| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,452,965 | A→G | 6.7% | Y423C (TAT→TGT) | gspE → | general secretory pathway component, cryptic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,452,965 | 0 | A | G | 6.7% | 592.5 / 27.8 | 193 | Y423C (TAT→TGT) | gspE | general secretory pathway component, cryptic |
| Reads supporting (aligned to +/- strand): ref base A (109/71); new base G (8/5); total (117/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
Only 100 of 199 total aligned reads displayed.
CGCAACGTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTGAT > CP009273/3452818‑3453112 | cgcAACGTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTa > 2:2305259/1‑148 (MQ=255) cAACGTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATc > 2:611595/1‑148 (MQ=255) cAACGTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATc > 2:610872/1‑148 (MQ=255) gTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAggg < 2:2246626/148‑1 (MQ=255) tCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAgggg < 2:3280612/148‑1 (MQ=255) ggTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGgcgc > 1:1992541/1‑148 (MQ=255) gTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCa < 1:2690622/148‑1 (MQ=255) gTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCa < 1:1397416/148‑1 (MQ=255) gTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCa < 1:577619/148‑1 (MQ=255) tcgtcgCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATg < 1:1878003/148‑1 (MQ=255) tcgCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCg < 1:371591/148‑1 (MQ=255) cgCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGa > 2:2426830/1‑148 (MQ=255) cgCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGa > 2:723131/1‑148 (MQ=255) gCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGAt < 1:3481529/148‑1 (MQ=255) ccTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATc < 2:2485553/148‑1 (MQ=255) ccTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATc > 2:1668279/1‑148 (MQ=255) cTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATcc < 2:644993/148‑1 (MQ=255) tgtgTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCa > 1:935268/1‑148 (MQ=255) tgtgTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCa > 1:3190017/1‑148 (MQ=255) gtgtCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCAc > 1:774532/1‑148 (MQ=255) tCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGaa > 1:3239767/1‑148 (MQ=255) ccGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTGTCAGGGGCGCATGGCGATCCACGaaa > 2:508041/1‑148 (MQ=255) gCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTGTCAGGGGCGCATGGCGATCCACGAAatg < 2:3096017/148‑1 (MQ=255) cAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatgt > 1:1175506/1‑147 (MQ=255) cAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatga < 1:62415/148‑1 (MQ=255) cAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatga > 1:1174739/1‑148 (MQ=255) ccGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGAtggtg > 1:1325226/1‑148 (MQ=255) gACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTGTCAGGGGCGCATGGCGATCCACGAAATGATggtggt > 1:2127690/1‑148 (MQ=255) cAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGa < 2:2980108/148‑1 (MQ=255) cAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGa > 1:1351452/1‑148 (MQ=255) aTTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACg < 2:2152614/148‑1 (MQ=255) ttCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACACTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGc < 2:2297317/148‑1 (MQ=255) tCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGcc < 2:896102/148‑1 (MQ=255) tCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGcc < 2:3087107/148‑1 (MQ=255) gCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGaa < 2:3210970/148‑1 (MQ=255) cccGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAt > 1:1191710/1‑148 (MQ=255) ccGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAtt > 2:199803/1‑148 (MQ=255) tCACCCCAACAAGCGCAGATGTGTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACggg > 1:2195680/1‑148 (MQ=255) cACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGc > 1:1784730/1‑148 (MQ=255) cccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGc > 2:195411/1‑148 (MQ=255) cccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGc > 2:2984675/1‑148 (MQ=255) ccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCt < 2:1767621/148‑1 (MQ=255) ccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCt > 1:2242948/1‑148 (MQ=255) ccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCt < 2:1070560/148‑1 (MQ=255) caacaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTa < 2:2284479/148‑1 (MQ=255) acaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTAtt < 1:808965/148‑1 (MQ=255) acaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTAtt > 1:3322092/1‑148 (MQ=255) acaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTAtt > 2:628112/1‑148 (MQ=255) aaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCa < 2:2595232/148‑1 (MQ=255) gTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAAtgtg > 1:1520339/1‑148 (MQ=255) catcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGACTTACGGGCCGCTATTCATGAAAATGTGGATGAACAAg > 1:2948775/1‑148 (MQ=255) atcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGc < 2:267829/148‑1 (MQ=255) aGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACt > 1:1044383/1‑148 (MQ=255) cTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTgg > 2:2877714/1‑148 (MQ=255) cTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTgg > 2:591981/1‑148 (MQ=255) cTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTgg > 1:3075046/1‑148 (MQ=255) gcgGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGc < 2:3243090/148‑1 (MQ=255) ggTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGa < 1:1133778/148‑1 (MQ=255) caacaaTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGt > 1:986562/1‑148 (MQ=255) caacaaTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGt > 2:789721/1‑148 (MQ=255) aacaaTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTc > 2:2644029/1‑148 (MQ=255) aacaaTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTc > 2:2507489/1‑148 (MQ=255) aacaaTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTc > 2:863749/1‑148 (MQ=255) acaaTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTcc > 2:1624946/1‑148 (MQ=255) aTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTGTCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGc > 1:240332/1‑148 (MQ=255) aTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGc > 2:2719304/1‑148 (MQ=255) aTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGc > 2:2111942/1‑148 (MQ=255) aTTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGc > 2:2265326/1‑148 (MQ=255) ttGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGca > 2:2813111/1‑148 (MQ=255) tGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGcaa < 2:1515724/148‑1 (MQ=255) tGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGcaa > 1:2081552/1‑148 (MQ=255) tGGCACTCCCGTAGGCTGCCCTCATAGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGcaa > 1:2332251/1‑148 (MQ=255) ggCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGcaac > 2:1384577/1‑148 (MQ=255) ggCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGcaac > 2:3153649/1‑148 (MQ=255) cTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAacaaca > 1:2880993/1‑148 (MQ=255) tCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTGTCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAacac > 1:1923931/1‑148 (MQ=255) tCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAacac > 1:3127792/1‑148 (MQ=255) cccGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAAcaca < 1:1084170/148‑1 (MQ=255) aGGCTGCCCTCATTGCCATCAATCCGGCTGTCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGcc < 2:2126973/148‑1 (MQ=255) aGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGcc < 2:935268/148‑1 (MQ=255) gCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCtt > 2:1220830/1‑148 (MQ=255) gCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCtt > 1:240618/1‑148 (MQ=255) tGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTaa < 1:3258909/148‑1 (MQ=255) tGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTaa < 1:284669/148‑1 (MQ=255) ccTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCa > 1:1687964/1‑148 (MQ=255) ccTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCa > 1:2035762/1‑148 (MQ=255) cTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCaa < 2:3493448/148‑1 (MQ=255) tCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCaaa > 1:2008764/1‑148 (MQ=255) tCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCaaa < 1:921822/148‑1 (MQ=255) tCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCaaa > 1:2523803/1‑148 (MQ=255) cATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCaaaa > 2:2615451/1‑148 (MQ=255) gCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATgg < 1:2219265/148‑1 (MQ=255) gCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGt > 2:3053712/1‑148 (MQ=255) gCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGt < 1:1009907/148‑1 (MQ=255) gCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGt > 1:2473766/1‑148 (MQ=255) cTATCAGGGGCGCATGGCGATCCACGAATTGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTg < 2:2444986/148‑1 (MQ=255) cTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTg < 2:117647/148‑1 (MQ=255) tATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTGa < 1:3120098/148‑1 (MQ=255) aTCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTGAt < 1:506664/148‑1 (MQ=255) aTCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTGAt < 2:2243745/148‑1 (MQ=255) | CGCAACGTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGCGACTAGTCCGGCAACAACACAAGGCCTTAATCAAAAATGGCCTGCAAAAAGTGAT > CP009273/3452818‑3453112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |