| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,466,427 | C→A | 30.5% | A149A (GCG→GCT) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,466,427 | 0 | C | A | 30.5% | 352.7 / 132.5 | 186 | A149A (GCG→GCT) | fusA | protein chain elongation factor EF‑G, GTP‑binding |
| Reads supporting (aligned to +/- strand): ref base C (61/68); new base A (26/31); total (87/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 187 total aligned reads displayed.
TGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATGGAACGT > CP009273/3466281‑3466574 | ggTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGc > 2:209387/1‑148 (MQ=255) ggTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTATTAAGCACCAAACCCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACATTCAGGAAGTTAGc > 1:1384520/1‑148 (MQ=255) aGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCAccc < 2:429251/148‑1 (MQ=255) gCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCa < 1:2319939/148‑1 (MQ=255) gCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCa < 1:2949509/148‑1 (MQ=255) cgtcgtTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCAt < 2:2518610/148‑1 (MQ=255) gtcgtTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATg < 1:839043/148‑1 (MQ=255) cgtTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCg > 2:1995445/1‑148 (MQ=255) gtTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCgg < 2:2968187/148‑1 (MQ=255) tCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTc < 1:2685204/148‑1 (MQ=255) tCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTc > 2:1135924/1‑148 (MQ=255) tCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTc > 2:3179490/1‑148 (MQ=255) tCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTc > 1:848615/1‑148 (MQ=255) ccAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTcc < 1:1550485/148‑1 (MQ=255) cAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCa < 1:3256832/148‑1 (MQ=255) aGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCAt > 1:1318034/1‑148 (MQ=255) gTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCAtt > 2:1043937/1‑148 (MQ=255) gATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTg < 1:1736561/148‑1 (MQ=255) aGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTa < 1:2413879/148‑1 (MQ=255) cTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTaac > 1:2911021/1‑148 (MQ=255) cTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTaac > 1:16649/1‑148 (MQ=255) cTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTaac > 1:2641964/1‑148 (MQ=255) tCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTaacgaa > 2:2665371/1‑148 (MQ=255) aTTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTaacgaacg < 2:1988995/148‑1 (MQ=255) aTTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTaacgaacg > 2:3285627/1‑148 (MQ=255) tttCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCa < 1:1460100/148‑1 (MQ=255) ttCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCaa > 2:636227/1‑148 (MQ=255) cACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTCACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATg < 1:254331/148‑1 (MQ=255) cACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATg < 1:254199/148‑1 (MQ=255) ccAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATgcg > 2:1532848/1‑148 (MQ=255) ccAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATgcg > 1:3012067/1‑148 (MQ=255) cAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATgcgc > 1:491800/1‑148 (MQ=255) aGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGcgcg > 2:1917479/1‑148 (MQ=255) caacaaCACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAAc > 2:2670679/1‑148 (MQ=255) caacaCCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACttt > 1:120456/1‑148 (MQ=255) caacaCCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACttt < 1:3135305/148‑1 (MQ=255) acacCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTtat < 1:548647/148‑1 (MQ=255) acacCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTtat < 1:2737560/148‑1 (MQ=255) acacCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTtat < 2:1241704/148‑1 (MQ=255) cacCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTtata < 1:1003791/148‑1 (MQ=255) cacCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTtata < 2:3542114/148‑1 (MQ=255) cacCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTtata < 2:3542087/148‑1 (MQ=255) ggTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATAtttg < 1:933999/148‑1 (MQ=255) gTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATAtttgt < 1:127924/148‑1 (MQ=255) tGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATAtttgtt < 1:1890866/148‑1 (MQ=255) gAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATAtttgttt > 1:747742/1‑148 (MQ=255) aaaTGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATAtttgtttg < 2:286698/148‑1 (MQ=255) aaaTGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATAtttgtttg < 2:120456/148‑1 (MQ=255) aaTGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGc < 1:44101/148‑1 (MQ=255) aTGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGcc > 2:3119123/1‑148 (MQ=255) tGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCt < 2:1558400/148‑1 (MQ=255) gTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTg < 1:1121019/148‑1 (MQ=255) cttcAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACg < 2:274700/148‑1 (MQ=255) cttcAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACg < 2:279401/148‑1 (MQ=255) tcAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGcc > 1:1021170/1‑148 (MQ=255) aGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCAt < 1:2614134/148‑1 (MQ=255) aGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCAt < 1:707182/148‑1 (MQ=255) aCCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACg < 1:1384364/148‑1 (MQ=255) cAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGt < 2:903045/148‑1 (MQ=255) aaTCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGtt < 2:634912/148‑1 (MQ=255) aTCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGttt < 2:1315385/148‑1 (MQ=255) tCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTc > 2:1411717/1‑148 (MQ=255) cAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGAc > 2:121246/1‑148 (MQ=255) cAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGAc > 1:280395/1‑148 (MQ=255) gCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTg > 1:2219804/1‑148 (MQ=255) cAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGc > 2:2176753/1‑148 (MQ=255) cGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGa > 1:405345/1‑148 (MQ=255) ccGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAAcacc < 1:2888697/148‑1 (MQ=255) gTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACAccacca < 1:3491998/148‑1 (MQ=255) ttCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCaa > 2:2038002/1‑148 (MQ=255) gcgcCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTg < 1:906386/148‑1 (MQ=255) cccAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTgcgc > 1:1478756/1‑148 (MQ=255) aCGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTaa > 1:1805794/1‑148 (MQ=255) aCGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTaa > 1:1805816/1‑148 (MQ=255) ggTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAAcc > 2:2014776/1‑148 (MQ=255) ggTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAAcc > 2:2014771/1‑148 (MQ=255) ggTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAAcc < 1:3179490/148‑1 (MQ=255) tttGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCAtt < 1:1995445/148‑1 (MQ=255) tttGATCTGGTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCAtt < 2:3231570/148‑1 (MQ=255) ttGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTa < 1:2462794/148‑1 (MQ=255) cTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCa > 2:3294373/1‑148 (MQ=255) ggTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCAcc > 1:3372672/1‑148 (MQ=255) ggTTAACAACTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCAcc > 1:3372698/1‑148 (MQ=255) caacTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCgag < 2:1392298/148‑1 (MQ=255) aacTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCgaga < 1:78031/148‑1 (MQ=255) cTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAac < 2:1805794/148‑1 (MQ=255) cTTTCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAac > 2:793212/1‑148 (MQ=255) tttCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAcca < 2:3343334/148‑1 (MQ=255) tttCAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAaca < 2:3277720/148‑1 (MQ=255) tCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACg > 2:3226554/1‑148 (MQ=255) tCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACg < 1:3047282/148‑1 (MQ=255) cAGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGc < 1:1686186/148‑1 (MQ=255) aGGAAGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCa < 1:650582/148‑1 (MQ=255) ggAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCAt < 2:2929684/148‑1 (MQ=255) gAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATg > 2:1493709/1‑148 (MQ=255) gAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATg > 2:882532/1‑148 (MQ=255) aGTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATGGa < 2:3012067/148‑1 (MQ=255) gTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATGGaa < 2:2455526/148‑1 (MQ=255) gTTAGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATGGaa < 2:1605877/148‑1 (MQ=255) cGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATGGAACGt < 1:1043937/148‑1 (MQ=255) | TGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCCCAGACGGGTTTTGATCTGGTTAACAACTTTCAGGAAGTTCGCACCCATGCGGTCCATTTTGTTAACGAACGCAATGCGCGGAACTTTATATTTGTTTGCCTGACGCCATACGGTTTCAGACTGCGGCTGAACACCACCAACTGCGCAGTAAACCATTACCGCACCATCGAGAACACGCATGGAACGT > CP009273/3466281‑3466574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |