| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,878,098 | T→A | 6.9% | A827A (GCA→GCT) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,878,098 | 0 | T | A | 6.9% | 812.8 / 37.9 | 260 | A827A (GCA→GCT) | ygcB | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Reads supporting (aligned to +/- strand): ref base T (116/126); new base A (11/7); total (127/133) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 260 total aligned reads displayed.
ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTA > CP009273/2877951‑2878245 | tCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGc > 2:3814480/1‑149 (MQ=255) cccTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCaa < 2:2304005/149‑1 (MQ=255) gTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAgcgc > 2:1344372/1‑149 (MQ=255) ggTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCAt < 2:3982527/149‑1 (MQ=255) ggTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGAGTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCAt < 2:694048/149‑1 (MQ=255) taataaCAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATAc > 1:249082/1‑149 (MQ=255) aataaCAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATAct > 2:424306/1‑149 (MQ=255) ataaCAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATActg < 2:1273824/149‑1 (MQ=255) taaCAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATActgc < 2:2941416/149‑1 (MQ=255) aaCAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCATAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATActgct < 2:3604131/149‑1 (MQ=255) aTACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTc > 1:2763945/1‑149 (MQ=255) aTACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTc > 2:1843386/1‑149 (MQ=255) aTACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTc > 2:4109196/1‑149 (MQ=255) tACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCa < 2:246069/149‑1 (MQ=255) tACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTAAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCa < 1:489839/149‑1 (MQ=255) cTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATg > 1:2265154/1‑149 (MQ=255) tGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAGGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGa > 1:2823947/1‑149 (MQ=255) tGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGa > 1:1840540/1‑149 (MQ=255) gTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGAc > 1:1607161/1‑149 (MQ=255) gTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGAc < 2:3327219/149‑1 (MQ=255) aCCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTa < 2:641173/149‑1 (MQ=255) ccTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAgg < 1:2026495/149‑1 (MQ=255) ccAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCt < 2:1331589/149‑1 (MQ=255) ccAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCt < 2:1671873/149‑1 (MQ=255) gACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGt > 1:197072/1‑149 (MQ=255) atccatccAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGAcc < 1:2175372/149‑1 (MQ=255) tccatccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCt > 2:228956/1‑149 (MQ=255) ccatccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTg < 2:450274/149‑1 (MQ=255) atccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGc > 2:1763120/1‑149 (MQ=255) tccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGcc < 2:569593/149‑1 (MQ=255) tccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGcc > 1:3776650/1‑149 (MQ=255) tccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGcc > 1:1733912/1‑149 (MQ=255) tccaGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCAACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTAAATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGcc > 1:3796002/1‑149 (MQ=255) aGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATc < 1:1987186/149‑1 (MQ=255) aGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATc > 2:2193508/1‑149 (MQ=255) gATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCg > 2:2204908/1‑149 (MQ=255) gATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCg > 1:4071791/1‑149 (MQ=255) ttCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAg > 1:553952/1‑149 (MQ=255) tGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAg > 1:3294673/1‑149 (MQ=255) tGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAg > 1:1241097/1‑149 (MQ=255) tttCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgtt < 2:4095817/149‑1 (MQ=255) tttCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgtt > 1:2096687/1‑149 (MQ=255) tttCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTGTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgtt < 2:769542/149‑1 (MQ=255) tCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgttgt > 2:2887924/1‑149 (MQ=255) cccTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgttgtt < 2:3197628/149‑1 (MQ=255) cccTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAgttgtt > 1:1967192/1‑149 (MQ=255) ccTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGttt < 2:1258679/149‑1 (MQ=255) tCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATAAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTAcc < 1:1776546/149‑1 (MQ=255) aGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGa > 1:3015112/1‑149 (MQ=255) cAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGa < 1:3648541/149‑1 (MQ=255) cAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGa < 1:2666212/149‑1 (MQ=255) gTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGtt < 1:4027765/149‑1 (MQ=255) tAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGttt < 1:3989432/149‑1 (MQ=255) aaCCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTg < 2:2994563/149‑1 (MQ=255) aCCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGt < 1:2618954/149‑1 (MQ=255) cccATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTa < 1:1130955/149‑1 (MQ=255) tCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATa > 1:832261/1‑149 (MQ=255) tCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATa > 1:2550257/1‑149 (MQ=255) cTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATaa < 2:1012829/149‑1 (MQ=255) ttCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAg < 2:2823850/149‑1 (MQ=255) ttCATCTACTACTTCAGAAAAACTACGTGTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAg < 1:3548841/149‑1 (MQ=255) cATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGc < 1:2474030/149‑1 (MQ=255) aTCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCa > 2:1722770/1‑149 (MQ=255) tCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaa < 1:99621/149‑1 (MQ=255) tCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaa < 1:3405826/149‑1 (MQ=255) ctactaCTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaat < 1:4109196/149‑1 (MQ=255) actactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataa > 1:2137986/1‑149 (MQ=255) ctactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataat < 2:1534986/149‑1 (MQ=255) ctactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataat < 1:2286768/149‑1 (MQ=255) ctactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataat < 1:1258303/149‑1 (MQ=255) ctactTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCaataat < 1:3221700/149‑1 (MQ=255) actTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATgg > 1:2339855/1‑149 (MQ=255) ctTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGc > 1:2724756/1‑149 (MQ=255) ttCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCa < 2:3941872/149‑1 (MQ=255) tCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAg < 1:3465848/149‑1 (MQ=255) gAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCt < 1:418098/149‑1 (MQ=255) aaaaaCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTc < 1:1359696/149‑1 (MQ=255) aaaaaCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTc < 2:1579739/149‑1 (MQ=255) aaaaCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCa > 2:551713/1‑149 (MQ=255) aaaaCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCCCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCa < 2:1506689/149‑1 (MQ=255) aaaCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGAGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCAt > 2:242456/1‑149 (MQ=255) aCTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCAttt > 1:1999796/1‑149 (MQ=255) aCGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTccc > 2:3271303/1‑149 (MQ=255) gTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCa < 1:3179069/149‑1 (MQ=255) ttCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATc < 2:1990379/149‑1 (MQ=255) cAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCt < 1:1079459/149‑1 (MQ=255) aGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTc > 1:2225402/1‑149 (MQ=255) aaGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTAc < 2:1150864/149‑1 (MQ=255) aGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTAcc > 2:316987/1‑149 (MQ=255) aGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTAcc > 2:1903418/1‑149 (MQ=255) gggTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCg > 2:2480399/1‑149 (MQ=255) tACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCaa > 1:3721168/1‑149 (MQ=255) ttGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAAt > 2:1419690/1‑149 (MQ=255) tGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATg < 1:1569424/149‑1 (MQ=255) gcgATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGttt < 2:1614427/149‑1 (MQ=255) gcgATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGttt > 2:826945/1‑149 (MQ=255) cgATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATTATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTc < 1:31384/149‑1 (MQ=255) aaGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGt < 1:951451/149‑1 (MQ=255) gTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTa < 1:624390/149‑1 (MQ=255) gTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTa > 2:888452/1‑149 (MQ=255) | ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACATTGACGCGATTAAGTGCAAGCGCCTCATACTGCTGTTCATGACTTAGGTCCTCGTAGACCTGGCCATCGAGCAGTTGTTTACCTGAAGACGTTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTA > CP009273/2877951‑2878245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |