Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 1,812,514 | C→A | 100% | D82Y (GAT→TAT) | chbF ← | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 1,812,514 | 0 | C | A | 99.1% | 702.4 / ‑1.8 | 212 | D82Y (GAT→TAT) | chbF | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (95/115); total (96/116) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 212 total aligned reads displayed.
AAAAATCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATCAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTCGCTG > CP009273/1812368‑1812659 | aaaaaTCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAg > 1:2178185/1‑149 (MQ=255) aaaTCACCTGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCGAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCa < 2:247167/149‑1 (MQ=255) aaaTCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCa < 2:1587424/149‑1 (MQ=255) aaaTCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCa < 1:3416/149‑1 (MQ=255) aTCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATc < 2:3125779/149‑1 (MQ=255) tCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCt > 1:1855457/1‑149 (MQ=255) cACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCtt < 1:2033566/149‑1 (MQ=255) cACCGGAAGGGTACGAAGACCTTAAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCtt < 1:392189/149‑1 (MQ=255) ccGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTc > 1:907148/1‑149 (MQ=255) ggAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTTATGTAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCaa < 2:2275911/149‑1 (MQ=255) ggAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATCAGCATCTTTCaa < 1:3807565/149‑1 (MQ=255) gAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAAt > 2:855904/1‑149 (MQ=255) gAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAAt < 2:2649130/149‑1 (MQ=255) aaTGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATg > 2:3728794/1‑149 (MQ=255) aaTGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATg > 1:1086620/1‑149 (MQ=255) aTGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGc < 1:1465506/149‑1 (MQ=255) aTGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGc > 2:940482/1‑149 (MQ=255) ggTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCtt > 1:3154552/1‑149 (MQ=255) gTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTc > 1:3374078/1‑149 (MQ=255) cGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTcgcg > 1:733587/1‑149 (MQ=255) gCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCgcgg > 1:1749461/1‑149 (MQ=255) gACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGa < 2:3647937/149‑1 (MQ=255) aCCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGAt > 1:1107830/1‑149 (MQ=255) ccTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATc < 2:3242718/149‑1 (MQ=255) cTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCGTCGCGGCGATcc > 1:2161723/1‑149 (MQ=255) tttAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCa > 1:3782474/1‑149 (MQ=255) tttAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCa > 1:1850186/1‑149 (MQ=255) aacaaacCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGt < 2:716411/149‑1 (MQ=255) aacaaacCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGt < 2:1513172/149‑1 (MQ=255) aacaaacCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGt > 2:1267601/1‑149 (MQ=255) acaaacCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGtt > 2:4034374/1‑149 (MQ=255) acCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGGAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTtat > 1:44938/1‑149 (MQ=255) cgcccgcGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATaa < 1:642178/149‑1 (MQ=255) gcgcCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCtt > 1:3985289/1‑149 (MQ=255) cgcCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTc < 1:3612709/149‑1 (MQ=255) ccGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCAt < 1:2829275/149‑1 (MQ=255) ccGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCAt < 2:3804171/149‑1 (MQ=255) gTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCACCGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGATTTATAAAGCTTCATCg > 2:2777563/1‑149 (MQ=255) gTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCg > 2:646879/1‑149 (MQ=255) gTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCg < 1:1194021/149‑1 (MQ=255) ttGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCgg > 2:2085516/1‑149 (MQ=255) ttGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCgg < 2:3841359/149‑1 (MQ=255) ccTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCa < 2:3842556/149‑1 (MQ=255) cTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAg > 1:2929968/1‑149 (MQ=255) gACCAAGATAACCATGACTTAATGGAATACGTTCATCCAATTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCg > 2:1048994/1‑149 (MQ=255) aCCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGt > 1:452538/1‑149 (MQ=255) ccAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGtt > 2:1861347/1‑149 (MQ=255) ccAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGtt > 1:109351/1‑149 (MQ=255) cAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTa < 1:1207707/149‑1 (MQ=255) cAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTa < 2:1224886/149‑1 (MQ=255) cAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTa < 1:3254576/149‑1 (MQ=255) aaGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTat > 2:2890537/1‑149 (MQ=255) aCCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTatcaatca < 2:848356/149‑1 (MQ=255) aCCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTatcaatca < 1:2661712/149‑1 (MQ=255) ccATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAatcat > 2:4095914/1‑149 (MQ=255) ccATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAatcat > 2:287552/1‑149 (MQ=255) aTGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATcc < 2:3456929/149‑1 (MQ=255) tGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTACCGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCg > 2:2933424/1‑149 (MQ=255) gACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGt > 1:16469/1‑149 (MQ=255) ttAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTgg < 1:708615/149‑1 (MQ=255) ttAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTgg > 2:3190998/1‑149 (MQ=255) ttAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTgg < 1:3705952/149‑1 (MQ=255) aTGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCag > 2:913315/1‑149 (MQ=255) aTGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCag > 1:3544716/1‑149 (MQ=255) aTGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCag > 2:2970964/1‑149 (MQ=255) gAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAgaga < 1:3571857/149‑1 (MQ=255) aaTACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGAt < 2:1855457/149‑1 (MQ=255) aaTACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGAt < 2:2811950/149‑1 (MQ=255) aaTACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTACCAATCATCCGTTGGCAGAGAt < 2:3593713/149‑1 (MQ=255) aTACGTTCATCCAGTTCACGCGCCGGTACTTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATc > 1:116430/1‑149 (MQ=255) tACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCg > 2:3200542/1‑149 (MQ=255) tACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCg > 2:3200758/1‑149 (MQ=255) gTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGaaa > 2:1113148/1‑149 (MQ=255) gTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGaaa < 2:1574164/149‑1 (MQ=255) ttCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGaaaa < 1:2937517/149‑1 (MQ=255) ttCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGaaaa > 2:122244/1‑149 (MQ=255) ttCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGaaaa > 1:31886/1‑149 (MQ=255) tCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAaat < 2:1629026/149‑1 (MQ=255) ccAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAaataatn < 1:1267600/149‑2 (MQ=255) gTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATcc < 2:2624039/149‑1 (MQ=255) ttCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTTACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCCTCCGTTGGCAGAGATCGAAAATAATATCCa < 2:1127113/149‑1 (MQ=255) ttCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCa < 1:940504/149‑1 (MQ=255) gcgcCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTc > 1:2715370/1‑149 (MQ=255) aaTTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGTCAGAGATCGAAAATAATATCCAGTTTCGGTTTacc < 2:1098167/149‑1 (MQ=255) aTTGGCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTacca < 1:3142180/149‑1 (MQ=255) gCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCtt > 1:402594/1‑149 (MQ=255) gCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCtt < 2:1778350/149‑1 (MQ=255) gCCAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCtt < 2:3782474/149‑1 (MQ=255) cAACGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCg > 2:2553228/1‑149 (MQ=255) aCGCGCAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGAc > 1:3758378/1‑149 (MQ=255) gcgcAGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACAt > 2:1376729/1‑149 (MQ=255) aGTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATccac > 1:3015/1‑149 (MQ=255) gTTGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATccacc > 1:1311080/1‑149 (MQ=255) tGGGTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAg < 2:2175089/149‑1 (MQ=255) ggTAGTAACGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGcc > 2:3623345/1‑149 (MQ=255) aCGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTc < 2:377611/149‑1 (MQ=255) aCGAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTc < 2:2447821/149‑1 (MQ=255) gAAATAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTCGc < 1:2613105/149‑1 (MQ=255) aaaTAAGCATCTTTCAATGCGTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTCGCt < 2:1940035/149‑1 (MQ=255) aaTAAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTCGCTg > 2:3392958/1‑149 (MQ=255) | AAAAATCACCGGAATGGTACGCAGACCTTTAAACAAACCGCCCGCGCCGTTGGTTTCCTGACCAAGATAACCATGACTTAATGGAATACGTTCATCCAGTTCACGCGCCGGTAATTGGCCAACGCGCAGTTGGGTAGTAACGAAATCAGCATCTTTCAATGCTTCGCGGCGATCCAGCGTTTTATAAAGCTTCATCGGGACGCCAGCGTTATCAATCATCCGTTGGCAGAGATCGAAAATAATATCCAGTTTCGGTTTACCACCTTCGACATCCACCAGCCATAATTCGCTG > CP009273/1812368‑1812659 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |