| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,488,416 | G→T | 100% | P80P (CCG→CCT) | ypdI → | putative lipoprotein involved in colanic acid biosynthesis |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,488,416 | 0 | G | T | 96.2% | 700.5 / 17.0 | 238 | P80P (CCG→CCT) | ypdI | putative lipoprotein involved in colanic acid biosynthesis |
| Reads supporting (aligned to +/- strand): ref base G (5/4); new base T (113/116); total (118/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 238 total aligned reads displayed.
GAGAGGAGCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCGACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGCGAAT > CP009273/2488270‑2488561 | gagaGGAGCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTAc > 1:3150613/1‑149 (MQ=255) gaggagCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACaa < 2:2573494/149‑1 (MQ=255) ggagCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAg > 2:857735/1‑149 (MQ=255) ggagCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAg < 2:2783815/149‑1 (MQ=255) ggagCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAg > 2:1050270/1‑149 (MQ=255) ggagCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAg < 2:3335793/149‑1 (MQ=255) cTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGa < 1:1014827/149‑1 (MQ=255) tataAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGaa < 1:785568/149‑1 (MQ=255) tataAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGaa < 2:3907737/149‑1 (MQ=255) taAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAAtt < 1:3761490/149‑1 (MQ=255) taAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAAtt < 2:2628426/149‑1 (MQ=255) aaGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTAt > 1:2729162/1‑149 (MQ=255) agagACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATc < 1:4072200/149‑1 (MQ=255) agaCTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTTACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCtt < 2:4031674/149‑1 (MQ=255) aCTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTAt < 2:2440972/149‑1 (MQ=255) aCTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTAt < 2:3600188/149‑1 (MQ=255) cTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTAtt < 1:894748/149‑1 (MQ=255) tGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTc < 2:2969365/149‑1 (MQ=255) aaaaaaCATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCAt < 1:1309043/149‑1 (MQ=255) aaaaaaCATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCAt < 2:2566289/149‑1 (MQ=255) aaaaCATCAGCGATGCCGACCCCACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATcc < 1:2836633/149‑1 (MQ=255) aaaaCATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATcc < 1:446355/149‑1 (MQ=255) aaaCATCAGCGATGACGACCACACACTCTACAAAACTTCATACATCACAGGCGATTTTTTTTAAGAATAGACAAGATTGGCCACCAATAAAACACACAGAAAAAATGCCGCCCCCTATTCCTACAAAGGCGAAAAATCTTATTCAtaca > 1:2404218/1‑146 (MQ=255) aCATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCtgt < 2:3377554/149‑1 (MQ=255) aTCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAATATGTGAGAAGATGCGCCCCCATTTAACCTCACAGAAGAAAAGCCGCCCCCTTTTCCTACAAAGGCGCATTATATTATTCATCCTGTGc > 1:779910/1‑149 (MQ=255) gCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAAATATCGTATTCATCCTGTGCGATa > 1:3495851/1‑149 (MQ=255) gATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGc > 1:1674618/1‑149 (MQ=255) tGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGt < 2:3223894/149‑1 (MQ=255) gacgacCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCCCCCTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTc > 1:1479470/1‑149 (MQ=255) acgacCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCt < 1:3064312/149‑1 (MQ=255) acCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTc < 2:3767411/149‑1 (MQ=255) acacacTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTcaca < 1:3986985/149‑1 (MQ=255) acacacTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTcaca < 1:1897362/149‑1 (MQ=255) ctctACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCa < 1:2597885/149‑1 (MQ=255) ctctACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCa < 2:2264272/149‑1 (MQ=255) tctACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATTAGAGAAGATGCGCCCCCATTAAAACTCACAGAAGAAATGCCGCCCCCATTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATATCGTCTTTCACATGGCAg > 1:467533/1‑149 (MQ=255) ctACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAgg < 2:254265/149‑1 (MQ=255) aCTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCCCCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACaa > 2:3523756/1‑149 (MQ=255) aCTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACaa < 1:995956/149‑1 (MQ=255) cAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAACTGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCAt < 2:1856175/149‑1 (MQ=255) aGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATg < 1:2020163/149‑1 (MQ=255) gCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGt > 1:1029553/1‑149 (MQ=255) cacaGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTctgat < 2:663997/149‑1 (MQ=255) acaGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTctgatg > 2:1876089/1‑149 (MQ=255) caGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTctgatgc < 1:1826129/149‑1 (MQ=255) aGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTctgatgct < 1:2689147/149‑1 (MQ=255) gATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTctgatgctgatg > 1:388653/1‑149 (MQ=255) aTTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGAtgt > 1:566366/1‑149 (MQ=255) aTTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGAtgt > 1:566182/1‑149 (MQ=255) aTTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGAtgt < 2:1674618/149‑1 (MQ=255) ttGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGaa < 2:1456014/149‑1 (MQ=255) gTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAaca > 2:1206688/1‑149 (MQ=255) ttAAGATGAGAGAAGATGCGCCACCATTAAACCTCACATAAGAAATGCCGCCCCTTTTTCCTACACAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACTTGGCAGGTTAACAATCATGTCTGATGATGATGTGAACAcc < 2:2153643/149‑1 (MQ=255) tAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCt > 1:121064/1‑149 (MQ=255) aaGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTg > 2:537938/1‑149 (MQ=255) aGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGc > 1:302192/1‑149 (MQ=255) aGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGc < 1:408200/149‑1 (MQ=255) gATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGcc > 2:3793021/1‑149 (MQ=255) agagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCaaa < 1:3643932/149‑1 (MQ=255) gagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAAt < 2:877929/149‑1 (MQ=255) gagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAAt < 2:3784756/149‑1 (MQ=255) gagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGATGATGTGAACACCTGACCAAAt > 1:2515933/1‑149 (MQ=255) agaagaTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATg > 1:1817398/1‑149 (MQ=255) agaTGCTCCACCATTAAACATCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATTGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGc < 2:2082546/149‑1 (MQ=255) agaTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGc > 2:2918833/1‑149 (MQ=255) aTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCa > 2:1688687/1‑149 (MQ=255) gcCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCt > 1:949747/1‑149 (MQ=255) ccaccaTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTg > 2:1969651/1‑149 (MQ=255) ccaccaTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTg > 1:239687/1‑149 (MQ=255) accaTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGAc > 1:3429035/1‑149 (MQ=255) ccaTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGAcc > 1:3240670/1‑149 (MQ=255) ccaTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGAcc > 1:1455633/1‑149 (MQ=255) aTTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCa > 2:255073/1‑149 (MQ=255) ttAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCAc < 2:152932/149‑1 (MQ=255) ttAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCAc < 2:3828435/149‑1 (MQ=255) aaaCCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTa > 1:3286091/1‑149 (MQ=255) aaCCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCCAATGTGCCATCCTGACCCACTAc > 2:2822157/1‑149 (MQ=255) aaCCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTAc > 2:2697293/1‑149 (MQ=255) aaCCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTAc > 1:2343330/1‑149 (MQ=255) aCCTCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTAcc < 1:3963436/149‑1 (MQ=255) ccTCACAGAAGAAATGCCGCCCCCGTTTCCGACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGACCAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCg > 2:2829694/1‑149 (MQ=255) tCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGcc < 2:1479470/149‑1 (MQ=255) tCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGcc < 2:1107590/149‑1 (MQ=255) tCACAGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGcc < 1:423382/149‑1 (MQ=255) cacaGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCt > 1:3414838/1‑149 (MQ=255) acaGAAGAAATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTg > 2:3102985/1‑149 (MQ=255) caGAAGAACTGCCGCCCCCTTTTCCGACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGc < 2:3651119/149‑1 (MQ=255) gaagaaATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGAGAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCa < 2:1762494/149‑1 (MQ=255) aagaaATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCAt > 2:501160/1‑149 (MQ=255) agaaATGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATa > 1:3308326/1‑149 (MQ=255) aaTGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATAccc > 2:1221587/1‑149 (MQ=255) aTGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATAcccc < 2:1235517/149‑1 (MQ=255) aTGCCGCCCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACACACTACCGCCTGCCATAcccc > 2:2480973/1‑149 (MQ=255) gccCCCTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCAt > 1:705970/1‑149 (MQ=255) cccccTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTTAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATa > 1:2638755/1‑149 (MQ=255) cccccTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATa > 2:207883/1‑149 (MQ=255) accTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATaaa < 2:4065614/148‑1 (MQ=255) cTTTTCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGc < 2:3366557/149‑1 (MQ=255) ttttCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGCg > 1:2857622/1‑149 (MQ=255) tCCTACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGCGAat < 2:305083/149‑1 (MQ=255) | GAGAGGAGCTATAAAGAGACTGAAAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTCCGACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGCGAAT > CP009273/2488270‑2488561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |