| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,724,487 | C→T | 6.2% | intergenic (‑362/‑4) | xylA ← / → xylF | D‑xylose isomerase/D‑xylose transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,724,487 | 0 | C | T | 6.2% | 753.7 / 24.3 | 209 | intergenic (‑362/‑4) | xylA/xylF | D‑xylose isomerase/D‑xylose transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (116/80); new base T (8/5); total (124/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
Only 100 of 211 total aligned reads displayed.
GTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTTGTG > CP009273/3724341‑3724634 | cATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACAcc < 2:1641967/148‑1 (MQ=255) cATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACAcc > 2:2267505/1‑148 (MQ=255) aaaTCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTATACCATg > 1:1245864/1‑148 (MQ=255) aTCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGaa > 1:345395/1‑148 (MQ=255) tCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGaaa < 2:2538070/148‑1 (MQ=255) cAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGaaaa < 2:2992058/148‑1 (MQ=255) cAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGaaaa < 2:2900727/148‑1 (MQ=255) aaGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAAt > 1:1799115/1‑148 (MQ=255) aGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATa > 1:810149/1‑148 (MQ=255) aGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATa > 1:2589884/1‑148 (MQ=255) aaaTAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATaaa > 2:1900886/1‑148 (MQ=255) aaTAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAg > 1:2874688/1‑148 (MQ=255) tAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGaa > 2:1177904/1‑148 (MQ=255) aaaCCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTGATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGTCCTACACCATGAAAATAAAGAAc < 1:3494963/148‑1 (MQ=255) aaCCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACa > 2:2169761/1‑148 (MQ=255) ccAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACAtt < 2:1941598/148‑1 (MQ=255) aaTCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACt < 2:3151757/148‑1 (MQ=255) aTCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTc > 1:399578/1‑148 (MQ=255) aTCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTc > 2:3060373/1‑148 (MQ=255) tAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCAccc > 1:317571/1‑148 (MQ=255) aaTCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTATACCATGAAAATAAAGAACATTCTACTCACCCt > 1:3502866/1‑148 (MQ=255) aTCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCtt > 2:2579248/1‑148 (MQ=255) aTAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACTTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACATAAGGCCCTACACCATGAAAATAAAGAACATTCTAATCACCCTTTTCACCTc > 1:1287442/1‑148 (MQ=255) aaaaaTCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCAc > 1:2430775/1‑148 (MQ=255) aaaTCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTc < 2:2957867/148‑1 (MQ=255) aaTCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAATGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACATCACTcc > 2:618275/1‑148 (MQ=255) aaTCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTcc > 1:307170/1‑148 (MQ=255) tGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCt < 1:1476142/148‑1 (MQ=255) gTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCtt > 1:1383499/1‑148 (MQ=255) tAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTa > 1:1835914/1‑148 (MQ=255) aaTTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTAc > 1:1139888/1‑148 (MQ=255) aaTTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTAc > 1:1430290/1‑148 (MQ=255) ttGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCa < 2:1943582/148‑1 (MQ=255) tttCCCCTGTTTAGTTTCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGt < 2:749396/148‑1 (MQ=255) tttCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGt > 2:459150/1‑148 (MQ=255) tttCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGt < 2:1255853/148‑1 (MQ=255) tCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTtg > 2:1084021/1‑148 (MQ=255) tCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTtg < 1:1786006/148‑1 (MQ=255) ccTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTtgctg < 2:3548249/148‑1 (MQ=255) gTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGcac > 2:2756373/1‑148 (MQ=255) aGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGc < 2:478910/148‑1 (MQ=255) tGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCaa < 2:2548526/148‑1 (MQ=255) cTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaag > 2:1063598/1‑148 (MQ=255) tAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaaga < 1:1875655/148‑1 (MQ=255) tAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaaga < 1:267584/148‑1 (MQ=255) aaaaaTTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaagaa > 1:879511/1‑148 (MQ=255) aaaaaTTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaagaa > 1:2157914/1‑148 (MQ=255) aaaaTTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTTCAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaagaag < 1:1686920/148‑1 (MQ=255) aaaaTTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAaagaag < 2:3400477/148‑1 (MQ=255) aTTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCa > 1:2372413/1‑148 (MQ=255) tGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCaaa > 2:1434040/1‑148 (MQ=255) tACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAg < 2:2045401/148‑1 (MQ=255) gTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTa < 2:2195111/148‑1 (MQ=255) tttATCGCGGTGATTGTTACTTATAAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTAt > 1:2728101/1‑148 (MQ=255) ttATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATg > 1:998146/1‑148 (MQ=255) ttATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATg > 1:773781/1‑148 (MQ=255) ttATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATg < 2:2515678/148‑1 (MQ=255) tATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATgg > 1:1500254/1‑148 (MQ=255) cgcgGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGa < 1:2247728/148‑1 (MQ=255) cgcgGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGa > 2:2768/1‑148 (MQ=255) gTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTATACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtga > 2:2297909/1‑148 (MQ=255) gTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtga > 2:1814005/1‑148 (MQ=255) gTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtga < 1:1288839/148‑1 (MQ=255) tGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTATACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtgat > 2:1607731/1‑148 (MQ=255) tGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtgat < 2:1516237/148‑1 (MQ=255) tGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtgat > 2:1901329/1‑148 (MQ=255) aTTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtgatga > 2:1055413/1‑148 (MQ=255) aTTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATtgatga > 2:2369627/1‑148 (MQ=255) gTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTATACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGAtct < 1:3250460/148‑1 (MQ=255) aCTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCg < 1:2411567/148‑1 (MQ=255) ttattaAAACTGTCCTCTAACTACAGAATGCACTACAACATGAAAATAAAGAACATTCTACTCACCCTTTGCAACTCACTCCTGCTTACCAACGGTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTc < 1:2267522/148‑1 (MQ=255) ttattaAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTc > 1:1321102/1‑148 (MQ=255) ttattaAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTc > 1:3091345/1‑148 (MQ=255) ttattaAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTc > 1:2173520/1‑148 (MQ=255) tattaAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCt < 2:1693267/148‑1 (MQ=255) taAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGa < 1:2299516/148‑1 (MQ=255) taAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGa < 1:1283346/148‑1 (MQ=255) aCTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGc > 2:2056740/1‑148 (MQ=255) tGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTg < 2:2965196/148‑1 (MQ=255) ccTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCa < 2:2727751/148‑1 (MQ=255) ccTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCa > 2:2913580/1‑148 (MQ=255) ctctAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCaa > 1:924363/1‑148 (MQ=255) ctctAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACAAACGTTGATGCACACGCCAAAGAAGTCAAAATAGTTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCaa > 1:2877840/1‑148 (MQ=255) tctAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCaaa > 2:3127733/1‑148 (MQ=255) tACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATc > 1:1941657/1‑148 (MQ=255) tACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATc > 1:2093786/1‑148 (MQ=255) aCAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCg > 1:454319/1‑148 (MQ=255) aGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCgag < 2:2224825/148‑1 (MQ=255) gAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCgaga > 1:605731/1‑148 (MQ=255) gAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCgaga > 1:2460409/1‑148 (MQ=255) aGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAACGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGata < 2:3456173/148‑1 (MQ=255) aGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGata > 2:1426244/1‑148 (MQ=255) ggCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGatat > 2:1670346/1‑148 (MQ=255) gCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATc < 1:2537348/148‑1 (MQ=255) gCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATc > 2:2664448/1‑148 (MQ=255) cccTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCt > 1:1978258/1‑148 (MQ=255) tACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTtg < 2:1153151/148‑1 (MQ=255) tACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTtg < 2:1152944/148‑1 (MQ=255) tACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTtg > 2:360929/1‑148 (MQ=255) tACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTtg < 1:1920626/148‑1 (MQ=255) | GTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGATAAAAATCTGTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTCCTGCTTACCAACGTTGCTGCACACGCCAAAGAAGTCAAAATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATCTTTGTG > CP009273/3724341‑3724634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |