Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 1,874,924 | T→A | 100% | V31V (GTA→GTT) | leuE ← | leucine efflux protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 1,874,924 | 0 | T | A | 99.2% | 788.1 / ‑2.7 | 239 | V31V (GTA→GTT) | leuE | leucine efflux protein |
Reads supporting (aligned to +/- strand): ref base T (0/2); new base A (92/145); total (92/147) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.24e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 245 total aligned reads displayed.
TACAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGTACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAATATGC > CP009273/1874780‑1875067 | aCAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACaaa > 2:1617984/1‑149 (MQ=255) aCAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACaaa < 2:2183311/149‑1 (MQ=255) aaTGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGaacaaaca > 1:4108846/1‑149 (MQ=255) aaTGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGaacaaaca < 1:431828/149‑1 (MQ=255) aaTGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGaacaaaca < 1:2451596/149‑1 (MQ=255) aTGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAg > 1:3995485/1‑149 (MQ=255) aTGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAg > 1:2688890/1‑149 (MQ=255) aTGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAg > 1:1957119/1‑149 (MQ=255) tGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTa < 2:1836454/149‑1 (MQ=255) aataatATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCNGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTNGAGAACAAACAGGGTAtt < 2:4050818/149‑1 (MQ=255) ataataTCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTAttt < 2:1277391/149‑1 (MQ=255) natatCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTgg > 1:1950459/2‑149 (MQ=255) atatCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGc > 1:449869/1‑149 (MQ=255) tatCGGGGTGGTCGTAATTAATGTCGCCACTCCAGCCCATGCCAGCAACATCAATACCGCATCGCCAATCAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCGATTTTTGAGAACAAACAGGGTATTTGGcc > 2:2796861/1‑149 (MQ=255) atCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGccc < 2:534213/149‑1 (MQ=255) atCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGccc > 1:4002902/1‑149 (MQ=255) atCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGccc > 1:3508205/1‑149 (MQ=255) atCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGccc < 1:2815788/149‑1 (MQ=255) tCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCt < 1:2074568/149‑1 (MQ=255) tCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCt < 2:842824/149‑1 (MQ=255) cGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTg < 1:2846248/149‑1 (MQ=255) gggTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAAAAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTATTGAGAACAAACAGGGTATTTGGCCCTGGc > 1:1649086/1‑149 (MQ=255) tggtCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCAcc < 1:1310973/149‑1 (MQ=255) tggtCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCAcc > 2:1093483/1‑149 (MQ=255) gtCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGATATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCaa < 1:3604434/149‑1 (MQ=255) ttaattaaTGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAacac < 1:1228751/149‑1 (MQ=255) taattaatGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAAcaca > 1:3076461/1‑149 (MQ=255) aattaatGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACaa < 1:2385229/149‑1 (MQ=255) aatGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATaaa < 1:4050360/149‑1 (MQ=255) atGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATaaaa > 1:693467/1‑149 (MQ=255) atGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATaaaa > 1:311356/1‑149 (MQ=255) tGTCGCCACTCCAGCCCAAGCCAGAAAAATCAATACCGCAACGCAAATAAAAACACCGCAGGACACAAGATAAAAGCCTTTCATACCGCTACTGACGCTATTATTGAGAACAAACATGGTATTTGTCACTGGCACCAACaaaaaaaaaa > 1:257530/1‑149 (MQ=255) gTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACACTAAAAAt > 2:2147853/1‑149 (MQ=255) gTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAAt > 1:2658908/1‑149 (MQ=255) cACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGccc > 2:2401099/1‑149 (MQ=255) ccAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAAc > 2:733330/1‑149 (MQ=255) ccAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAAc < 1:2719528/149‑1 (MQ=255) gCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAg > 1:2312217/1‑149 (MQ=255) ccATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGAt < 2:1889543/149‑1 (MQ=255) aTGCCATAAACATCAATACCGCATCGCAAATAAATACTCCTCAGGCCGCAATATAAACTCCTTTCATACAGCTACTGACGCTATTTTTGATAACAAACTGGGTATTTGGCACTGGCACCAAAACAATAAAAATGGACCCAACCAGATAg < 2:3627229/149‑1 (MQ=255) aTGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAg > 1:553311/1‑149 (MQ=255) cAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTcc < 2:632402/149‑1 (MQ=255) aGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCa > 1:2725249/1‑149 (MQ=255) aGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCa > 1:524770/1‑149 (MQ=255) gAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAg < 2:1799461/149‑1 (MQ=255) gAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAg > 2:31911/1‑149 (MQ=255) gAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAg > 1:2019757/1‑149 (MQ=255) aCATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGTACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTaa < 1:2177327/149‑1 (MQ=255) aCATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGTACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTaa < 1:100027/149‑1 (MQ=255) aaTACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAg > 1:261970/1‑149 (MQ=255) aaTACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAg < 1:2370957/149‑1 (MQ=255) tACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGTTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACAAGATAGGTCCAGTAATTCAGaa > 1:3326296/1‑149 (MQ=255) tACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGaa < 1:385974/149‑1 (MQ=255) cGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAAccc < 2:1902577/149‑1 (MQ=255) cGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAAccc < 2:4100271/149‑1 (MQ=255) gCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAAcccc < 2:2441841/149‑1 (MQ=255) gCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAAcccc < 2:3301402/149‑1 (MQ=255) tCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTa < 1:1054902/149‑1 (MQ=255) gCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTAtt < 1:2891546/149‑1 (MQ=255) cAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCa < 1:1454863/149‑1 (MQ=255) cAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCa < 1:1617934/149‑1 (MQ=255) ataaataCACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGc < 2:2728524/149‑1 (MQ=255) taaataCACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCg < 2:2332494/149‑1 (MQ=255) aataCACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGaa < 2:3508205/149‑1 (MQ=255) aataCACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGaa < 2:544662/149‑1 (MQ=255) aataCACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGaa > 2:2075840/1‑149 (MQ=255) acacCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAacac < 1:2624514/149‑1 (MQ=255) cacCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAAcaca < 2:947409/149‑1 (MQ=255) cacCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAAcaca < 1:2777248/149‑1 (MQ=255) cGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTa < 2:3076461/149‑1 (MQ=255) ggCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACct > 2:2044190/1‑149 (MQ=255) ggCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACct < 1:898261/149‑1 (MQ=255) ggCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACct < 1:1155604/149‑1 (MQ=255) cctcAAGATAACCGCCTTTCATAAAGCTACTGACTCTATTTTTGAGAACAATCAGTGTATTTGGCCCTGGCACCAAAACAATAACAATGGCACCAACCAGATTGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACAGATTAACctct < 2:1725366/146‑1 (MQ=255) cGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCtt < 1:3908586/149‑1 (MQ=255) cGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCtt < 1:2780220/149‑1 (MQ=255) gCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCttt < 2:425949/149‑1 (MQ=255) gCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCAAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCttt < 2:420290/149‑1 (MQ=255) aGATAACCTCCTTTCATACCGCTTCTGACTCTATTTTTGATAACAAACAGGGTATTTGGCCCTGTCACCAACACAATATAAATGGCCCCACACATATAGGTCCAGTAATTCAGAACCCCGTATTCTGCGAACACATTAACCTCTTTAAt < 2:257530/149‑1 (MQ=255) aCCGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCt < 1:2834137/149‑1 (MQ=255) cGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCttt < 2:2636313/149‑1 (MQ=255) cGCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCttt < 2:2635562/149‑1 (MQ=255) gCCTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTc > 2:1482179/1‑149 (MQ=255) cTTTCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGa < 2:1098366/149‑1 (MQ=255) tttCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGAt < 2:29221/149‑1 (MQ=255) ttCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATc < 2:2914000/149‑1 (MQ=255) tCATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCa < 2:88995/149‑1 (MQ=255) cATACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCAt < 1:3688815/149‑1 (MQ=255) tACCGCTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATgc < 1:3375044/149‑1 (MQ=255) cTACTGACGCTATTTTTGAGAACAAACATGGTATTTGGCCCTTGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTTACCTCTTTAATTATCTTTCGATCATGCGCGAt < 2:500564/149‑1 (MQ=255) cTACTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGAt < 1:1093485/149‑1 (MQ=255) aCTGACGCTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTa < 1:3280001/149‑1 (MQ=255) cTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGa > 2:722729/1‑149 (MQ=255) cTATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGa > 2:1564913/1‑149 (MQ=255) tATTTTTGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGaa > 1:463316/1‑149 (MQ=255) aTTTTTGAGAACACACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAat < 1:2266943/149‑1 (MQ=255) ttttGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAatat < 1:555565/149‑1 (MQ=255) ttGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAATATGc > 2:3153327/1‑149 (MQ=255) ttGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAATATGc < 2:2473785/149‑1 (MQ=255) ttGAGAACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAATATGc > 2:3770019/1‑149 (MQ=255) | TACAATGTTGAATAATATCGGGGTGGTCTTAATTAATGTCGCCACTCCAGCCCATGCCAGAAACATCAATACCGCATCGCCAATAAATACACCGCAGGCCGCAAGATAACCGCCTTTCATACCGCTACTGACGCTATTTTTGAGTACAAACAGGGTATTTGGCCCTGGCACCAACACAATAAAAATGGCCCCAACCAGATAGGTCCAGTAATTCAGAACCCCGTATTCAGCGAACACATTAACCTCTTTAATTATCTTTCGATCATGCGCGATTAAAGGTGAATATGC > CP009273/1874780‑1875067 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |