Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 295,695 | T→G | 18.1% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 295,695 | 0 | T | G | 18.1% | 367.9 / 47.6 | 211 | E317D (GAA→GAC) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
Reads supporting (aligned to +/- strand): ref base T (49/120); new base G (39/3); total (88/123) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.25e-14 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 224 total aligned reads displayed.
CGTCGATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATCA > CP009273/295547‑295843 | cgtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGt‑t < 2:1933325/149‑1 (MQ=255) gtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGt‑tt < 1:1646801/149‑1 (MQ=255) gtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGt‑tt > 2:621277/1‑149 (MQ=255) cgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTcc > 2:2795494/1‑149 (MQ=255) aTCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCgg > 1:3401653/1‑149 (MQ=255) tCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGc > 2:446231/1‑149 (MQ=255) gcgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGt < 1:2485064/149‑1 (MQ=255) gcgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGt < 1:2444234/149‑1 (MQ=255) cgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑g < 1:1074924/149‑1 (MQ=255) aTTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑gcc > 2:2299830/1‑149 (MQ=255) aTTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCGGCGT‑gcc > 2:2185112/1‑149 (MQ=255) gAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCgg > 2:4081456/1‑149 (MQ=255) gAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCGGCGT‑GCCG‑CCgg > 2:2484277/1‑149 (MQ=255) gcCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAg < 2:2727041/149‑1 (MQ=255) gcCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAg < 2:623025/149‑1 (MQ=255) ccATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAgg > 1:315622/1‑149 (MQ=255) cATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGt > 2:2613752/1‑149 (MQ=255) aTCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTGCGGCGG‑GCCG‑CCCGGCCGGtt > 1:3145079/1‑149 (MQ=255) aGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTcc < 1:3232353/149‑1 (MQ=255) gACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCa < 2:3337862/149‑1 (MQ=255) gggggCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGAcc < 2:1808796/149‑1 (MQ=255) ggggCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTTCGGCGG‑GGCG‑CCGGGCCGGGGTGCAGACCa > 1:828986/1‑149 (MQ=255) ggggCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGAccc > 2:2286125/1‑148 (MQ=255) cTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCtt < 2:3660866/149‑1 (MQ=255) ttCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCttt < 1:122757/149‑1 (MQ=255) ttCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTGGGGCGG‑GGCG‑CCGGGCCGGGTTTCAGACCaccgtt > 1:1152543/1‑144 (MQ=255) ttCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTGCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCttt > 2:2563350/1‑149 (MQ=255) tCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTc < 1:1729293/149‑1 (MQ=255) gCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCAt < 2:53679/149‑1 (MQ=255) gggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTAGGACGATTCGCCCCGGCGTAGAGTACTTCGCTTTGCTGTACCGCCGT‑GTCCGGCGG‑GCCG‑CCGGGCAGGGTTCCAGACCCGCGTGCCtgtg > 2:248702/1‑149 (MQ=255) ggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTCCATGTga < 2:3549997/149‑1 (MQ=255) cgcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTgaga < 2:3397122/149‑1 (MQ=255) gcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGAt < 2:2934072/149‑1 (MQ=255) cacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATa < 1:903680/149‑1 (MQ=255) aTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGGGGG‑GCGG‑CCGGGC‑GGGTTGCACACCACCGTTCAAGTGGGATTGCggg > 1:3462155/1‑148 (MQ=255) aTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTGCGGCGG‑GCCG‑CCGGGCCGGGTTGCAGACCCCCCTTAAAGTGAGATTGCggg > 1:2185577/1‑148 (MQ=255) tGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTg < 1:176312/149‑1 (MQ=255) tGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCATTCATGTGAGATAGCGGTg > 2:555635/1‑149 (MQ=255) gTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTGCGGCGG‑GCCG‑CCGGGGCGGTTTCCCCACCACCCTTCATGTGGGATATCGGGGtttt > 1:4019652/1‑149 (MQ=255) ttCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAtttt < 2:526812/149‑1 (MQ=255) ttCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAtttt < 2:195176/149‑1 (MQ=255) ttCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCCGCGT‑GCCG‑CCGCGCAGGGTTACAGACCAGCTTTCATGTGATATATACGTGAtttt > 2:3026884/1‑149 (MQ=255) ttCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTGCGGGCG‑GGCG‑CCGGGGCGGGTTGCACACCAGCGTTAATGTGTGGAGGCGGTGAtttt > 1:1487118/1‑149 (MQ=255) tCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTc < 1:1129929/149‑1 (MQ=255) tCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCGGCGG‑GCCG‑CCGGGCAGGGTTCCAGACCAGCGTTCATGTGAGATAGCGGGGGtttta > 2:3793527/1‑148 (MQ=255) ccTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTccc < 2:315622/149‑1 (MQ=255) ccTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTccc < 1:102309/149‑1 (MQ=255) ccTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTccc < 1:2177975/149‑1 (MQ=255) ccTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTGCGGCGG‑GCCG‑CCGGGCAGGTGTCCAGACCCCCGTTCATGTGAGGTATCGGGGCTTTTtcc > 2:361913/1‑149 (MQ=255) cTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTGCGGCGT‑GCCG‑CCCGGCCGGTTTCCAGACCACCGTTGATGTGAGATAGCGGGGGTTTTcccc > 1:2522594/1‑148 (MQ=255) ccGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGctc < 1:3544097/149‑1 (MQ=255) ggCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTg < 1:2377887/149‑1 (MQ=255) gCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCCGCGT‑GGCGCCCGGGCCGG‑TTACAGCCCACCATTCATGTGGGTTAGCCGGGGTTTTACCGCGCTgg > 1:3005166/1‑149 (MQ=255) aaaTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCGGCGT‑GCCC‑CCGGGCACGTTTCCAGACCAGCTTTAAAGTGAGATAGCGGTGATTTTGCCGCGCTGGTc > 2:475453/1‑149 (MQ=255) aGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCACCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCAcc > 2:2340787/1‑149 (MQ=255) ccGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGt < 1:281075/149‑1 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAtttt < 1:2705432/115‑1 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGAtttt > 2:2705432/1‑115 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCGTTCATGTGAGATAGCGGTGATTTTACCGCTCTGGTCGGCACCGATACGCAAGTGCTGa > 2:1352505/1‑149 (MQ=255) ggTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTGCGGCGTGGCCC‑CCGGGCCGG‑TTGCAGAACCCCCTTGCTGTGAGTTATCCGGGATTTTACCGCACGGGTCGGCCCCGAGAAGCCACTGCTGGAggg > 1:2228696/1‑149 (MQ=255) ggTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAggg < 1:1343069/149‑1 (MQ=255) gTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGt < 2:3352864/149‑1 (MQ=255) gTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTGTGCTGTACCGCCGT‑GTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGt < 2:3443774/149‑1 (MQ=255) tATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCGGCGT‑GCCG‑CCGGGCCGGTTTCCAGACCAGCGTTCATGTGAGATAGCGGTGATTTTCCCGCGCGGGTCGGCCCCGATACGCAAGTGCTGAAggggg > 2:2952594/1‑147 (MQ=255) aTGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑GTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTgg < 2:3421909/149‑1 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTggc < 1:2382384/149‑1 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTggc < 1:2299830/149‑1 (MQ=255) gACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTggcg < 2:1898308/149‑1 (MQ=255) aTTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTggcggggc < 1:456550/149‑1 (MQ=255) cGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGt < 1:3809237/149‑1 (MQ=255) cGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGt < 2:1077324/149‑1 (MQ=255) gCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTg < 2:3436522/149‑1 (MQ=255) ccccGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTGCGGCGT‑GCCG‑CCGGGCCGGTTTGCCGACCACCCTTCATTTGTGATATCGGGGATTTTACCGCGCTGGTCGGGACCGAGACGCAAGTGCTGAAGGGTGGGGGGGCGGTgg > 2:3874929/1‑148 (MQ=255) ccGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgt < 1:2386878/149‑1 (MQ=255) cGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtg < 1:2063723/149‑1 (MQ=255) cGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtg < 1:486853/149‑1 (MQ=255) cGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtg < 1:486915/149‑1 (MQ=255) ggCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtgg < 1:1994477/149‑1 (MQ=255) cGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCgtggtg < 1:4109687/149‑1 (MQ=255) gagTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑TCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTAt < 1:3173359/149‑1 (MQ=255) gTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTg < 2:888285/149‑1 (MQ=255) aaTTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTACCGCTCTGGTCGGCACCGATAAGCAAGTGCTGAAGGGTGGCGGGGGGGGGGGGGGGGTTATTggg > 2:1006620/1‑149 (MQ=255) aTTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGa < 2:2502180/149‑1 (MQ=255) tCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑TCCG‑CCGGGCAGGTTTCCAGAACAGCGTTCATTTGGGATAGCGGTGATTTTAACGCGCTGGTCGGCCCCGCTAAGCAAGTGCTGAAGGGTGGCGGGGGGGTGGGGGGGGTTATTGGGact > 2:545148/1‑147 (MQ=255) tCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAt < 2:828986/149‑1 (MQ=255) tCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAt < 1:1844276/149‑1 (MQ=255) tCGCTTTGCTGTACCGCCGG‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAt < 1:985262/149‑1 (MQ=255) cGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCCGGTTTGCAGAAAAGCTTTCATGTGAGATAGCGGTGATTTTACCCCGCTGGTCGGCACCGATACCCCAGTGCTGAAGGGTGGCGGGGCGGTGGGGGGGGGTATTGGGaaaa > 2:1509322/1‑147 (MQ=255) cGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATa < 1:3147852/149‑1 (MQ=255) cTTTGCTGTACCTCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATaga < 1:3957588/149‑1 (MQ=255) cTTTGCTGTACCGCCGT‑GTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGTTATAGCGGTGATTTTGCCCCTCTGGGGGGCACCGATAAGCCCGTGCTGAAGGGTGGGGGGGCGGGGGGGGGGGTTCTTggggagagt > 2:4006067/1‑143 (MQ=255) cTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGc < 1:3712732/149‑1 (MQ=255) ccgccgT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCggggg < 1:4081456/149‑1 (MQ=255) ccgccgT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCggggg < 1:2484277/149‑1 (MQ=255) cgccgT‑TTCCGGCGT‑GCCG‑CCGGGCTGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGa < 1:1006620/149‑1 (MQ=255) ccgT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGGGc > 1:3944123/1‑149 (MQ=255) cgT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCa < 2:3101735/149‑1 (MQ=255) t‑ttCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATc > 1:2831752/1‑149 (MQ=255) t‑ttCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATc > 2:2619199/1‑149 (MQ=255) ttCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATCa < 1:1098450/149‑1 (MQ=255) | CGTCGATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGT‑TTCCGGCGT‑GCCG‑CCGGGCAGGTTTCCAGACCAGCTTTCATGTGAGATAGCGGTGATTTTCCCGCTCTGGTCGGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATCA > CP009273/295547‑295843 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |