| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,487,342 | C→T | 100% | intergenic (+234/‑28) | tsgA → / → nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,487,342 | 0 | C | T | 99.6% | 773.7 / ‑5.1 | 236 | intergenic (+234/‑28) | tsgA/nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (121/114); total (121/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 241 total aligned reads displayed.
TGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTGAAGAAC > CP009273/3487196‑3487487 | gTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAggtggt > 1:1065939/1‑149 (MQ=255) gTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAggtggt > 1:2810712/1‑149 (MQ=255) cTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTaa < 2:2016817/149‑1 (MQ=255) cTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTaa < 1:3117076/149‑1 (MQ=255) tATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAAt > 2:3648158/1‑149 (MQ=255) aTTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATa > 2:3930621/1‑149 (MQ=255) ttttttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGACTCGGTAAGGTAGGTGGTAATag > 2:2154281/1‑149 (MQ=255) ttttttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATag > 2:10955/1‑149 (MQ=255) ttttttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATag > 2:1915831/1‑149 (MQ=255) tttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaa > 1:154408/1‑149 (MQ=255) ttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaa < 2:2970335/149‑1 (MQ=255) ttGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaa < 2:2628427/149‑1 (MQ=255) gCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaaga < 1:1568558/149‑1 (MQ=255) gCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaaga > 2:548805/1‑149 (MQ=255) cacaAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGCAGTATATAAAGGTGAATTTGATTTACATCAAAAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaagaa > 1:2730826/1‑149 (MQ=255) acaAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATagaaaagaaa > 1:38556/1‑149 (MQ=255) caAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAAt < 1:860360/149‑1 (MQ=255) caAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAAt < 1:3471679/149‑1 (MQ=255) cATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAg < 1:1882363/149‑1 (MQ=255) tGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGc < 1:1229409/149‑1 (MQ=255) gAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCa < 2:2281848/149‑1 (MQ=255) aaaTATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCaa < 1:1652802/149‑1 (MQ=255) atCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAAt < 1:2513938/149‑1 (MQ=255) tCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATg > 1:3219769/1‑149 (MQ=255) gACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGc > 1:234108/1‑149 (MQ=255) gACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGc > 1:977320/1‑149 (MQ=255) gACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGc < 2:3411009/149‑1 (MQ=255) aTTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAg > 2:586332/1‑149 (MQ=255) cGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAg > 2:3074259/1‑149 (MQ=255) gACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACt < 2:1403643/149‑1 (MQ=255) aCTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGATTTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAAGAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTc < 2:206444/149‑1 (MQ=255) cTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCg > 2:2490892/1‑149 (MQ=255) ttAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGc < 2:1985058/149‑1 (MQ=255) aaaTTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTAt > 1:825059/1‑149 (MQ=255) tttATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCgg > 1:499663/1‑149 (MQ=255) cAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACgg < 1:1554016/149‑1 (MQ=255) aaTCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTa < 2:316932/149‑1 (MQ=255) aaTCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTa < 2:3820240/149‑1 (MQ=255) aaTCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTa > 2:1386758/1‑149 (MQ=255) aTCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTAt > 1:376712/1‑149 (MQ=255) aaTATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCgg > 2:2400400/1‑149 (MQ=255) atatACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGc < 2:937187/149‑1 (MQ=255) tataCCCATTAAGGAGTATATTAAGGTGAATTTGATTTACATCAATAAGCGTGGTTGCTGAATCGTTAAGGTAGGTTGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGcc < 1:4009466/149‑1 (MQ=255) tataCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGcc > 2:7710/1‑149 (MQ=255) tataCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGcc > 1:2535764/1‑149 (MQ=255) taCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCAt > 1:4090236/1‑149 (MQ=255) taCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCAt > 1:4090095/1‑149 (MQ=255) taCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCAt > 2:879445/1‑149 (MQ=255) aCCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATc > 1:2024369/1‑149 (MQ=255) ccATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGc < 2:2085701/149‑1 (MQ=255) aTTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCtt < 2:1407103/149‑1 (MQ=255) ttAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCttt > 1:549249/1‑149 (MQ=255) ttAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCttt > 1:2163236/1‑149 (MQ=255) aaGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTAt > 1:3361997/1‑149 (MQ=255) aaGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTAt < 1:2312983/149‑1 (MQ=255) ggAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCg < 1:1018135/149‑1 (MQ=255) ggAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCg < 1:3074259/149‑1 (MQ=255) aGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGaa < 1:1415782/149‑1 (MQ=255) gTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAg < 2:2741136/149‑1 (MQ=255) gTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAg > 2:1794190/1‑149 (MQ=255) atataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAt > 1:2972255/1‑149 (MQ=255) tataAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtc > 1:1488727/1‑149 (MQ=255) taAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtctt > 1:275921/1‑149 (MQ=255) aaaGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtcttc > 1:1603806/1‑149 (MQ=255) aaGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtcttct > 1:2632639/1‑149 (MQ=255) aaGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGAtcttct > 1:2632402/1‑149 (MQ=255) gTGACTTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGa < 2:430556/149‑1 (MQ=255) gAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATa > 2:3307083/1‑149 (MQ=255) tttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAAt > 1:1132228/1‑149 (MQ=255) ttGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATc < 2:2846987/149‑1 (MQ=255) ttACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATg < 1:1239150/149‑1 (MQ=255) aCATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCg < 2:2632639/149‑1 (MQ=255) tCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGcc < 1:3232950/149‑1 (MQ=255) aaTAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCaa > 2:2478245/1‑149 (MQ=255) aTAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAAc > 2:1535179/1‑149 (MQ=255) aTAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAAc > 2:1535356/1‑149 (MQ=255) aTAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAAc < 2:156278/149‑1 (MQ=255) tAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACt < 2:3111996/149‑1 (MQ=255) tAAGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACt > 2:3515113/1‑149 (MQ=255) aaGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACtt > 2:1827704/1‑149 (MQ=255) aGCGGGGTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACttt < 2:759192/149‑1 (MQ=255) ggTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGatat < 2:210289/149‑1 (MQ=255) gTTGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATAtt < 2:3832728/149‑1 (MQ=255) gTTGCTGAATCGTGAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATGATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTGGATAAATCTGATGCGGCCAACTTTGATAtt < 1:3570725/149‑1 (MQ=255) ttGCTGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTa < 1:2146225/149‑1 (MQ=255) tGAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGt > 2:12760/1‑149 (MQ=255) gAATCGTTAAGGTATGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGtt < 1:1797195/149‑1 (MQ=255) gAATCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGtt > 1:452887/1‑149 (MQ=255) aaTCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGttt < 2:376712/149‑1 (MQ=255) aTCGATAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAACATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGGATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGtttt < 1:2378516/149‑1 (MQ=255) tCGTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTc < 1:2918481/149‑1 (MQ=255) gTTAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCtg > 2:1316927/1‑149 (MQ=255) ttAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCtgt < 1:1317262/149‑1 (MQ=255) ttAAGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCtgt < 1:3366172/149‑1 (MQ=255) aaGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTga > 1:2834055/1‑149 (MQ=255) aaGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTga > 2:2511630/1‑149 (MQ=255) aaGGTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTGTGATATTACCGTTTTCTGTga > 2:162344/1‑149 (MQ=255) aggtaggtGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaa > 2:1054428/1‑149 (MQ=255) ggTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaag > 2:3854693/1‑149 (MQ=255) ggTAGGTGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTgaag > 2:630267/1‑149 (MQ=255) | TGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTAGGCGGTAATAGAAAAGAAATCGAGGCAAAAATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTGATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTGAAGAAC > CP009273/3487196‑3487487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |