255) ccGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGtt < 2:3948889/149‑1 (MQ=255) ccGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGtt < 2:2794003/149‑1 (MQ=255) cGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATAGCTAATATTGAGGttt < 2:1195782/149‑1 (MQ=255) cGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATAGCTAATATTGAGGttt < 2:3244235/149‑1 (MQ=255) cTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTcc < 1:3681684/149‑1 (MQ=255) aCCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGa > 2:2546054/1‑149 (MQ=255) cAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACg > 2:13093/1‑149 (MQ=255) aaaTTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGcc > 1:419084/1‑149 (MQ=255) aTTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCg > 1:2366561/1‑149 (MQ=255) ttACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGc > 1:1447419/1‑149 (MQ=255) aCCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCaa > 2:3556321/1‑149 (MQ=255) aCCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCaa < 1:2230588/149‑1 (MQ=255) cATTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCa > 1:938629/1‑149 (MQ=255) aTTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCaa > 1:2992168/1‑149 (MQ=255) aTTGATACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCaa > 1:3247854/1‑149 (MQ=255) tACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggtg > 2:1527006/1‑149 (MQ=255) tACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggtg < 1:2330449/149‑1 (MQ=255) tACCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggtg > 2:1526591/1‑149 (MQ=255) aCCCACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAAtggtgg > 2:3878890/1‑149 (MQ=255) cccACAGTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATggtggt < 1:4074273/149‑1 (MQ=255) gTATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGAc < 2:878116/149‑1 (MQ=255) tATCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACa > 2:2702531/1‑149 (MQ=255) tATCGAACGATGATGTAGCATCCTTCAGTTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACa > 2:1950387/1‑149 (MQ=255) aTCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACAt < 2:401554/149‑1 (MQ=255) tCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACAtt > 1:140880/1‑149 (MQ=255) tCGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACAtt > 2:2052052/1‑149 (MQ=255) cGAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTc < 2:4067246/149‑1 (MQ=255) gAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCt > 2:2509986/1‑149 (MQ=255) gAACGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCt < 2:2971175/149‑1 (MQ=255) aaCGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCtt < 2:779771/149‑1 (MQ=255) aCGATGATGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTa > 1:330709/1‑149 (MQ=255) gatgatGTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTAtt < 2:1478468/149‑1 (MQ=255) atgatgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTg > 1:437009/1‑149 (MQ=255) tgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCt < 1:735292/149‑1 (MQ=255) tgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCt < 2:3994056/149‑1 (MQ=255) tgTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCt > 1:1937653/1‑149 (MQ=255) gTCGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTc > 1:879634/1‑149 (MQ=255) cGCATCCTTCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTccc < 2:2654528/149‑1 (MQ=255) atccttcAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCcaca > 1:577053/1‑149 (MQ=255) atccttcAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCcaca < 1:215216/149‑1 (MQ=255) | TATTAACTATCCCCTTACCGGAGGCATTTCCTCCGATAAATCCATAGCCCGTTGAATTAAGGGTGGCACCATTACTGACATTTACGATACCGCTACCAAAATTACCGACATTGATACCCACAGTATCGAACGATGATGTCGCATCCATCAGGTTCAGTGTGCCGATACCGCTTGCTTTATCGCCCAAAAAAGTAATATTTTGCGATACGAACTTACCGCCATCGCTAATATTGAGGTTTCCGACGCCCGCAACACCAATGGTGGTATAGACATTCTTATTGACCTCCCACAT > CP009273/1590732‑1591023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |