| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,873,087 | G→T | 100% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,873,087 | 0 | G | T | 99.2% | 771.1 / ‑1.7 | 237 | V15V (GTC→GTA) | ygbT | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base T (118/117); total (118/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 237 total aligned reads displayed.
GCTGCATGCGAAACCCGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGAGACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTATTAACGCTGGCG > CP009273/2872941‑2873232 | cTGCATGCGAAACCCGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATAcg > 1:1710495/1‑149 (MQ=255) tGCATGCGAAACCCGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATAcgc < 1:2163828/149‑1 (MQ=255) tGCATGCGAAACCCGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATAcgc < 2:1389271/149‑1 (MQ=255) tGCGAAACCCGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATc < 1:1914644/149‑1 (MQ=255) cccGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGt < 1:2717743/149‑1 (MQ=255) gtgtACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGa < 1:2105856/149‑1 (MQ=255) gtgtACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGa < 1:3200155/149‑1 (MQ=255) gtgtACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGa > 1:1173645/1‑149 (MQ=255) ggTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGAtt > 2:3695993/1‑149 (MQ=255) gTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTa > 2:2058645/1‑149 (MQ=255) tCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAg < 1:3767715/149‑1 (MQ=255) tCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAg > 1:3635881/1‑149 (MQ=255) tCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAg < 1:3309890/149‑1 (MQ=255) gCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGa < 1:2144131/149‑1 (MQ=255) gCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGa < 1:3347267/149‑1 (MQ=255) atgatgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAg > 1:3527141/1‑149 (MQ=255) atgatgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAg < 1:2934258/149‑1 (MQ=255) gatgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGCAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGcc < 2:532835/149‑1 (MQ=255) gatgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGcc < 1:496294/149‑1 (MQ=255) tgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAg < 2:1173645/149‑1 (MQ=255) tgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAg > 1:3781310/1‑149 (MQ=255) tgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAg > 2:3613244/1‑149 (MQ=255) tgCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAg > 1:1511318/1‑149 (MQ=255) aGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTc > 1:2459134/1‑149 (MQ=255) ggCAACCTAGCCAACATGAATATGAGTGCTGATCACTGTCTTGTCGATTAGTACTAACGCGCCATCTTTTTCATCGTTATGCACATATTGCAGAATGATCTTGTATACGCGTTCTTTGAGTGGAATGGGATTAAGGGGAAGGCAGGTCa < 1:2833727/149‑1 (MQ=255) aaCCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCAttt < 2:1559190/149‑1 (MQ=255) aaCCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCAttt < 2:3023586/149‑1 (MQ=255) aaCCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCAttt > 1:3456097/1‑149 (MQ=255) aCCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCAtttt < 2:1440920/149‑1 (MQ=255) ccGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTtta > 1:2352191/1‑149 (MQ=255) aGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTttatta > 2:305833/1‑149 (MQ=255) aGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTttatta > 1:1136065/1‑149 (MQ=255) aaCAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACAcc < 2:2324841/149‑1 (MQ=255) aCAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACTCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCt > 1:3004462/1‑149 (MQ=255) ggAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCaa < 2:2357527/149‑1 (MQ=255) ggAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCaa > 2:2969533/1‑149 (MQ=255) gAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAAt < 2:2740217/149‑1 (MQ=255) gAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGAGACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAAt < 1:2677534/149‑1 (MQ=255) aaTATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATc < 2:728105/149‑1 (MQ=255) tatGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATcac < 2:3649064/149‑1 (MQ=255) tatGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATGGTATTACACCTCAATcac > 2:2644201/1‑149 (MQ=255) tGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAg > 2:115678/1‑149 (MQ=255) tGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGa < 2:1822510/149‑1 (MQ=255) gATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCa > 1:2001259/1‑149 (MQ=255) tCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCaaa > 1:820574/1‑149 (MQ=255) tCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCaaa > 1:1533702/1‑149 (MQ=255) cccTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAg > 2:3248564/1‑149 (MQ=255) cccTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAg > 2:3084690/1‑149 (MQ=255) cccTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAg > 1:2113504/1‑149 (MQ=255) ccTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGa < 2:1033578/149‑1 (MQ=255) tGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATa > 1:3647586/1‑149 (MQ=255) tGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATa < 1:2860630/149‑1 (MQ=255) tGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATa > 1:901746/1‑149 (MQ=255) gTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAg < 2:1357081/149‑1 (MQ=255) gTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAg < 1:304814/149‑1 (MQ=255) tCTGGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTAGTACACCTCAATCACAGTGGAGCCAAAGATAGc < 2:644090/149‑1 (MQ=255) gTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGc > 1:417866/1‑149 (MQ=255) tCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGcc > 1:690738/1‑149 (MQ=255) gATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCcac > 1:226972/1‑149 (MQ=255) gtAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCcaca > 1:1787198/2‑149 (MQ=255) aTAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCcaca > 1:2614430/1‑149 (MQ=255) aaGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATc > 2:3828587/1‑149 (MQ=255) aGTACAAACGCGCCATCTTTTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGTGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCAACATcc < 2:4005342/149‑1 (MQ=255) aGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATcc < 1:2496539/149‑1 (MQ=255) aCAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCAt < 2:3662676/149‑1 (MQ=255) cAAAAGCGCCATCTATTACATCGATCTGCCGATATTGCAGAAAGATCATTGATACGCTATATTTTAGTGGAATGGGATTAATGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATc < 2:2589694/149‑1 (MQ=255) cgcgCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGAtt < 1:1870896/149‑1 (MQ=255) cATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCt > 2:2228155/1‑149 (MQ=255) tACATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCaa > 1:1274222/1‑149 (MQ=255) aCATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAAt > 2:3874940/1‑149 (MQ=255) aCATCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAAt > 2:3536872/1‑149 (MQ=255) aTCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATAc > 2:1237838/1‑149 (MQ=255) tCGATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATAcc > 2:3135796/1‑149 (MQ=255) gATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCtt > 1:3923756/1‑149 (MQ=255) gATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCtt > 2:685358/1‑149 (MQ=255) gATCTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCtt > 2:1920034/1‑149 (MQ=255) cTGCCCATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCt < 2:2843418/149‑1 (MQ=255) ccATATTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTAc > 2:60594/1‑149 (MQ=255) atatTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACaa > 2:785272/1‑149 (MQ=255) atatTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACaa > 2:2847154/1‑149 (MQ=255) atatTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACaa < 1:3446037/149‑1 (MQ=255) tatTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAg > 1:1580514/1‑149 (MQ=255) tatTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAg < 2:430696/149‑1 (MQ=255) atTGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGa < 1:3179902/149‑1 (MQ=255) ttGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCACTCCCCGTGGAGCCTAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGAt < 1:2954080/149‑1 (MQ=255) ttGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCCAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGAt > 2:1143929/1‑149 (MQ=255) ttGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGAt < 1:485613/149‑1 (MQ=255) ttGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGAt > 2:3722963/1‑149 (MQ=255) tGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATc > 2:2870247/1‑149 (MQ=255) tGCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATc > 2:3519618/1‑149 (MQ=255) gCAGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCt > 2:3203501/1‑149 (MQ=255) cAGAAAGATCATGGATACGCGATCGTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCGTGCTGTCCAAGAGCTa > 2:1267989/1‑149 (MQ=255) aGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTAt > 2:3765345/1‑149 (MQ=255) aGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTAt < 1:3811687/149‑1 (MQ=255) aGAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTAt < 2:1856975/149‑1 (MQ=255) gAAAGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTAtt > 1:3085251/1‑149 (MQ=255) aaGATCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTATTaa < 1:3965782/149‑1 (MQ=255) aTCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTATTAACGc < 2:1230640/149‑1 (MQ=255) aTCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTATTAACGc < 2:3281700/149‑1 (MQ=255) tCATGGATACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTATTAACGCt > 2:1797412/1‑149 (MQ=255) | GCTGCATGCGAAACCCGTGTACCAGGTTCCAGCATGATGCAGGCAACCGAGCCAACAGGAATATGAGTGCGGATCCCTGTCTTGTCGATAAGTACAAACGCGCCATCTATTACATCGATCTGCCCATATTGCAGAAAGATCATGGAGACGCGATCTTTGAGTGGAATGGGATTAAGGGGAAGCCAGGTCATTTTATTACACCTCAATCACAGTGGAGCCAAAGATAGCAAGCCACATCCCATCGATTTAGCTGGCCCAATACCTTGCTGTACAAGATCTATTAACGCTGGCG > CP009273/2872941‑2873232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |