| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,413,119 | G→T | 40.9% | pseudogene (654/960 nt) | yhdW → | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,413,119 | 0 | G | T | 40.9% | 264.8 / 267.3 | 249 | pseudogene (654/960 nt) | yhdW | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (73/74); new base T (45/57); total (118/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.85e-01 | |||||||||||
Only 100 of 249 total aligned reads displayed.
TGCGATACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAA > CP009273/3412973‑3413265 | gCGATACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTAtt < 1:2521167/149‑1 (MQ=255) cGATACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTg < 2:2653308/149‑1 (MQ=255) gATACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGt > 2:1675248/1‑149 (MQ=255) gATACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGt > 2:1716115/1‑149 (MQ=255) aTACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTa > 2:872383/1‑149 (MQ=255) tACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTAc > 2:708697/1‑149 (MQ=255) cGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGc < 2:906631/149‑1 (MQ=255) gCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCt < 2:4104995/149‑1 (MQ=255) cTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTg < 1:3077847/149‑1 (MQ=255) ggCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGa > 2:2930144/1‑149 (MQ=255) cTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGc > 1:2647879/1‑149 (MQ=255) tCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCt < 1:3930044/149‑1 (MQ=255) tCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCt < 1:2004136/149‑1 (MQ=255) cGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCtt < 2:851331/149‑1 (MQ=255) cGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCtt < 2:3369012/149‑1 (MQ=255) atcaatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTc < 1:1699321/149‑1 (MQ=255) atcaatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTc < 1:904869/149‑1 (MQ=255) atcaatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTc < 2:2139227/149‑1 (MQ=255) atcaatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTc > 2:4004902/1‑149 (MQ=255) tcaatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCg > 2:2010190/1‑149 (MQ=255) aatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGcc > 1:1613269/1‑149 (MQ=255) aatcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGcc > 1:983057/1‑149 (MQ=255) atcaCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCa < 2:3386633/149‑1 (MQ=255) aaCTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCatgctg > 2:1464512/1‑149 (MQ=255) aaCTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCatgctg > 2:2694837/1‑149 (MQ=255) cTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCatgctgaa < 1:2398367/149‑1 (MQ=255) gTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCatgctgaatg > 2:2900448/1‑149 (MQ=255) aTGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCatgctgaatgct < 2:3217653/149‑1 (MQ=255) gcgcATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAgaga < 2:1760590/149‑1 (MQ=255) cgcATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGAt < 1:478620/149‑1 (MQ=255) gcATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATg > 1:1919657/1‑149 (MQ=255) cATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATgt > 1:2254718/1‑148 (MQ=255) cATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATgg > 1:788728/1‑149 (MQ=255) aTCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATggg > 1:3979511/1‑149 (MQ=255) aaTTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATc > 1:2589718/1‑149 (MQ=255) aTTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCa > 2:698266/1‑149 (MQ=255) tAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAAt < 2:3437459/149‑1 (MQ=255) aaGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAAtt < 2:1680271/149‑1 (MQ=255) aGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTc < 2:1433560/149‑1 (MQ=255) cTGAATGGATTGTCTTACCGGCAGTTATCTCAAAATAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTc < 1:2994303/149‑1 (MQ=255) tGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCg > 2:210854/1‑149 (MQ=255) tGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCg > 2:1955181/1‑149 (MQ=255) tGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCg > 2:782411/1‑149 (MQ=255) gAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGa > 1:3397038/1‑149 (MQ=255) aaTGGAGTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGGTGAAGAGATGGGCATCAATTCCCAGAACGTCGAt < 1:676840/149‑1 (MQ=255) gATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGaaa > 2:1994495/1‑149 (MQ=255) gATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGaaa > 2:1959729/1‑149 (MQ=255) ttGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGaaaaa > 2:394375/1‑149 (MQ=255) ttGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGaaaaa < 2:367292/149‑1 (MQ=255) tGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAg < 2:3974106/149‑1 (MQ=255) gTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAAAGTCGATGAAAAAGc > 1:390287/1‑149 (MQ=255) tCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCg < 2:2297083/149‑1 (MQ=255) tCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCg > 2:1025305/1‑149 (MQ=255) cTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCgg < 2:1039295/149‑1 (MQ=255) cTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCgg < 2:4038555/149‑1 (MQ=255) cTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGAATCAATTCCCAGAACGTCGATGAAAAAGCgg < 1:702008/149‑1 (MQ=255) ttACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGc > 1:3060898/1‑149 (MQ=255) aCCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTa > 2:3697374/1‑149 (MQ=255) gAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATcc < 2:2274318/149‑1 (MQ=255) ttATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTATTCCAGCa > 1:3731100/1‑149 (MQ=255) aTCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAAc > 2:1812357/1‑149 (MQ=255) tctcAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTACCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACg > 1:120973/1‑149 (MQ=255) tcAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCTATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTTAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGcc < 1:3105384/149‑1 (MQ=255) tcAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGcc < 1:551889/149‑1 (MQ=255) tcAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGcc < 1:3124924/149‑1 (MQ=255) tcAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGcc < 2:221271/149‑1 (MQ=255) aGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGata > 2:2617415/1‑149 (MQ=255) aGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGata > 2:3799398/1‑149 (MQ=255) gAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGatat < 1:2112599/149‑1 (MQ=255) aCCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATgg < 2:3481253/149‑1 (MQ=255) aCCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATgg < 2:1919657/149‑1 (MQ=255) ccGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGc > 1:2711797/1‑149 (MQ=255) gCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGcac > 1:3236534/1‑149 (MQ=255) cTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGcaca < 1:1489783/149‑1 (MQ=255) ggTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATct < 1:141272/149‑1 (MQ=255) cGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATctgctg < 1:1537126/149‑1 (MQ=255) ggTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTgg > 1:1615202/1‑149 (MQ=255) aGTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTa < 2:463475/149‑1 (MQ=255) aGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTa < 1:3771640/149‑1 (MQ=255) gTTCGTCGTGGCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTaa > 2:426658/1‑149 (MQ=255) ttCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTaaa > 1:2771288/1‑149 (MQ=255) ttCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCAAGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTaaa > 1:709317/1‑149 (MQ=255) tcgtGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCTCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAaagaag < 2:2123471/149‑1 (MQ=255) gCGATGATGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGAt < 2:2163390/149‑1 (MQ=255) gCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGAt < 1:365998/149‑1 (MQ=255) gatgatGAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAATGCGATTa > 1:3833054/1‑149 (MQ=255) atgatgAATGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTAc < 1:2295111/149‑1 (MQ=255) atgaATGTTTCTCGATTGTACGCTGGACGCTTTTCCCCAAGCTGAATGCTGAAGAGATGGGCATCAAATCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGAAATGGCACATCTGCTGCGTAAAGAAGGCGATTACGGc > 2:123262/1‑149 (MQ=255) atgaATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGc < 1:1075939/149‑1 (MQ=255) aaTGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAg > 2:310758/1‑149 (MQ=255) aaTGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAg > 1:4028714/1‑149 (MQ=255) aTGGTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAgg < 1:2789094/149‑1 (MQ=255) aTGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAgg > 2:2431123/1‑149 (MQ=255) aTGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCGGGGTAAAGAAGGCGATTACGGCAAgg > 2:3820571/1‑149 (MQ=255) tGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGa > 2:2097662/1‑149 (MQ=255) ggTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGAt < 2:453767/149‑1 (MQ=255) gTTCTCTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATc < 2:3018030/149‑1 (MQ=255) ttCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCt > 2:3255963/1‑149 (MQ=255) tctcTATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTg > 1:3481437/1‑149 (MQ=255) tctcGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTg < 1:3799415/149‑1 (MQ=255) | TGCGATACGCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAAGTTATCTCAAAAGAACCGCTTGGTCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAA > CP009273/3412973‑3413265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |