| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,875,198 | C→A | 8.3% | E102* (GAA→TAA) | casC ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,875,198 | 0 | C | A | 8.3% | 934.0 / 37.1 | 263 | E102* (GAA→TAA) | casC | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| Reads supporting (aligned to +/- strand): ref base C (107/134); new base A (15/7); total (122/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 275 total aligned reads displayed.
CGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGTAATAA > CP009273/2875050‑2875346 | tATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTtcat > 1:975695/1‑149 (MQ=255) gcggcAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAAc < 2:788653/149‑1 (MQ=255) gcAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGa < 2:80142/149‑1 (MQ=255) cAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGAt < 1:168713/149‑1 (MQ=255) cAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGAt < 1:1711120/149‑1 (MQ=255) atatCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGAttt < 1:1977219/149‑1 (MQ=255) tatCTTCCTTAAGAACTTTGAGCGGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTa > 1:2520367/1‑149 (MQ=255) atCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTAc < 1:2582478/149‑1 (MQ=255) atCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTAc < 1:2163286/149‑1 (MQ=255) atCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTAc > 1:2889756/1‑149 (MQ=255) cTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTAccn < 1:2820488/149‑2 (MQ=255) cTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCg > 1:224212/1‑149 (MQ=255) cTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCg > 2:1246654/1‑149 (MQ=255) tCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGga > 1:3915265/1‑149 (MQ=255) gAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGagcagc > 2:3571617/1‑149 (MQ=255) aCTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAgcgc < 1:1405204/149‑1 (MQ=255) cTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCt > 2:3488709/1‑149 (MQ=255) tttGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTa > 2:588599/1‑149 (MQ=255) ttGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTaa < 2:839909/149‑1 (MQ=255) tGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAAt > 1:508009/1‑149 (MQ=255) cagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCt < 1:1599135/149‑1 (MQ=255) cTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTAt < 1:3222645/149‑1 (MQ=255) tttttATCATCCATATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATc < 1:3402485/149‑1 (MQ=255) tttttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATc < 1:1353530/149‑1 (MQ=255) tttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCga > 1:3697883/1‑149 (MQ=255) ttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCgat < 2:687577/149‑1 (MQ=255) catcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGAtt > 1:2470405/1‑149 (MQ=255) atcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGAttt > 1:1320626/1‑149 (MQ=255) tcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCgatga > 1:1752625/1‑145 (MQ=255) tcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGAtttt < 2:3940432/149‑1 (MQ=255) ccAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGAttttt < 2:1549016/149‑1 (MQ=255) aGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTg > 2:560936/1‑149 (MQ=255) gATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTgg > 2:27178/1‑149 (MQ=255) aTTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGt < 2:2795208/149‑1 (MQ=255) ttATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTc > 1:1105456/1‑149 (MQ=255) tATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCa < 1:1457005/149‑1 (MQ=255) cAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATTATTTTTTGGTCaaaa < 2:3661158/149‑1 (MQ=255) gCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTAAAAACg < 1:2977429/149‑1 (MQ=255) ccTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGt < 1:2633666/149‑1 (MQ=255) gCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCAcc > 1:2610991/1‑149 (MQ=255) cTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCa > 2:3960443/1‑149 (MQ=255) ttttGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCaa < 2:3448946/149‑1 (MQ=255) ccTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGc < 1:1926596/149‑1 (MQ=255) gCTCACAGAACCAGTCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATATTTTCTGCTTCATCAACTGATTTACCCGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGTTCAAAACCTTCACCAAGTTTTTGACga > 1:3609761/1‑149 (MQ=255) cTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCgaa < 2:2470220/149‑1 (MQ=255) cTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCgaa < 1:2092064/149‑1 (MQ=255) tCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCgaag > 1:1933742/1‑149 (MQ=255) acaGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCgaagaa > 2:1895320/1‑149 (MQ=255) aGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACa > 1:1104487/1‑149 (MQ=255) gAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACAt > 1:1812914/1‑149 (MQ=255) gAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACAt > 2:1217035/1‑149 (MQ=255) aGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGt > 1:3501661/1‑149 (MQ=255) ggCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTa > 2:314668/1‑149 (MQ=255) gCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTaa > 1:358184/1‑149 (MQ=255) gCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTaa > 1:4097955/1‑149 (MQ=255) cTATTTCTCCCTCAACCCATGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAAt < 2:1677305/149‑1 (MQ=255) cTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAAt < 2:3392485/149‑1 (MQ=255) cTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAAt < 2:3721153/149‑1 (MQ=255) cTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAAt < 1:659516/149‑1 (MQ=255) tATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAAtt < 2:2623233/149‑1 (MQ=255) cccACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAg < 2:2998161/149‑1 (MQ=255) ccACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGa < 2:1858685/149‑1 (MQ=255) caACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGa > 1:1545535/1‑149 (MQ=255) aaCCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGaa > 1:840386/1‑149 (MQ=255) aaCCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGaa < 2:2231103/149‑1 (MQ=255) ccccAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAAt < 2:73037/148‑1 (MQ=255) ccAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATgg > 1:690106/1‑149 (MQ=255) cAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGt < 2:2564403/149‑1 (MQ=255) cAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGt < 1:3305675/149‑1 (MQ=255) gggAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTc < 2:3720571/149‑1 (MQ=255) gggAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTc > 2:3420402/1‑149 (MQ=255) aGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTga < 1:604476/149‑1 (MQ=255) tAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTgaga > 1:3427663/1‑149 (MQ=255) aaCCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGAc < 2:3993610/149‑1 (MQ=255) aCCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACt < 2:234907/149‑1 (MQ=255) ccGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTg < 1:536641/149‑1 (MQ=255) ccGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTg < 1:2959832/149‑1 (MQ=255) cGCATCGGCAGAAATCTTTTCGGCTTCATCCACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTgg < 2:2434802/149‑1 (MQ=255) cATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGAt < 2:1480869/149‑1 (MQ=255) tCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTc < 2:2269750/149‑1 (MQ=255) gCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCAcc > 2:977084/1‑149 (MQ=255) aGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCaa < 2:3931386/149‑1 (MQ=255) gAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAat > 1:2435750/1‑149 (MQ=255) aaaTCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAata < 1:2317708/149‑1 (MQ=255) aaaTCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAata < 2:2294264/149‑1 (MQ=255) aTCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAtt < 2:1639323/149‑1 (MQ=255) tCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAttt > 2:1742318/1‑149 (MQ=255) tCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAttt < 2:2912339/149‑1 (MQ=255) tCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAttt < 2:2318664/149‑1 (MQ=255) ttttCGGCTTCATCAACTGATTTACCGGCGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTtg > 2:2097045/1‑149 (MQ=255) ttttCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTtg > 2:20760/1‑149 (MQ=255) ttttCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTtg > 1:1997710/1‑149 (MQ=255) tttCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTtgt < 2:2887185/149‑1 (MQ=255) tCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGc < 1:2825397/149‑1 (MQ=255) gCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGta > 1:1824338/1‑149 (MQ=255) gCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGta > 1:1820736/1‑149 (MQ=255) cTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGtaa > 2:3800235/1‑149 (MQ=255) ttCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGtaat < 1:299575/149‑1 (MQ=255) tcatcaACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGtaata < 1:3953002/149‑1 (MQ=255) catcaACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGtaataa > 1:556052/1‑149 (MQ=255) | CGTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGTAATAA > CP009273/2875050‑2875346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |