| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,109,283 | C→G | 8.8% | R32P (CGA→CCA) | wcaM ← | colanic acid biosynthesis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,109,283 | 0 | C | G | 8.8% | 595.3 / 3.4 | 203 | R32P (CGA→CCA) | wcaM | colanic acid biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base C (55/121); new base G (18/3); total (79/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.85e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 214 total aligned reads displayed.
GTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATCACCT > CP009273/2109136‑2109431 | gTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTcg > 2:1277562/1‑149 (MQ=255) ttACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTcgggc < 1:2821387/149‑1 (MQ=255) ccGGGAGGGATAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTcgggcggg < 2:1009662/149‑1 (MQ=255) ggagggaTAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGCTCCAGTCGTGGGGGGTGTAGTC‑GTTGATGGTAACGCTTTGTcgggcggggcg > 1:1316664/1‑146 (MQ=255) ggagggaTAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAg > 1:1316979/1‑149 (MQ=255) gagggaTAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGGTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAgc > 1:1693333/1‑149 (MQ=255) agggaTAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTcgggcggggcgcg > 2:1524625/1‑144 (MQ=255) gggaTAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTTATTTTAAAGCTTTTTCGGGGGGGAAgcgc > 1:1862174/1‑149 (MQ=255) gaTAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAAAGCTTTGTGGGGCGGGGAgcgcgc > 1:1271399/1‑149 (MQ=255) tAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCgg < 1:2340171/149‑1 (MQ=255) aaGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTCGGTTATTTTTAAC‑CCTTGTGGGGGGGGGCGCGCGCGGGc > 1:717057/1‑149 (MQ=255) aaGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGGTGTAGTC‑GTGTATGTTAAACCTTTTTGGGGGGGGTAGCGCGCGGGc > 1:845995/1‑149 (MQ=255) ggTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAgggg < 2:2142405/149‑1 (MQ=255) ggTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAgggg < 1:2546808/149‑1 (MQ=255) gtgtTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGt < 2:1060640/149‑1 (MQ=255) ttGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATTTTAACGCTTTTTCGGGCGGGAAGCGCGCGGGCGAAATGGGTAtt > 1:1032647/1‑148 (MQ=255) atatTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGGGGGGTGTAGTA‑GTTAATTTTAACGCTTTTTGCGGCGGGACGCCCGCGGGCGCAAGGGGTATtgag > 1:1036428/1‑149 (MQ=255) gTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAAGGGTATGGAGGAAgg < 2:1486531/149‑1 (MQ=255) gTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGGGGGGTGTAGTC‑GTTAATGTTAAAGCGTTGTGGGGGGGGGAGCGCGCGGGGGGAACGGGGGTGGGGGGAgg > 1:1193663/1‑149 (MQ=255) caAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGTTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAg < 1:835966/149‑1 (MQ=255) aaCCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGGGGGTTGTAGTC‑GTGAATGTTAACGCGTTGTGGGGGGGGTCGCGCGCGGGCGCAAGGGGGTTGGGGGGAGGCCAgcg > 1:588938/1‑149 (MQ=255) aCCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAgcgc < 1:2887951/149‑1 (MQ=255) ccAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGcc < 1:1477739/149‑1 (MQ=255) aatcgtgcagggtCGACGTCTTTTTGCCCTTGGGTGATGGATTGTTTTTATGAGGCTATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACTCTTTTTCGGGGGGGATTGGGGCGGGCGACAGGGGTATGGAGGAAGGCAAGCGCCGa < 2:621328/143‑1 (MQ=255) tCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTTTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGc > 2:852241/1‑149 (MQ=255) gcaggcaCGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCGTTTTCGGGCGGGCAGCGCGCGGGCGAAAGGGGTATGGCGGGAGGCAAGCGCCGCGCTTGc > 2:768975/1‑149 (MQ=255) aggcaCGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAATC‑GTTATTGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCg < 1:3971150/149‑1 (MQ=255) aggcaCGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGGGGGGTGTAGTC‑GTGTATGTTAACGCTTTGTGGGGCGGGGAGCGCGCGGGCGGAAGGGGGTTGGGGGGAGGCCAGCGCCCCGCTTGGCg > 1:3301476/1‑149 (MQ=255) gacgacTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGGGGGTTGTAGTC‑GTTAATGTTAAAGCTTTTTGGGGCGGGAAGCGCGCGGGCGAAAGGGGTAAGGGGGAAGGCAAGCGCCGAGCTTGCCGTCAGGa > 2:1859414/1‑149 (MQ=255) acgacTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGaa < 1:2693460/149‑1 (MQ=255) acTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GGTGGTTTTAAAGCTTTTTGGGGGGGGGCGCGCGCGGGGGCAACGGGGGTGGGGGGCGGCAAGCGCCCCGCGTGCCGGCAGGGAccg > 1:2439055/1‑147 (MQ=255) acTGTGGGCCCTTCGCTGAAGGTTTGTTTAAATGCGGCGACCCCGTCGTGGGGGTTGTTGTC‑GTTACTGTTACCGGTTTGTGGGGCGGGACGCGCGCGGGCGAAAGGGGTTTGGAGGACGGCAAGCGCCGAGCTTGCCGTCAGGAACGt < 1:2308/149‑1 (MQ=255) tttGCCCTTCGCTTATGGCTTTTTTAAATGAGGCTATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGt < 1:2237438/149‑1 (MQ=255) tttGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTGAATGTTAAAGCTTTGTCGGGCGGGCAGCGCGCGGGGGACAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGt > 2:3680898/1‑149 (MQ=255) ttGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTc < 2:3872442/149‑1 (MQ=255) ccTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAATGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGga < 1:445367/149‑1 (MQ=255) ccTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGga < 2:3191437/149‑1 (MQ=255) ttCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGgaga < 2:640389/149‑1 (MQ=255) cGCTGAAGGCGTGTTTAAATGAGGCGATCCAGTGGTGTGGGTTGTTGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAACGGGGTATGGAGGACGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGt < 1:354252/149‑1 (MQ=255) gCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTACTGTTACCGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGACGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGtt < 1:1524625/149‑1 (MQ=255) gCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGtt < 2:2204282/149‑1 (MQ=255) gCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGtt < 2:1808717/149‑1 (MQ=255) gCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTAGGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGtt < 2:2756990/149‑1 (MQ=255) cTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGttt < 2:1706471/149‑1 (MQ=255) aaGGCTTTTTTAAATGAGGCGATCCAGTGGTGGGGGTTTTTGTC‑GTTAATGTTAACGGTTTGGGGGGGGGGAAGCGCGCGGGCTAACGGGGTAGGGAGGAAGCCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGtttttt < 1:708975/149‑1 (MQ=255) aaGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGtttttt < 2:1463409/149‑1 (MQ=255) tggCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAACGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTa < 1:3104688/148‑1 (MQ=255) aGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTa > 2:4078902/1‑149 (MQ=255) gCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTaaa < 2:1039625/149‑1 (MQ=255) tGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATgg < 1:3754623/149‑1 (MQ=255) tGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATgg < 2:1507989/149‑1 (MQ=255) aaTAAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTTTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCATGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAAAGGCATGCg > 2:3087277/1‑149 (MQ=255) aGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAAAGCTTTTTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATTGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTtct > 2:669651/1‑149 (MQ=255) ggCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTtctc < 1:463346/149‑1 (MQ=255) ggCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTtctc < 2:3394726/149‑1 (MQ=255) ggCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTtctc < 2:1344277/149‑1 (MQ=255) gCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAACGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTctcc < 1:2666404/149‑1 (MQ=255) gCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTctcc < 1:1799278/149‑1 (MQ=255) gATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTctcctc < 2:1193663/149‑1 (MQ=255) cAGTCGTGTGGGTTGTAGTC‑GTTAATTTTAACGCTTTGTCGGGCGGGAATCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTTCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATTGCAAGCGTTCTCCTCtata > 2:1928022/1‑149 (MQ=255) cAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCtata < 2:82395/149‑1 (MQ=255) cAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAAAGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCtata > 2:3371700/1‑149 (MQ=255) tCGTGTGGGTTGTAGTC‑GTTAATGTTAAACCGTTGTCCGGCGGGAATCGCGCGGGCGAAAGGGGTATGGAGGAAAGCAAGCGCCGAGCATTCCGTCAGGAACGTGCGTAGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTATATAAAg > 2:1749076/1‑149 (MQ=255) cGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGc < 1:3500245/149‑1 (MQ=255) tgtgGGTTGTAGTC‑GTTAATGTTAACGCTTTTTAGGGCGGGAAGCGCGCGGGCGAAAGGGGGATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATTGCATTCGTTCTCCTCTATAAATCCt > 1:1982914/1‑149 (MQ=255) tgtgGGTTGTAGTC‑GTTAATGTTAAAGCTTTGTAGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCCAGCGCCGAGCTTGCCGTCACGAACCTGCGTCGGGAGAGTTTTTTAAATTGCATGCGTTCTCCTCTATAAAGCCt > 1:569500/1‑149 (MQ=255) gtgGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTg < 2:1775742/149‑1 (MQ=255) gtgTTGTAGTG‑GTTAATGTTAACGCTTTGTCGGGCGGGATGCGCGCGGGCGAAAGGGGTAGGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTATATGGCATTCGTTCTCCTCTATAAAGCCTgca < 2:3017231/147‑1 (MQ=255) tGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGCGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCaa < 1:1633193/149‑1 (MQ=255) tGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCaa < 2:1862174/149‑1 (MQ=255) gTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTTCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAg > 1:650460/1‑149 (MQ=255) tAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGc < 1:242052/149‑1 (MQ=255) aGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGACGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCt < 2:1316664/149‑1 (MQ=255) aGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGACGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCt < 1:775409/149‑1 (MQ=255) aGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCt > 1:2522364/1‑149 (MQ=255) aGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCt > 1:3003962/1‑149 (MQ=255) aGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCt < 2:588938/149‑1 (MQ=255) gTC‑GTTAATGTTAACGCTTTGTCGGGCGGGACGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTg > 2:376951/1‑149 (MQ=255) c‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGc < 2:3452917/149‑1 (MQ=255) gTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCg > 2:3309720/1‑149 (MQ=255) ttAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGa > 2:2445044/1‑149 (MQ=255) tAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGACATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAg < 2:4079552/149‑1 (MQ=255) aTGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGtt > 1:2988683/1‑149 (MQ=255) tGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTtc < 2:1423106/149‑1 (MQ=255) tGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTtc < 1:4101425/149‑1 (MQ=255) gTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTtct < 2:535390/149‑1 (MQ=255) gTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTtct < 2:1271399/149‑1 (MQ=255) ttAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTtctc > 2:2211625/1‑149 (MQ=255) tAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCg > 2:2714912/1‑149 (MQ=255) aaCGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGa < 2:910234/149‑1 (MQ=255) aaCGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGa < 1:810034/149‑1 (MQ=255) aaCGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGa > 1:3187291/1‑149 (MQ=255) aCGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGAt < 1:97382/149‑1 (MQ=255) gCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTg > 1:1056611/1‑149 (MQ=255) ttGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATc < 1:2566916/149‑1 (MQ=255) ttGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTAGAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATc < 2:194354/149‑1 (MQ=255) tGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATCa < 2:1346288/149‑1 (MQ=255) tGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATCa < 1:2534035/149‑1 (MQ=255) cgggcgggAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATCACct > 1:1919913/1‑149 (MQ=255) cgggcgggAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATCACct > 1:1556480/1‑149 (MQ=255) | GTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCACAAACCAATCCGGCAGGCACGACGACTGTTTGCCCTTCGCTGAAGGCTTGTTTAAATGAGGCGATCCAGTCGTGTGGGTTGTAGTC‑GTTAATGTTAACGCTTTGTCGGGCGGGAAGCGCGCGGGCGAAAGGGGTATGGAGGAAGGCAAGCGCCGAGCTTGCCGTCAGGAACGTGCGTCGGGAGAGTTTTTTAAATGGCATGCGTTCTCCTCTATAAAGCCTGCAGCAAGCTGGCGAGTTCTCGATTGATCACCT > CP009273/2109136‑2109431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |