| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,739,374 | G→T | 5.3% | I57I (ATC→ATA) | rpsP ← | 30S ribosomal subunit protein S16 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,739,374 | 0 | G | T | 5.3% | 862.9 / 15.5 | 232 | I57I (ATC→ATA) | rpsP | 30S ribosomal subunit protein S16 |
| Reads supporting (aligned to +/- strand): ref base G (121/98); new base T (8/5); total (129/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 249 total aligned reads displayed.
TTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGCCGTGAC > CP009273/2739226‑2739522 | ttCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAgcg < 2:2578490/149‑1 (MQ=255) ccAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAgcgatg < 1:3225936/149‑1 (MQ=255) aaaCGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAgcgatgcga < 2:3567581/149‑1 (MQ=255) aCGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatc < 2:2061950/149‑1 (MQ=255) gATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatcca > 2:2156794/1‑149 (MQ=255) tGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccaga > 1:2901544/1‑149 (MQ=255) gggATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccagat > 1:2390692/1‑149 (MQ=255) ggATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccagatc < 1:3012123/149‑1 (MQ=255) ggATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccagatc < 1:815929/149‑1 (MQ=255) gATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccagatcc < 1:1541216/149‑1 (MQ=255) aTCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccagatcca < 2:4012475/149‑1 (MQ=255) aTCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCgatccagatcca < 1:2152836/149‑1 (MQ=255) tCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGatccagatccag < 2:701509/149‑1 (MQ=255) tCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGatccagatccag < 2:2494515/149‑1 (MQ=255) gCTTGCGCTGTTTGTTGTTTGCTCATCATGACCACCGTGACAGTTTTAGCTGATTTGTTTACTTCTTTGATCAGCGAACCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGTTGCGATCCAGATCCAGGCGAGTGcc < 2:1358600/149‑1 (MQ=255) gCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGcc > 1:3385941/1‑149 (MQ=255) gcgcGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCcttct < 1:1133998/149‑1 (MQ=255) gcgGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCcttcttc > 1:3401737/1‑149 (MQ=255) gTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCttt > 2:3390161/1‑149 (MQ=255) gTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCttt < 2:1948272/149‑1 (MQ=255) gTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCttt < 2:1565543/149‑1 (MQ=255) tGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCtttt > 2:2913952/1‑149 (MQ=255) tGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCtttt > 2:3180461/1‑149 (MQ=255) tGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCtttt > 2:898350/1‑149 (MQ=255) aGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTc > 2:1992805/1‑149 (MQ=255) tgttTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCt < 1:3837359/149‑1 (MQ=255) tgttTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCt < 1:3071193/149‑1 (MQ=255) gttTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTa > 2:1530377/1‑149 (MQ=255) catGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGt > 2:3877702/1‑149 (MQ=255) cGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCTATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAAc > 1:1735319/1‑149 (MQ=255) cGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAAc < 2:539496/149‑1 (MQ=255) cGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAAc > 1:2633385/1‑149 (MQ=255) gACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCaa < 1:3806321/149‑1 (MQ=255) gATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAAcgcg > 2:3042949/1‑149 (MQ=255) aTTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACgcgc > 2:2680324/1‑149 (MQ=255) ttAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCt > 2:2479617/1‑149 (MQ=255) ttAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCt > 1:1028496/1‑149 (MQ=255) aaGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCg > 2:4098326/1‑149 (MQ=255) aGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGa > 2:410937/1‑149 (MQ=255) aGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGa < 1:2197104/149‑1 (MQ=255) gctgctTTGTTTACTTCTTTGATCAGCGCAGCACCGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGAt > 2:3461495/1‑149 (MQ=255) gctTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGGCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGaa > 2:491232/1‑149 (MQ=255) gctTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGaa > 2:2558327/1‑149 (MQ=255) ctTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAg > 1:2165389/1‑149 (MQ=255) tttGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGc > 1:3954859/1‑149 (MQ=255) tttGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGc > 2:2873074/1‑149 (MQ=255) tttGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGc < 2:2322398/149‑1 (MQ=255) tttGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGc > 2:1788367/1‑149 (MQ=255) ttGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCg < 2:2900150/149‑1 (MQ=255) tttttACTTCTTTGATCAGCGCAGCAACGAGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCTATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGa < 2:865036/147‑1 (MQ=255) tttACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGAcc < 1:3691140/149‑1 (MQ=255) tagttatttGATCAGCGCAGCAACGCTATAATAAATTGTTGCGCCCTGGCCAACCCAGTGAGCTATGCGATCCAGATCCTGGCGAGTGCCTTCTTCTTTTTCGCTAGCGTTTGGGTTTAAGAAACCAACGCGCTCGATGAAGCGACCGt < 1:752088/143‑1 (MQ=255) cttcttTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCTATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTg > 2:2912457/1‑149 (MQ=255) tcttTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCg > 1:25677/1‑149 (MQ=255) ttGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGc > 1:2448316/1‑149 (MQ=255) tGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGTAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCa > 1:1374622/1‑149 (MQ=255) tGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCa > 1:1417671/1‑149 (MQ=255) gATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCAt > 1:1704715/1‑149 (MQ=255) gATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTCCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCAt > 1:2072469/1‑149 (MQ=255) aTCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCAtt > 2:2362786/1‑149 (MQ=255) tCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTa > 1:2262187/1‑149 (MQ=255) cAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTAc < 2:1535433/149‑1 (MQ=255) aGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACg > 1:980235/1‑149 (MQ=255) aGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACg > 2:2200392/1‑149 (MQ=255) aGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACg > 2:123535/1‑149 (MQ=255) gcgcAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACgg > 1:880842/1‑149 (MQ=255) cgcAGCAACGCGATCATAAATAGTTGCGCCCTGGCCACCCCAGGGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGc < 1:1914149/149‑1 (MQ=255) gcaACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTc > 1:1018778/1‑149 (MQ=255) gcaACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTc > 2:1685300/1‑149 (MQ=255) gcaACGCGATCAGAAATAGTTGCGCCCGGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTc < 1:1910359/149‑1 (MQ=255) aaCGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAg > 2:3227504/1‑149 (MQ=255) aaCGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAg > 2:4090809/1‑149 (MQ=255) aaCGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAg < 2:1562292/149‑1 (MQ=255) aGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGAcaacaa > 1:3506274/1‑149 (MQ=255) gAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACaacaac > 2:2832125/1‑149 (MQ=255) aaaTAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAAcc < 2:1445358/149‑1 (MQ=255) aaaTAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAAcc < 2:3969966/149‑1 (MQ=255) aaTAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCt > 1:2804892/1‑149 (MQ=255) aTAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTg > 2:626102/1‑149 (MQ=255) aTAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTg > 2:1808999/1‑149 (MQ=255) aTAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTg > 1:1628664/1‑149 (MQ=255) aGTTGCGCCCTGGCCAACCCAGTGAGCTATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGt < 2:1734835/149‑1 (MQ=255) gTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTa < 2:2759393/149‑1 (MQ=255) gTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTa < 1:2283549/149‑1 (MQ=255) gcgcCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGaa > 1:574740/1‑149 (MQ=255) cgcCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAAc > 1:580406/1‑149 (MQ=255) cTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGAc < 2:2838837/149‑1 (MQ=255) tGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACg > 1:2969270/1‑149 (MQ=255) ggCCAACCCCGTGCGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGc < 1:122552/149‑1 (MQ=255) ggCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGc < 2:1418651/149‑1 (MQ=255) ccAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGTTTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCtt < 1:2129910/149‑1 (MQ=255) cccAGTGCGCGATGCGATCCAGAGCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTa < 1:2499256/149‑1 (MQ=255) cccAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTa < 1:487551/149‑1 (MQ=255) aGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAgcg > 1:4044704/1‑149 (MQ=255) tGAGCGATTCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGcc < 2:1853462/149‑1 (MQ=255) cgatgcgatCCACATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGCCGTGa < 1:788135/149‑1 (MQ=255) gatgcgatCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGCCGTGAc > 2:3682616/1‑149 (MQ=255) gatgcgatCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGCCGTGAc < 1:1788367/149‑1 (MQ=255) gatgcgatCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGCCGTGAc < 1:1957004/149‑1 (MQ=255) gatgcgatCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTGTTTAGCGCCGTGAc > 2:3683139/1‑149 (MQ=255) | TTCCCAAAACGATGGGATCAACAGGTGCTTGCGCGGTGAGTTGTTTGCTCATCATGACCACCGTGACAGATTAAGCTGCTTTGTTTACTTCTTTGATCAGCGCAGCAACGCGATCAGAAATAGTTGCGCCCTGGCCAACCCAGTGAGCGATGCGATCCAGATCCAGGCGAGTGCCTTCTTCTTTTTCGCTAGCGATTGGGTTGAAGAAACCAACGCGCTCGATGAAGCGACCGTTGCGTGCATTACGGCTGTCAGCGACAACAACCTGGTAGAACGGACGCTTTTTAGCGCCGTGAC > CP009273/2739226‑2739522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |