| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,669,592 | G→T | 100% | F342L (TTC→TTA) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,669,592 | 0 | G | T | 97.3% | 687.2 / 7.7 | 219 | F342L (TTC→TTA) | pntB | pyridine nucleotide transhydrogenase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/5); new base T (116/97); total (117/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.94e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 219 total aligned reads displayed.
TAGCACCAATCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCGAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGCGGTGA > CP009273/1669447‑1669737 | tAGCACCAATCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTaaa < 1:3765168/149‑1 (MQ=255) aCCAATCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGca > 2:2893180/1‑149 (MQ=255) aCCAATCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGca > 2:622624/1‑149 (MQ=255) aTCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACAtt < 2:2027376/149‑1 (MQ=255) tCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTa > 2:3884613/1‑149 (MQ=255) cacatgTAGGGTTTCTGTATCTGCAAAGTAATAATTGATCTCGACCTTTTCCAGCACGTTGTAATAGGGTACTTTTGCTTCAGCCAGAATTAGGTTCATTTGCCCAGGAAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTaa < 1:3604317/144‑1 (MQ=255) cACCAGTCCGGTATCGTTATCAGAAATGTCATCATTGATATCGTCCATTTCCACCACGTTGTAATACGGTACTTTTGCTTCCGCCAGAAATACTTTAATATGTCCAGGAAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTaa < 1:1556023/149‑1 (MQ=255) cACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTaa < 2:2595640/149‑1 (MQ=255) aGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATAcc > 2:843698/1‑149 (MQ=255) gTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCa > 1:2677334/1‑149 (MQ=255) ggtatcggtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAg < 2:2486175/149‑1 (MQ=255) gtatcggtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAgc < 2:3405266/149‑1 (MQ=255) gtatcggtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAgc < 2:3405286/149‑1 (MQ=255) tatcggtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAgcg > 2:2126859/1‑149 (MQ=255) tatcggtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAgcg > 1:1581176/1‑149 (MQ=255) tatcggtatcAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAgag > 2:2332914/1‑147 (MQ=255) tcgttatcAGAAATGTAATATTTGATCTGGTCCATTTCCCGCACTTTGTAATACGTTACTTTTGCTTCAGCCAGCAATACGTTCATATGGCCAGGAAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAgcgcg < 1:1112699/149‑1 (MQ=255) ncAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAAttt > 1:3519337/2‑149 (MQ=255) cAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTtc > 2:544031/1‑149 (MQ=255) aGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTtct > 2:748241/1‑149 (MQ=255) gTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTaa < 2:3031993/149‑1 (MQ=255) gTCATCATTGATCTCGTCAATTTCCAGCACGATGTCATAGGTTACTTTTGCTTCAGCCAGCAATACGTTAATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCGAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTaa < 1:2909246/149‑1 (MQ=255) tcatcaTTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAAt > 1:3844281/1‑149 (MQ=255) catcatTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAAtg < 2:3844022/149‑2 (MQ=255) atcatTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAAttt > 1:4087691/1‑149 (MQ=255) tcatTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTc < 2:64474/149‑1 (MQ=255) catTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCa < 1:1675610/149‑1 (MQ=255) atTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCACA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAg > 1:3994861/1‑149 (MQ=255) atTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAg > 1:1017942/1‑149 (MQ=255) ttGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGc > 2:1162208/1‑149 (MQ=255) tGATCTCGTCCATTTCCAGCACGATGTCATACGGTAATTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCg < 1:3234623/149‑1 (MQ=255) aTCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGAc > 1:3784479/1‑149 (MQ=255) aTCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGAc > 1:3818959/1‑149 (MQ=255) aTCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGAc > 2:3678484/1‑149 (MQ=255) aTCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGAc < 2:1219444/149‑1 (MQ=255) tctcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACa < 2:843156/149‑1 (MQ=255) tctcGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACa > 2:1092007/1‑149 (MQ=255) cGTCCTTTTCCAGCACTTTGTAATAGGGTATTTTTGATTCAGCCAGAAATCCTTTAATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGAACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGa < 1:3679883/149‑1 (MQ=255) cGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGa > 1:1172094/1‑149 (MQ=255) ccATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGatat > 2:3595703/1‑149 (MQ=255) ccATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGatat > 2:1549367/1‑149 (MQ=255) aTTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTg > 2:2459216/1‑149 (MQ=255) tCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGAAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTgcgc < 1:2734687/149‑1 (MQ=255) tCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTAATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTgcgc < 1:2733653/149‑1 (MQ=255) cAGCACGATGTCATAGGTTACTTTTGCTTCAGCCAGAAATACGTTAATATGTCCCGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCt < 1:1995692/149‑1 (MQ=255) aTGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGAc < 2:3349741/149‑1 (MQ=255) aTGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCGAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGAc < 2:1613247/149‑1 (MQ=255) tGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACt > 1:1151975/1‑149 (MQ=255) tGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACt > 1:3330330/1‑149 (MQ=255) tGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACt > 2:4012366/1‑149 (MQ=255) tCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGc > 1:1601476/1‑149 (MQ=255) aTACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCCGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCa < 2:1896719/149‑1 (MQ=255) cgttagttttGCTTCAGCCAGCAATCCGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTGCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGc < 2:1430502/143‑1 (MQ=255) gTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCg > 2:311244/1‑149 (MQ=255) gTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCg > 1:3628207/1‑149 (MQ=255) ttttGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTAcc > 1:395869/1‑149 (MQ=255) ttGATTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTAcccc < 1:4112102/149‑1 (MQ=255) cTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGa > 2:3744558/1‑149 (MQ=255) ttCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAg > 2:3295242/1‑149 (MQ=255) tCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGt < 2:550623/149‑1 (MQ=255) agccagcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTaa > 2:706220/1‑149 (MQ=255) agccagcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTaa > 1:477708/1‑149 (MQ=255) gccagcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGTGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAAt > 1:3128591/1‑149 (MQ=255) gccagcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAAt > 1:1815719/1‑149 (MQ=255) gccagcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAAt < 2:2093572/149‑1 (MQ=255) cagcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGa > 1:583147/1‑149 (MQ=255) gcAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATc > 2:2384905/1‑149 (MQ=255) aaTACTTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCAc < 1:1708769/149‑1 (MQ=255) aaTACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCAc < 2:177940/149‑1 (MQ=255) aaTACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCAc < 2:1420193/149‑1 (MQ=255) tACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTg > 2:3661976/1‑149 (MQ=255) tCATATGTCCAGGCAAC‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATgg < 2:3143119/149‑1 (MQ=255) tCATATGACCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCCGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATgg < 2:3143943/149‑1 (MQ=255) atatGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGa > 2:3858874/1‑149 (MQ=255) tatGTCCAGGCAAA‑CGCCCCCCTACGGGTTGGATACCTAAACGAAATTTAATACCACGAGCGCTAATTTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAg < 2:397785/149‑1 (MQ=255) tGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGtt > 2:46950/1‑149 (MQ=255) gTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGttt < 2:3217020/149‑1 (MQ=255) tCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGtttt > 2:2528569/1‑149 (MQ=255) ccAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGttttt < 2:3200832/149‑1 (MQ=255) ccAGGCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGttttt > 2:3342974/1‑149 (MQ=255) cagCAAACCGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATCCCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTc < 1:1095062/147‑1 (MQ=255) ggCAAC‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTcag < 1:847300/149‑1 (MQ=255) gCAAA‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTcagc > 2:3785927/1‑149 (MQ=255) aaa‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTcagcag > 1:3368069/1‑149 (MQ=255) aa‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGt > 1:947309/1‑149 (MQ=255) aa‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGt > 2:2745093/1‑149 (MQ=255) aa‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTAAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGt < 1:2332914/149‑1 (MQ=255) aa‑CGCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAAGTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGt > 1:3005390/1‑149 (MQ=255) gCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTcc < 1:677116/149‑1 (MQ=255) gCCCCGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTcc < 1:2126906/149‑1 (MQ=255) cccGCGACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGc > 1:1375733/1‑149 (MQ=255) ccGCGACCGGGTGGATACCTAAACCCACATTAATACCACGAGCGCGCAATGTCACAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCt < 1:2557674/149‑1 (MQ=255) cgcgACCGGGTGGATACCTAAACGCACATTAATACCCCGAGCGCGCAATTTCACCGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTg < 1:1945143/149‑1 (MQ=255) gACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGtct > 2:4040768/1‑149 (MQ=255) gACCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGtct > 2:4040748/1‑149 (MQ=255) aCCGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGtctc > 1:2823018/1‑149 (MQ=255) ccGGGTGGATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCAGCTGTctct < 1:868415/149‑1 (MQ=255) ggATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGACTGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGCg > 2:3547175/1‑149 (MQ=255) gATACCTAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGCgg > 2:438271/1‑149 (MQ=255) aCCTAAACGCACATTTATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGCGGTGa < 2:3519337/149‑1 (MQ=255) | TAGCACCAATCACCAGTACGGTATCGGTATCAGCAAAGTCATCATTGATCTCGTCCATTTCCAGCACGATGTCATACGGTACTTTTGCTTCAGCCAGCAATACGTTCATATGTCCAGGCAAA‑CGCCCCGCGACCGGGTGGATACCGAAACGCACATTAATACCACGAGCGCGCAATTTCTCAGTAATTTCAGCGACAGGATATTGCGCCTGCGCGACTGCCATGCCGTACCCCGGAGTAATGATCACTGAATGGGAGTTTTTCAGCAGTTCCGCTGTCTCTTCTGCGGTGA > CP009273/1669447‑1669737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |