| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,779,316 | G→T | 10.5% | D233Y (GAT→TAT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,779,316 | 0 | G | T | 10.5% | 419.4 / 6.9 | 180 | D233Y (GAT→TAT) | gpmM | phosphoglycero mutase III, cofactor‑independent |
| Reads supporting (aligned to +/- strand): ref base G (92/61); new base T (3/24); total (95/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.60e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 190 total aligned reads displayed.
TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCT > CP009273/3779170‑3779463 | ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAAtgatga > 2:1041975/1‑148 (MQ=255) ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAAtgatga < 2:657944/148‑1 (MQ=255) tCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGGTTTCAGGCTGCTTATGCTCGCGACGAAAATGATGACTTc > 2:3285959/1‑148 (MQ=255) cGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCg > 2:1747963/1‑148 (MQ=255) tacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTTTGCTCGCGACGAAAATGATGAATTCGTGAAAg > 2:1203035/1‑148 (MQ=255) tacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAg > 2:821512/1‑148 (MQ=255) tacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAg > 2:2603363/1‑148 (MQ=255) acGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGc > 1:3021102/1‑148 (MQ=255) acGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGc < 1:3296589/148‑1 (MQ=255) cgcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCg < 2:3418168/148‑1 (MQ=255) gcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGa < 2:1793695/148‑1 (MQ=255) gcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGa > 1:1951599/1‑148 (MQ=255) gcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGa < 2:3106184/148‑1 (MQ=255) aTGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATTATGAATTAGTGAAATCGACCg > 1:1280209/1‑148 (MQ=255) tGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGt > 2:469646/1‑148 (MQ=255) tGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTAGGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGt < 2:3232381/148‑1 (MQ=255) taTAACCGTTGGGATCGCGTAGAAAAAGCTTAGGACCTGCTGACTCTGGCGCAGGGCGAGTTCCCGGCCGATACCGCGGTTGGTGGTTTGCAGGCTGCTTTTGCTCGCGACTAAAATTTTTATTTCGTGAAAGCGACCGTTATCCGTg < 2:313529/147‑1 (MQ=255) tacccGTGGGGACCGCGTAGACAACGCTTTGGCCGTGCTGACGCGGGCGCCGGGCGAGTGCCCGGCCGATACCGCCGTTGCTGGTTGCCAGGCTGCTTTGGCGCGCGCCGAAAATGATGAATTGGTGAAAGCGACCGTTATCCGTGCt < 2:2521341/145‑1 (MQ=255) aCCGTTGGTATCGCGTAGAAAAAGCTTAGGACCTGCTGACTCTGGCGCTGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGa < 2:2199546/148‑1 (MQ=255) ggtgggtaTCGCTTACAAAAAGCTTATCACCGGCTGACTCTGGCGCTGGGCGATTTCCAGGCCGATCCCGCCGTTGCTGGTTTGCCGGCTGATTATGCTCGCGACTAAAATGATGACTTCGTCAAAGCGACCGTTATCCGTGCTGAAg < 2:610678/141‑1 (MQ=255) cGTTGGGTTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCCGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATTAATTCGTTAAAGCGACCGTTATCCGTGCTGAAg < 2:2793560/148‑1 (MQ=255) gTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAgg > 2:1146331/1‑148 (MQ=255) ttGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGCGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGt < 2:785403/148‑1 (MQ=255) ttGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAATCGACCGTTATCCGTGCTGAAGGt > 2:61573/1‑148 (MQ=255) ttGGGATCGCGTAGAAAAAGCTTATGACCGGCTGACTCGGGCGCAGGGCGAGTGCCAGGCCGATCCCGCCGTTGCGGGTTTGCCGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAACGCGACCGTTATCCGTGCTGAAGGt < 2:2565810/148‑1 (MQ=255) tGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCCTTATACGTGCTGAAGGTc > 1:3126170/1‑148 (MQ=255) ggATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAg > 1:487790/1‑148 (MQ=255) gATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGc > 2:1170293/1‑148 (MQ=255) gATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGc > 1:2951929/1‑148 (MQ=255) aTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGcc > 2:3511502/1‑148 (MQ=255) tCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCa > 2:2360407/1‑148 (MQ=255) tCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCa > 2:508229/1‑148 (MQ=255) tCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCa > 2:509133/1‑148 (MQ=255) cgTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGGTATCCGTGCTGAAGGTCAGCCAGAc > 1:672401/1‑148 (MQ=255) ttataaaatGCTTATCACGGGCTGACTCGGGCGCTGGGCTTGTGCCCGGCCTATCCCGCGGTGGGTGTTTTGCTGGCTGCTTTTGCTCGCGACTAAATTTTTGATTTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcg < 1:1331216/144‑1 (MQ=255) aGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcgcg > 1:1940233/1‑148 (MQ=255) aGAAAAAGATTATGACCTGCTGACTGTGGCGCTGGGCGTGTGCCCGGCCGATACCGCGGTTGGTGTTTTGCAGGCTGATTATGCTCGCGACCAAATTGATTATTTCTTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcgcg < 1:1343207/148‑1 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCgg > 2:1299188/1‑148 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCgg < 2:3168891/148‑1 (MQ=255) aaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGGAGGCTGCTTATGCTCGCGACGAAAATTGTGAATTCGTGGAAGCGACCGGTATCCGTGGGGAAGGTCAGCCAGACGCGGcc > 1:1634653/1‑147 (MQ=255) aaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 1:2936483/1‑148 (MQ=255) aaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 1:2492039/1‑148 (MQ=255) aGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCACTg > 2:2958191/1‑148 (MQ=255) aGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATg > 1:737231/1‑148 (MQ=255) cTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGa > 1:899607/1‑148 (MQ=255) taggACCTGCTGACTCGGGCGCCGGGCGAGTTCCCGGCCTATACCGCGGTTGCTGGTTTGCAGGGTGATTATGCTCGCGACTAAATTGTTGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 1:219739/145‑1 (MQ=255) tATGACGTGCTGACTCGGGCGCTGGGCGTGTTCCCGGCCTATACCGCGGTTGCTGGTTTGCAGGGTGGTTATGCTCGCGACGAAATTTTTTAATTGTTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 1:1374421/148‑1 (MQ=255) tATGACCTGCGTACTCTGGCGCTGGGCGTGTTCCGGGCCTATCCCGCCGTTGGTGGTTTGCTGGCTGCTTATGCTCGCGACTAAATTGTTGAATTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 1:219710/148‑1 (MQ=255) aTGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa < 2:1951599/148‑1 (MQ=255) aTGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa > 2:3295035/1‑148 (MQ=255) gACCTGCTGACTGGGGCGCCGGGCGTGTTCCAGGCCGATACCGCCGTTGGTGGTTTGCAGGCTGCTTAGGCTCGCGACTAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACg < 2:1252141/148‑1 (MQ=255) gACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGTTTTGCAGGCTGCTTCTGCTCGCTACTAAAATTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACg < 2:3024062/148‑1 (MQ=255) ccgtgctgAGTCTGGCTCAGGGCGAGTTCCTGGCCGATACCGCCGTTGCTGGTTTGCTTGCTGCTTATGCACGCGTCTAAAATGATGAATTCGTGATAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACgg < 2:2578419/145‑1 (MQ=255) aCCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACgg > 2:2237515/1‑148 (MQ=255) ctgACTCGGGCGCTGGGGGTGTTCCCGCCCTATACCGCCTTGGGTGTTTTGCTGGCTGATTTTGCTCGCCACTAATTTTTTTATTTGGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATg < 1:359192/148‑1 (MQ=255) aCTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCCGCCAGACGCGGCCATGGAAGACGGCGATGCAc > 1:3041216/1‑148 (MQ=255) gggCGCTGGGCTTGTTCCCGCCCGATCCCGCGTTGGGGGGTTTGCGGGGTGCTTCTGCTCGCGACCAAAATGTTTATTTCTTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGAt < 1:1660971/147‑1 (MQ=255) cgcTGGGCGAGTCCCCGGCCGATCCCGCGGTTGGTGTTTTGCTGGCTGCTTTTGCGCGCGACCAAATTTATTATTTCGTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGAtttt < 1:1577533/148‑1 (MQ=255) tctgggCGAGTCCCTGCCCTTAACCGCGGTTGCTGTTTTGCTGTGTGATTTGGCTCGCTAGGAAATTGTTTAAGCCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTc < 1:2814234/145‑1 (MQ=255) cAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCa > 2:3398161/1‑148 (MQ=255) aGGGCGAGTTCCCGCCCTTTACCGCGGTTGGTGGTTTGCTGGGTGCTTTTGCTCGCGACTAAAATGTTGAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCAt < 1:2585525/148‑1 (MQ=255) aGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTTCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCCGACGCGGCAAAGGAAGACGGCGATGCACAGATTTTAAt > 1:1868762/1‑148 (MQ=255) ggCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCGTTTTCTCGCGACGAAAATGATGAATTAGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCCATGGAAGACGGCGATGGACTGATTTTCATGa > 1:977431/1‑148 (MQ=255) ggCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAAAGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCCGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGa > 1:3413113/1‑148 (MQ=255) cGAGTTCCAGGCCGATACCGCCGTTGGTGGTTTTGAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCCGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAAc > 1:3318614/1‑148 (MQ=255) gccgtgcccgcggTGGCTGGTTTGCGGGGTGATTATGCTCGCGACTAAATTTATGACTGGGTCACAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTg < 1:1003905/141‑1 (MQ=255) gCCGAGACCGCGGTTGGGGTTTTGCTGGCTGCTTTTGCGCGCGACGAATTTTATGATTTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTg < 1:1041975/148‑1 (MQ=255) gATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCGGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGAcc > 2:899047/1‑148 (MQ=255) ggTTGCTGGTTTGCCGGCTGCTTTTGCTCGCGACGAAAATGATGAATGGGTGAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGt < 1:821512/147‑1 (MQ=255) cgTTGCTGGTTTGCTGGCTGCTTATGCGCGCGACGAAAATGTTGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGt < 1:2603363/148‑1 (MQ=255) cgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGt > 2:2836934/1‑148 (MQ=255) gTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTg > 2:2765987/1‑148 (MQ=255) ggTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCa > 1:1471605/1‑148 (MQ=255) gTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCAc > 1:1443327/1‑148 (MQ=255) tttGCAGGCTGCTTATGCTCGGGACGAAATTGATGATTTGGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACt < 2:1234990/148‑1 (MQ=255) ttGCAGGCTGCTTATGCTCGCGACTAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTc < 2:1801437/148‑1 (MQ=255) cAGGCTGATTATGCTCGCGACTAAAATGTTTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTg < 1:225450/148‑1 (MQ=255) aGGCTGCTTATGCTCGCGACTAAATTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGc < 1:3169732/148‑1 (MQ=255) tgctTATGCTCGCGACTAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTc < 1:2052534/148‑1 (MQ=255) tgctTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTc < 1:1160886/148‑1 (MQ=255) tctTATGCTCGCTAATAAAATGATGAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCg < 1:3511502/147‑1 (MQ=255) ttATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTg > 1:411538/1‑148 (MQ=255) tATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGa < 1:176790/148‑1 (MQ=255) aTGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGaa > 1:1333050/1‑148 (MQ=255) gCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACg > 1:303384/1‑148 (MQ=255) tCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCt < 1:3308832/148‑1 (MQ=255) cgcgACTAAAATTATGAATGCGTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTg < 1:3285959/148‑1 (MQ=255) cgcgACGAAAATTATGAATTGGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTg < 1:1010428/148‑1 (MQ=255) cgacgaAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAt > 2:2572637/1‑148 (MQ=255) cgacgaAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAt < 2:885670/148‑1 (MQ=255) acgaAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAttt > 1:747493/1‑148 (MQ=255) aaaaTTATCAATTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGa < 1:390730/148‑1 (MQ=255) aaaaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGa > 2:1637447/1‑148 (MQ=255) aaaaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGa < 1:1167004/148‑1 (MQ=255) aaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg > 2:3126946/1‑148 (MQ=255) aaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg > 2:1356899/1‑148 (MQ=255) atgatgAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATgg > 2:2508340/1‑148 (MQ=255) atgatgAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATgg > 2:727638/1‑148 (MQ=255) tgatgaATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGc < 2:1776917/148‑1 (MQ=255) tgaagaATGCGTGAAAGCGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGc < 2:1102995/148‑1 (MQ=255) | TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCT > CP009273/3779170‑3779463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |