| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,404,772 | C→A | 100% | A20A (GCG→GCT) | yfbS ← | putative transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,404,772 | 0 | C | A | 98.4% | 790.1 / 2.9 | 243 | A20A (GCG→GCT) | yfbS | putative transporter |
| Reads supporting (aligned to +/- strand): ref base C (3/1); new base A (127/112); total (130/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 243 total aligned reads displayed.
TCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTT > CP009273/2404629‑2404917 | tCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCaaa > 1:3844529/1‑149 (MQ=255) ccccAATAATAAAAACGCCGGAAATCAGGACAACTTTTGGAACATAAAAGCCGTAAAATATTTGTGGGACTGTCCGGGTTCCGCTAAA‑TCAAAACGCTAAAATAAAAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAAc < 2:447404/147‑1 (MQ=255) ccaaaatattAAACATGCCGCAACTCAGGAAACCTTTGGTATAAAAAACGCCTTAAAATATTTCTGGGACTGACTGTGTACC‑CTTAATTGAAAACG‑GTAAATAAAAAAAAACCGCGACCGCATCCATACGCACTCTGCCCGTAGCAAAc < 2:3657824/145‑1 (MQ=255) gCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACa > 1:3785744/1‑149 (MQ=255) cAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAg > 2:3940132/1‑149 (MQ=255) cAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAg > 1:3021832/1‑149 (MQ=255) ataataAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGAc > 1:1115028/1‑149 (MQ=255) taataaACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACg > 1:3493556/1‑149 (MQ=255) taataaACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACg > 2:1804627/1‑149 (MQ=255) aataaACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGa > 2:145441/1‑149 (MQ=255) ataaACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGAt > 2:205699/1‑149 (MQ=255) taaACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATg > 2:1048384/1‑149 (MQ=255) cggcAATCAGCACAACTTTTGGATCATAAAAGCCGTAAAATACTTCTGGGAGTGTCTGCGTTCCGTTAAA‑TCAAAACGCGAAAATAAAAAACAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGcc < 2:790276/149‑1 (MQ=255) cggaAATCAGTACAACTTTTGGATCAGAAACGCCGTAAAATACTACTGGTACTGTCAGCGTTCCGATTAA‑TCAAAACGCGAAAATAAAAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGcc < 2:2043425/149‑1 (MQ=255) gcAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAg > 2:1422141/1‑149 (MQ=255) cAATCCGCAAAACTTTTGGAACACAAAAGCCGAAAAATACTTCTGGTACTGTCCGGGTTCCGCTTAA‑TCAAACCGCGAAAAAAACAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGt < 2:2517102/149‑1 (MQ=255) cAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATg > 1:3625675/1‑149 (MQ=255) aGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGa > 2:1387727/1‑149 (MQ=255) aGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGa > 2:2244388/1‑149 (MQ=255) aGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGa > 2:3335241/1‑149 (MQ=255) ggACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGaa > 1:2764704/1‑149 (MQ=255) cAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGa > 2:1536048/1‑149 (MQ=255) aaCTTTAGGATCAGAAAAGCATTAAAATACTTCTGGGACTTTCTGCGTTCCGCTTAA‑TCAAAACGCTAAAATAACAAAAAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGaa < 2:4026990/149‑1 (MQ=255) aatttAGTAGCAGAAAAGCGTTAAAATACTTCTGGGACTGTCTGCGTTCCGCTTAT‑TGCAAACGCTACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAc < 2:2663101/146‑1 (MQ=255) cGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAcc > 1:1547276/1‑149 (MQ=255) gTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAccc > 2:2884663/1‑149 (MQ=255) ggATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAAt > 1:37527/1‑149 (MQ=255) ataaaaGCCGTAAAATACTTGTGGGACTTTCAGCGTTCCGCTTAA‑TGAAAACGCCACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAAtt < 2:633409/147‑1 (MQ=255) aGAAAACCCGTAAAATACTACTGGGACTGTCAGCTTTCCGTTTAT‑TCAAAACGCTAAAATAAAAAAAAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAAtt < 2:3077390/149‑1 (MQ=255) aaGCCTAAAAATACTTGTGGGACTTGCAGCGTTCCTATTAA‑GTCAAACGCTACAATAAAAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCAcc < 2:2420973/149‑1 (MQ=255) aaGCCGTAAAATACTTCTGGGACTGACAGCTTTCCGCTTAA‑TGCAAACGCTAAAATAACAAAAAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCAcc < 2:2312388/149‑1 (MQ=255) aaGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGACCGTAGCAAACAAGACGATGGCAACGGCCAGTAAAGAAAGAACCCAAATCAATTCAcc > 1:1065552/1‑149 (MQ=255) ccGTAAAATACTTGTGGGACTGTCAGCTTTCCTATTAA‑TGAAACCGATAAAAAAAAAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTGATGAAAGAACCCAAATCAATTCACCGtt < 2:1895887/149‑1 (MQ=255) cttaaaaTAATTCTGGGAGTTTAAGCGTTCCGATTAA‑TTAAAACGCTAAAATAAAAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTc < 2:588291/146‑1 (MQ=255) aaTACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAAc > 2:4072511/1‑149 (MQ=255) aCTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTa > 2:858727/1‑149 (MQ=255) aCTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTa > 1:2793953/1‑149 (MQ=255) cTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTAt > 2:2231423/1‑149 (MQ=255) ttCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATc > 2:800235/1‑149 (MQ=255) tCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATcc > 2:1886348/1‑149 (MQ=255) tGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCtt > 2:3492422/1‑149 (MQ=255) gggACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTg > 1:3045737/1‑149 (MQ=255) ctttCAGCGTTCCGATAAA‑TCAAAACGCTAAAATAACAAAAAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTaa < 1:1648301/146‑1 (MQ=255) cAGCGTTCCGCTTAA‑TGCAAACGCTAAAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGa < 2:1004035/149‑1 (MQ=255) cAGCGTACCCCTTAA‑TCAAAACCAAAAAATAACAACCAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGa < 2:2762708/149‑1 (MQ=255) aaGCTTTCCGCTTAA‑TGCAACCGCCAAAATAACAAACAA‑CGCGACCGCATCCAGACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGa < 2:3854989/148‑1 (MQ=255) gCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAgg > 2:2571249/1‑149 (MQ=255) gCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTGGTTAATTGAgg > 2:2479971/1‑149 (MQ=255) ttCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAggggg > 1:2278858/1‑149 (MQ=255) ttCCGATTAA‑GCCAAACGCTACAATAACAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAggggg < 2:1316286/149‑1 (MQ=255) ccGCTAAA‑TGAAACCCCTAAAATAACAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGAt < 2:1849316/149‑1 (MQ=255) taaa‑TCCAAACCCCACAAAAACACACAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACt < 1:1875263/147‑1 (MQ=255) aa‑TGCAAACGCCAAAATAACAACCAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTg < 2:1901250/149‑1 (MQ=255) a‑TGCAAACGCTAAAAAAACAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGa < 2:3705165/149‑1 (MQ=255) cAAACGCTAAAATAACAAAAAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTc < 1:3000875/149‑1 (MQ=255) aaCGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTg > 2:303056/1‑149 (MQ=255) gcgACAATCACAAACAC‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCa < 2:2408278/149‑1 (MQ=255) ctaaaaTAACAAACAA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCAt < 2:3493556/145‑1 (MQ=255) aCAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATaa > 1:2471887/1‑149 (MQ=255) aaacacacaA‑CGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATaaaaaa < 2:3797057/148‑1 (MQ=255) aacaaacaA‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGTGGATGACTTGATTCTGCCATAAAAAAg > 1:3324085/1‑149 (MQ=255) acaaacaa‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGc < 2:3827019/149‑1 (MQ=255) acaaacaa‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGc > 2:2434421/1‑149 (MQ=255) acaaacaa‑AGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGc > 2:1600619/1‑149 (MQ=255) aaacaa‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGccc < 1:4058156/149‑1 (MQ=255) cacac‑aGCGACCGCATCCATACGCACTCTGCCCGTATCAAACAAGACGATGGCAACGGACAGTAATGAAAGAACCCAAATCAATTCACCGTTCAAAACTTATCCGTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGcccc < 1:3308328/148‑1 (MQ=255) aacaa‑aGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGcccc > 1:1737575/1‑149 (MQ=255) aacaa‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGcccc > 1:2033966/1‑149 (MQ=255) accaccgCGACCGCATCCAGACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGcccc < 1:2273656/143‑1 (MQ=255) acaa‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcg > 1:933414/1‑149 (MQ=255) acaa‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcg > 2:292026/1‑149 (MQ=255) caa‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcga < 2:1967897/149‑1 (MQ=255) aaacgCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcga < 2:2110539/145‑1 (MQ=255) aa‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgac < 2:3227102/149‑1 (MQ=255) cccgCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgac < 2:2315028/146‑1 (MQ=255) aacgCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgac < 2:532459/146‑1 (MQ=255) a‑aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgacg > 1:3886758/1‑149 (MQ=255) aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgacga > 2:2704272/1‑149 (MQ=255) aGCGACCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgacga < 2:3058497/149‑1 (MQ=255) aCCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACg > 1:1636561/1‑149 (MQ=255) aCCGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACACAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACg > 2:4094540/1‑149 (MQ=255) ccGCATCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACgg < 1:505763/149‑1 (MQ=255) aTCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCt < 2:1438337/149‑1 (MQ=255) tCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTa < 1:2647339/149‑1 (MQ=255) tCCATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATCCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTa > 2:1100001/1‑149 (MQ=255) cATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTaaa < 1:3280534/149‑1 (MQ=255) cATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTaaa > 2:1570085/1‑149 (MQ=255) cATACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTaaa > 1:1008440/1‑149 (MQ=255) aTACGCACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAAt < 1:3354900/149‑1 (MQ=255) cACTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGa < 2:1121731/149‑1 (MQ=255) aCTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGAt > 2:1656254/1‑149 (MQ=255) aCTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGAt < 2:327110/149‑1 (MQ=255) aCTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGAt > 1:3468951/1‑149 (MQ=255) aCTCTGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGAt < 1:785731/149‑1 (MQ=255) ctctGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATc < 2:4057926/149‑1 (MQ=255) ctctGCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATc > 2:1531402/1‑149 (MQ=255) tctGCCCGTAGAAAAAAAGACGATGGCAACGGCCATTAATGAAAGAACCCAAATCAATTCACCGTACACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCa < 1:1407639/149‑1 (MQ=255) gCCCGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGgt < 1:3184462/149‑1 (MQ=255) gCCCGTAGAAAACAACACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTTATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGgt < 1:3112074/149‑1 (MQ=255) cGTAGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGAATTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGtt < 2:893531/149‑1 (MQ=255) | TCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAA‑TGCAAACGCGACAATAACAAACAA‑AGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTT > CP009273/2404629‑2404917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |