| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,106,685 | G→T | 100% | S51Y (TCT→TAT) | yghG ← | secretin (GspDbeta) OM localization lipoprotein pilotin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,106,685 | 0 | G | T | 97.8% | 882.4 / 7.7 | 277 | S51Y (TCT→TAT) | yghG | secretin (GspDbeta) OM localization lipoprotein pilotin |
| Reads supporting (aligned to +/- strand): ref base G (6/0); new base T (125/146); total (131/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.05e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 279 total aligned reads displayed.
TCACCGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCAGATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTA > CP009273/3106539‑3106829 | tCACCGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCatat < 2:1478053/149‑1 (MQ=255) ccGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTa > 2:2740233/1‑149 (MQ=255) ccGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTa < 1:2707572/149‑1 (MQ=255) ccGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTa < 2:1820154/149‑1 (MQ=255) ccGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTa < 1:66846/149‑1 (MQ=255) cGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTaa < 1:3770342/149‑1 (MQ=255) gTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAAt < 1:569315/149‑1 (MQ=255) gTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAAt > 2:3523567/1‑149 (MQ=255) gTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGGACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAAt < 1:569282/149‑1 (MQ=255) gggTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCgg < 2:749467/149‑1 (MQ=255) ggTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGc > 1:2673415/1‑149 (MQ=255) gTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCa < 2:3435358/149‑1 (MQ=255) tCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAg > 2:1252888/1‑149 (MQ=255) cAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAgg > 1:527760/1‑149 (MQ=255) gcgcACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGtt > 1:995953/1‑149 (MQ=255) cacaTTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTg < 1:1244484/149‑1 (MQ=255) aTTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCt > 2:1650949/1‑149 (MQ=255) aTTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCt < 2:619650/149‑1 (MQ=255) aTTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCt < 2:2832993/149‑1 (MQ=255) ttGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGa < 2:1415637/149‑1 (MQ=255) ttGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGa < 2:1119316/149‑1 (MQ=255) ttGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATAtttt > 1:1004259/1‑149 (MQ=255) tGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTg > 1:3406436/1‑149 (MQ=255) aGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGcc < 1:1358761/149‑1 (MQ=255) aGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGcc > 2:2149293/1‑149 (MQ=255) gCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCt > 2:2341255/1‑149 (MQ=255) tGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGt > 1:1138948/1‑149 (MQ=255) tGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGt > 2:1186083/1‑149 (MQ=255) ggTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGtt > 2:245652/1‑149 (MQ=255) ggTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGtt > 1:3243364/1‑149 (MQ=255) gTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGttt < 2:3780632/149‑1 (MQ=255) tAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGttttt < 2:3383461/149‑1 (MQ=255) aaaaaGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGtttttt < 2:435306/149‑1 (MQ=255) aaaGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCg > 2:2214337/1‑149 (MQ=255) ggcgtcaggcgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCa < 2:1433708/149‑1 (MQ=255) tcaggcgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTaa > 1:2430147/1‑149 (MQ=255) aggcgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTTCGCCAGCACTAAGGTATATACCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAAc > 2:227671/1‑149 (MQ=255) aggcgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAAc < 2:546944/149‑1 (MQ=255) aggcgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAAc < 1:1291008/149‑1 (MQ=255) gcgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTg < 2:490084/149‑1 (MQ=255) cgtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTgg < 1:870982/149‑1 (MQ=255) gtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGc < 1:294592/149‑1 (MQ=255) gtcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGc > 2:3645075/1‑149 (MQ=255) tcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCa < 2:1498671/149‑1 (MQ=255) tcTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCa > 1:2243161/1‑149 (MQ=255) cTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCAt > 1:1828494/1‑149 (MQ=255) tGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCAtt > 2:3906791/1‑149 (MQ=255) tGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCAtt > 2:1578919/1‑149 (MQ=255) gCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCAttt > 2:864661/1‑149 (MQ=255) gCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCAttt < 1:327214/149‑1 (MQ=255) cGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCAtttt < 1:2270462/149‑1 (MQ=255) tttGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTa < 2:2011114/149‑1 (MQ=255) tttGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTa > 1:3209230/1‑149 (MQ=255) aCCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTAtggctgg > 1:3049299/1‑149 (MQ=255) aCCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTAtggctgg > 2:1696022/1‑149 (MQ=255) aCCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTAtggctgg > 1:3599889/1‑149 (MQ=255) gCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGcaca > 2:3677752/1‑149 (MQ=255) cTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAg < 2:3823585/149‑1 (MQ=255) cGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCa > 2:3306851/1‑149 (MQ=255) cTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTACGGAATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTGGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACt < 2:637162/149‑1 (MQ=255) aTAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTtaa > 2:3268656/1‑149 (MQ=255) tAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTtaat > 1:1229164/1‑149 (MQ=255) tAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGACATTTTCATTATGGCTGGCACAGCCACTtaat > 1:146434/1‑149 (MQ=255) aTGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTtaataa > 2:368692/1‑149 (MQ=255) aTGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTtaataa < 1:1577967/149‑1 (MQ=255) tGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTaataat > 1:424718/1‑149 (MQ=255) ggTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCAGATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATc > 1:2659373/1‑149 (MQ=255) gTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATcc > 1:933591/1‑149 (MQ=255) gTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATcc < 1:4095427/149‑1 (MQ=255) tCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCt < 1:3995289/149‑1 (MQ=255) tCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCt < 2:2847203/149‑1 (MQ=255) tttttACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTa < 1:3237172/149‑1 (MQ=255) ttttACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTaa < 1:1941041/149‑1 (MQ=255) ttttACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTaa < 2:695963/149‑1 (MQ=255) ttttACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTaa < 2:1302771/149‑1 (MQ=255) ttttACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTaa < 2:1302737/149‑1 (MQ=255) cGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTca > 1:803144/1‑149 (MQ=255) gTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTcaa > 1:1153651/1‑149 (MQ=255) ccGCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAg < 1:1040890/149‑1 (MQ=255) gCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCg > 2:1143263/1‑149 (MQ=255) gCTACTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCg < 2:241646/149‑1 (MQ=255) gCTACTTTGCGCCAGCACTAAGGTATATCCCACATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCg > 2:1770889/1‑149 (MQ=255) aCTTTGCGCCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGata < 1:3167623/149‑1 (MQ=255) cTTTGCGCCAGCACTAAGGTATATCCCGCAGATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGatat > 2:409821/1‑149 (MQ=255) cTTTGCGCCAGCACTAAGGTATATCCCGCAGATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGatat > 2:409732/1‑149 (MQ=255) cgcCAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATa < 1:3884216/149‑1 (MQ=255) ccAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATAcc > 1:238632/1‑149 (MQ=255) ccAGCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATAcc < 2:1957634/149‑1 (MQ=255) cAGCACTAAGGTATATCCCTCATATTTAATCGGCAGGTTTTTGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCAACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATAccc < 2:191188/149‑1 (MQ=255) gCACTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATAccctc > 1:2239009/1‑149 (MQ=255) aCTAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATAccctccc > 1:961464/1‑149 (MQ=255) tAAGGTATATCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTg > 1:2022113/1‑149 (MQ=255) tataTCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCAtt < 2:2673415/149‑1 (MQ=255) tataTCCCGCAGATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCAtt > 1:3012934/1‑149 (MQ=255) atatCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCAttt < 1:1439194/149‑1 (MQ=255) atCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGt < 1:2186573/149‑1 (MQ=255) tCCCGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGtt < 2:3142324/149‑1 (MQ=255) cccGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGttt > 1:2160937/1‑149 (MQ=255) cccGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAAAAATATCGATATTAATACCCTCCCTGGCATTTGttt < 1:3425906/149‑1 (MQ=255) ccGCATATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGtttt < 1:2786334/149‑1 (MQ=255) | TCACCGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAGGTATATCCCGCAGATTTAATCGGCAGGTTTTGGCTGATATTTTGCGCCTGTTTTTTCGCCAGTAAACTGGCATTTTCATTATGGCTGGCACAGCCACTTAATAATCCTGTAACGCTCAACAATAGCGATATTAATACCCTCCCTGGCATTTGTTTTA > CP009273/3106539‑3106829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |