| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,594,268 | C→T | 100% | intergenic (‑125/+120) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,594,268 | 0 | C | T | 95.1% | 590.5 / 15.9 | 184 | intergenic (‑125/+120) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (7/2); new base T (90/85); total (97/87) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 184 total aligned reads displayed.
ACTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAA > CP009273/3594123‑3594412 | aCTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTaa < 1:1264043/148‑1 (MQ=255) gCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtg > 2:1104509/1‑148 (MQ=255) gCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtg < 1:1184131/148‑1 (MQ=255) cATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtgt < 2:769574/148‑1 (MQ=255) cATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTtgt < 1:577522/148‑1 (MQ=255) ttttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGa < 1:2146147/148‑1 (MQ=255) ttttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGa > 1:2187025/1‑148 (MQ=255) ttttGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGa > 1:1422757/1‑148 (MQ=255) gtcagtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATaa < 2:1780243/148‑1 (MQ=255) tcagtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCATCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATaaa < 1:665352/148‑1 (MQ=255) agtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAAtt > 1:671744/1‑148 (MQ=255) gtcaTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTa < 2:1978988/148‑1 (MQ=255) caTTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACg < 1:1165369/148‑1 (MQ=255) ttCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGca > 2:494387/1‑148 (MQ=255) ttCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGca < 1:1300897/148‑1 (MQ=255) aaaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaa > 2:3096068/1‑148 (MQ=255) aaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaa < 2:1079957/148‑1 (MQ=255) aaTCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACaaa < 2:293446/148‑1 (MQ=255) ctctCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgt > 1:498825/1‑148 (MQ=255) tctcAATCGCTATCGTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCATCGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgtg < 2:1949073/148‑1 (MQ=255) tctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgtg > 2:356720/1‑148 (MQ=255) tctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAAtgtg < 2:1157120/148‑1 (MQ=255) ctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGa > 1:352836/1‑148 (MQ=255) ctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGa > 1:96742/1‑148 (MQ=255) ctcAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGa > 2:2955998/1‑148 (MQ=255) aaTCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACAt < 2:2926872/148‑1 (MQ=255) tCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATag > 1:1308463/1‑148 (MQ=255) tCGAGATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATag < 2:1543611/148‑1 (MQ=255) atatCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAgaga < 1:1965058/148‑1 (MQ=255) atatCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAgaga > 2:2072733/1‑148 (MQ=255) tcttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGa > 2:2096272/1‑148 (MQ=255) tcttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGa > 2:3186750/1‑148 (MQ=255) cttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaa > 2:2714650/1‑148 (MQ=255) ttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaaa < 1:2556839/148‑1 (MQ=255) ttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaaa < 2:110226/148‑1 (MQ=255) ttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaaa < 2:1666985/148‑1 (MQ=255) ttctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGaaa > 2:1705271/1‑148 (MQ=255) ctGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATa < 2:280215/148‑1 (MQ=255) ggCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATAcc < 2:1910031/148‑1 (MQ=255) gcgcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCg > 2:3102486/1‑148 (MQ=255) gcgcTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCg > 1:1479793/1‑148 (MQ=255) cTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGa < 2:2456309/148‑1 (MQ=255) ttCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGaa > 1:3344821/1‑148 (MQ=255) ttCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGaa > 1:1583975/1‑148 (MQ=255) ttCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGaa > 1:77004/1‑148 (MQ=255) gTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAgaga > 1:1867251/1‑148 (MQ=255) gTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAgaga > 2:2870482/1‑148 (MQ=255) tGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGAc > 1:373565/1‑148 (MQ=255) ggTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACa > 1:1618301/1‑148 (MQ=255) gTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACaa < 2:935780/148‑1 (MQ=255) gCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACgg > 1:1145615/1‑148 (MQ=255) gCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACgg > 2:49261/1‑148 (MQ=255) gCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACgg > 1:1480368/1‑148 (MQ=255) cTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct < 1:1290237/148‑1 (MQ=255) cTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct < 1:721761/148‑1 (MQ=255) cTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct > 2:1292648/1‑148 (MQ=255) gtgCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCttt < 1:2523543/148‑1 (MQ=255) tgCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTc < 1:901995/148‑1 (MQ=255) gCCAGAGCTTAAGAGCAACGAGGTTATCACTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTcc < 2:100564/148‑1 (MQ=255) gagCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGc < 1:1848963/148‑1 (MQ=255) tAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACgg > 2:1069146/1‑148 (MQ=255) gCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAAccc < 2:2602362/148‑1 (MQ=255) cAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCa < 1:2954990/148‑1 (MQ=255) cAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCa > 1:1526001/1‑148 (MQ=255) cAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTACCTGCTACGGAACCCa > 1:1525952/1‑148 (MQ=255) cGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTg > 1:3225206/1‑148 (MQ=255) ggTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAg < 2:1843012/148‑1 (MQ=255) ggTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAg > 1:154935/1‑148 (MQ=255) tATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGa > 1:2668645/1‑148 (MQ=255) aTTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAaga < 1:2582532/148‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt > 1:3288116/1‑148 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 2:609230/148‑1 (MQ=255) tCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt > 1:130243/1‑148 (MQ=255) cACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGta > 1:487378/1‑148 (MQ=255) gTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAac > 2:2063144/1‑148 (MQ=255) tATCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGc < 1:878245/148‑1 (MQ=255) aTCAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCt < 2:1348359/148‑1 (MQ=255) aTCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCt < 2:1308463/148‑1 (MQ=255) aTCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCt < 2:3078874/148‑1 (MQ=255) cAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCttt > 1:1077376/1‑148 (MQ=255) cAGACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAGTGCAGGGAAAGAGTATAACACGCttt > 2:2223197/1‑148 (MQ=255) gACCGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTtta < 1:494387/148‑1 (MQ=255) ccGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATACATTACGCACAAAATGTGACATAGAGATGAAATACCGGGCAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatt > 2:1788284/1‑148 (MQ=255) cGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGc > 2:2259982/1‑140 (MQ=255) cGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGc < 1:2259982/140‑1 (MQ=255) cGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatta > 1:1746815/1‑148 (MQ=255) cGTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTttatta > 1:2480645/1‑148 (MQ=255) gTGATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTtattat < 2:3531998/148‑1 (MQ=255) gATTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTc > 1:1781861/1‑148 (MQ=255) aTTTTATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCa < 1:356720/148‑1 (MQ=255) ttttATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAg < 2:3324591/148‑1 (MQ=255) tttATCCACAAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAATGCAGGGAAAGAGTATAACACGCTTTTATTATTCAgg > 1:16476/1‑148 (MQ=255) cacaAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTaaa < 1:3096068/148‑1 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt < 1:3417007/148‑1 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt < 1:3416949/148‑1 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt > 2:1744741/1‑148 (MQ=255) caAGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTACCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGt > 1:1860154/1‑148 (MQ=255) aGTTCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTgg < 2:1422757/148‑1 (MQ=255) ttCAATGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCg > 2:1632929/1‑148 (MQ=255) aTGTAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTaaa > 2:887476/1‑148 (MQ=255) | ACTTTGCATTTTGTCAGTCATTCAAATCCTCTCAATCGATATCTTCTGGCGCTTCAGTGGTAGCAACAACTGTGCCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAA > CP009273/3594123‑3594412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |