BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	3,822,339	A→C	14.3%	Q12P (CAA→CCA) ‡	xanP →	xanthine permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	3,822,339	0	A	C	14.3%	272.1 / 14.0	159	Q12P (CAA→CCA) ‡	xanP	xanthine permease
Reads supporting (aligned to +/- strand): ref base A (68/64); new base C (23/4); total (91/68)
Fisher's exact test for biased strand distribution p-value = 1.18e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 163 total aligned reads displayed.

TATAAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCG  >  CP009273/3822192‑3822484

tataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCa                                                                                                                                                   <  1:197745/148‑1 (MQ=255)

tataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCa                                                                                                                                                   >  1:2134965/1‑148 (MQ=255)

tataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCa                                                                                                                                                   <  1:3340613/148‑1 (MQ=255)

 ataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCaa                                                                                                                                                  <  1:857539/148‑1 (MQ=255)

   aaaaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAcc                                                                                                                                                <  1:2949198/148‑1 (MQ=255)

     aaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAcacg                                                                                                                                              >  2:3436520/1‑145 (MQ=255)

      aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGt                                                                                                                                             >  2:2878250/1‑148 (MQ=255)

      aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGt                                                                                                                                             <  2:3498203/148‑1 (MQ=255)

      aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGt                                                                                                                                             >  2:2082246/1‑148 (MQ=255)

      aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTCTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGt                                                                                                                                             <  1:1977990/148‑1 (MQ=255)

      aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCCTTTCTCTTTCGGTCAGCTAAAATGCCCGCTATGCTACCACGTGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGt                                                                                                                                             >  2:2082198/1‑148 (MQ=255)

        aGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGGTg                                                                                                                                           >  2:568588/1‑148 (MQ=255)

          tGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgcg                                                                                                                                         >  2:2468155/1‑148 (MQ=255)

          tGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgcg                                                                                                                                         >  2:166662/1‑148 (MQ=255)

           gCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCAACAACGGGATTGTTTTCGATGTCTTTTTCCACCCTCGAGTCAGAAAAAGCCCACCCCGATgcgc                                                                                                                                        >  1:2496190/1‑148 (MQ=255)

            cATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCCACCCGTTgcggc                                                                                                                                       >  1:928638/1‑146 (MQ=255)

            cATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCa                                                                                                                                       >  1:1196375/1‑148 (MQ=255)

               ttATCTAATTTAAATTTTTAGAGGTGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGTATTGTTTTCTTTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGAc                                                                                                                                    <  2:1370885/148‑1 (MQ=255)

                 aTCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGTATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAATTGCGCAACCGGTTTCGCAGACTc                                                                                                                                  >  2:1470840/1‑148 (MQ=255)

                 aTCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTc                                                                                                                                  >  2:449439/1‑148 (MQ=255)

                   ctctTTTAAATTTTTTGATGTGGTTGTGGCAATGGTTTGATTTTCTCTGTCGGTCAGATAAAATGCCCGCTTTGCTACCACGGGTTTGTTTTCGTTGTGTGTTTCCACCCTCGTGTCATAAAATGCGCAACCGGTTGCGCAGACTCaa                                                                                                                                <  1:2662628/148‑1 (MQ=255)

                     cATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCCTTGCGCAGACTCaaaa                                                                                                                              >  1:1062439/1‑148 (MQ=255)

                       tttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACa                                                                                                                            >  2:2161124/1‑148 (MQ=255)

                        ttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACac                                                                                                                           >  2:1456306/1‑147 (MQ=255)

                        ttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGAGCAACCCGTTGCGCCTACACAAAACAg                                                                                                                           >  1:1925401/1‑148 (MQ=255)

                           aaTATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACAGGTTGCGCAGAATCAAAAAAACGa                                                                                                                        >  1:2383294/1‑148 (MQ=255)

                            atatTTAGATGAGGATGTGGCAACCGTTTGCTTTTCTCTTTCGGTCAGCTAAAAGGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGGCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGaa                                                                                                                       <  2:771893/148‑1 (MQ=255)

                            atatTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCCACCCGTTTCGGAGAAACaaaaaacagaa                                                                                                                       >  1:1517343/1‑141 (MQ=255)

                                ttAGATGAGGATGTGGCAAACGTTTGGTTTTCTCTGTCGGTCAGCTAAAAGGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGa                                                                                                                   <  2:1064954/148‑1 (MQ=255)

                                ttAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAACTGa                                                                                                                   >  2:2636455/1‑148 (MQ=255)

                                  aGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGGTGCGCAGACTCAAAACAGCGCACTGAtt                                                                                                                 >  2:2697568/1‑148 (MQ=255)

                                   gATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACACCGAACAGAttt                                                                                                                >  1:2818973/1‑148 (MQ=255)

                                    aTGAGGATGTGGCAACCGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAACCAGCGAACTGATTTa                                                                                                               <  2:1719870/148‑1 (MQ=255)

                                       aGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGACTCAAAACAACGAACTGATTTAACg                                                                                                            >  1:650195/1‑148 (MQ=255)

                                        ggATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCTCGCGATTGTTTTCGATGTCTGCTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAAAAGAttttcagt                                                                                                           >  1:3490711/1‑143 (MQ=255)

                                        ggATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCACCCGGTTGCGCCCACGCAAAACAGCGAACTGAttttacgg                                                                                                           >  1:2151243/1‑143 (MQ=255)

                                          aTGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGGAACCGGTTGAGCCGACTCAAAAAAGCGAAATGAttttaagtct                                                                                                         >  1:433951/1‑141 (MQ=255)

                                                cAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGa                                                                                                   >  2:3214073/1‑148 (MQ=255)

                                                  aaCGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGAATCAAAACAGCGAACTGATTTACCGTCTTGAatata                                                                                                 >  2:1504738/1‑147 (MQ=255)

                                                   acgaatGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCATTTCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCACGAGTCAGAAAATGCGCAACCCGTAGCGCAGACTCAAAAAAGCGAACTGAATTAACGTCTTTAACATcc                                                                                                >  2:2477714/6‑147 (MQ=255)

                                                    cGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGATACCACGGGATTTTTTTCGTTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGt                                                                                               <  2:3508722/148‑1 (MQ=255)

                                                        tGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTccgc                                                                                           >  2:2236979/1‑148 (MQ=255)

                                                          cTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGGTGCGCAGACACAAAACAGCGAACTGATTTACCGTCTTGAAGATAGTccgccc                                                                                         >  1:586604/1‑147 (MQ=255)

                                                          cTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAATATCGTccgccg                                                                                         >  2:3172419/1‑148 (MQ=255)

                                                          attttCTCTTTCGGTCAGCTAAAAGGCCGGCTTTGCTCCCCGGGGTTTGTTTTCTTTGTCTGTTACCACCCTCGAGTAAGAAAATGCGCACCCGGTTGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTccgccg                                                                                         <  1:2052980/147‑1 (MQ=255)

                                                             tgctctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCtt                                                                                      <  2:125328/146‑1 (MQ=255)

                                                              tctcTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCCACCCGGTGCGCAGAATCACAAAAACCCACATATTTAACGTCTTTAAGATCGTCCGCCGCGTc                                                                                     >  1:1552692/1‑148 (MQ=255)

                                                              tctcTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGGTGCGCAGACTCAAAAAAGCGAACTGATTTAACGTCTTGAAGATCGTCCGCCGCGTc                                                                                     >  1:1142297/1‑148 (MQ=255)

                                                                 ctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCCCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTc                                                                                  >  2:2050015/1‑148 (MQ=255)

                                                                      ggTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAAcc                                                                             <  2:866471/148‑1 (MQ=255)

                                                                       gTCAGCTAAAAGCCCCGCTTGGCTACCTCGGGTTTGTTTTCGTTGTCTTTTTCCACCCTCGAGTCACAAAATGCGCACCGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAAccc                                                                            <  1:3040234/148‑1 (MQ=255)

                                                                       gTCAGATAAAAGGCCCGTTTTGCAACCAGGGTTTTTTTTTCGTTGTGTGTTTCCACCCGCGAGACATAAATGGCGCAACGGGTTGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAAccc                                                                            <  1:1777093/148‑1 (MQ=255)

                                                                        tCAGCAAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTGTCCACCCTCGCGTCAGAAAATGCGCAACGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCt                                                                           <  1:3246217/148‑1 (MQ=255)

                                                                         cAGCTAAAATGCCCGCTTTGCTACCACGGGATTTTTTTCGATGTCTGTTTCCACCCTCGAGGCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTg                                                                          <  2:247714/148‑1 (MQ=255)

                                                                         cAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTg                                                                          >  2:2284873/1‑148 (MQ=255)

                                                                           gCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGtt                                                                        >  2:965645/1‑148 (MQ=255)

                                                                            cTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACTCAAAAAAGCGCACAGATTTAACGTCTTGAAGATCGGCCGCCGCGGCCACAAACCCAGttt                                                                       >  1:78745/1‑148 (MQ=255)

                                                                              aatcggCCCGATTTGATCCCCGGGGATTGTTTGGGTTGTGTGTTGCCACCCTCGAGTCACAAACTGCGCCCGGGGTGGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTgc                                                                     <  1:1318887/143‑1 (MQ=255)

                                                                               aaaTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGCACTGATTTAACGTCTTGAAGAACGTCCGCCGCTTCCTCAAACCCTGTTTgcc                                                                    >  2:5033/1‑148 (MQ=255)

                                                                                 aTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGGCTTGAAGATCGTCCGCCGCTTCCTCAAACCCAGTTTgccgc                                                                  >  1:2027737/1‑148 (MQ=255)

                                                                                 aTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGGTGCGCAGACTCAAAACACCGAACTGATTTACCGTCTTGAATATCCTCCGCCGCGGCCACAAACCCGGttttgcgc                                                                  >  1:96772/1‑143 (MQ=255)

                                                                                  tGCCCGCTTTGCTACCACGGGTTTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAAGGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTgccgcc                                                                 <  2:1861709/148‑1 (MQ=255)

                                                                                   gCCCGTTTTGCTACCCGGGTTTTGTTTTCGATGTTGGTTACCACCCTGTCTTCAGAAATGGCGAAACGGGTGGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCt                                                                <  1:3051343/148‑1 (MQ=255)

                                                                                    ccgtcTTTGCTACCAGGGTTTTTTTTTCGTTGTCTGTAACCCCCCCCGACTCATAACCGCCGCACCGGGTCCCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTg                                                               <  1:347792/144‑1 (MQ=255)

                                                                                    cccGCTTTGCTCCCAGGTGTTTGTTTTCGTTGTCTTTTTCCACCCTCGCGTCACAAATGGCGAACGGGGGTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTg                                                               <  1:128658/148‑1 (MQ=255)

                                                                                     ccGCTTTTCTACCAGGGGATTTTTTTCGATGTCTGTTTCCACCCTCTAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGt                                                              <  2:2383294/148‑1 (MQ=255)

                                                                                       gCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACACAAAAAAACCAACAGATTTAACGTCTTTAAGATAGTCCCCCGCTTCCTCAAACCCAGTTTGCCGCCAGTCa                                                            >  1:171244/1‑148 (MQ=255)

                                                                                           tGCTACCACGGGATTGTTTTCGCTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCAt                                                        <  2:3029688/148‑1 (MQ=255)

                                                                                            gCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAAAACCGAACTGATTTACCGTCTTGTAGATAGTCCGCCGCGTCCACAAACCCAGTTTGCCGCCAGTCAGCaac                                                       >  1:2857759/1‑146 (MQ=255)

                                                                                                ccACGGGTTTGTTTGCGATGTCTGTTTCCACCCTCGAGTCATAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATctgct                                                   <  2:3276229/148‑1 (MQ=255)

                                                                                                   cGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAAAAGCGAACAGATTTAACGTCTTGAAGATAGTCCCCCGCTTCCTCAAACCCTGTTTGCCGCCGGTCAGCATCAGCGGGc                                                >  1:1114758/1‑148 (MQ=255)

                                                                                                      gtttGTTTGCGTGGTGTGTTGCCCCCCTCGAGTCACAAACGGCGCCCCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGAt                                             <  1:2161124/146‑1 (MQ=255)

                                                                                                        ttGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGGTGCGCAGACTCAAAACAGCGAACTGATTTACCGGCTTGAAGATCGTCCGCCGCGTCCTCAAAACCGGTTTGCCGCCGGGCAGCATCTGCTGGGGATGt                                           >  1:149653/1‑148 (MQ=255)

                                                                                                        ttGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGt                                           <  1:2312058/148‑1 (MQ=255)

                                                                                                         tGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCGGTTTGCCGCCTGTCCGCATCTGCTGGCGATGtt                                          >  2:1576349/1‑148 (MQ=255)

                                                                                                           ttttCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGGTGCGCAGACTCAAAAAAGCGAACAGATTTAACCTCTTGTAGATCGTCCGCCGCGTCCTCAAACCCTGTTTTGCGCCGGTCAGCATATGCTGGCGCTGttgg                                        >  1:700633/1‑146 (MQ=255)

                                                                                                            tttCGTTGTCTGTTTCCACCCTCGAGTCATAAACTGCGCACCGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGt                                       <  1:2054129/148‑1 (MQ=255)

                                                                                                             ttCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGtt                                      >  2:1430959/1‑148 (MQ=255)

                                                                                                              tCGATGTGTTTTCCCCCCCTCGAGACACAAAAGGCGCACCCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTg                                     <  1:123237/148‑1 (MQ=255)

                                                                                                               cGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTAAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGc                                    >  2:72222/1‑148 (MQ=255)

                                                                                                                gATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCg                                   <  2:1438837/148‑1 (MQ=255)

                                                                                                                     cTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGAt                              >  2:1628593/1‑148 (MQ=255)

                                                                                                                         ttCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACg                          <  2:729968/148‑1 (MQ=255)

                                                                                                                              cccTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGGGATCACGCCAgc                     >  2:1189260/1‑148 (MQ=255)

                                                                                                                               ccTCGAGACACAAACGGCGCAACGGGGTGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAgcg                    <  1:186252/148‑1 (MQ=255)

                                                                                                                                cTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAACTGATTTAACGTCTTGTATATAGTCCGCCGCGTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTAGTTGCGGTGATAACGCCCgcgc                   >  1:1439330/1‑148 (MQ=255)

                                                                                                                                 tCGAGTCACAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATGTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCCGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCt                  <  2:3172474/148‑1 (MQ=255)

                                                                                                                                  cGAGTCTGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTa                 <  2:2937269/148‑1 (MQ=255)

                                                                                                                                  cGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTa                 >  2:2485517/1‑148 (MQ=255)

                                                                                                                                  cGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTa                 <  2:2937204/148‑1 (MQ=255)

                                                                                                                                   gAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAAAAGCGAACAGATTTACCGTCTTGAAGAACGTCCGCCGCTTCCTCAAAACCAGTTTTCCGCCTGTCAGCATATGCTGGCGATGTTAGTTTCGGTGATAACGCCAGCGCTAt                >  1:1720581/1‑148 (MQ=255)

                                                                                                                                      tCAGAATCTGCGCACCCGGTGGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTaa             <  1:166672/148‑1 (MQ=255)

                                                                                                                                       cAGAAAATGCGCACCCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAAt            <  1:760162/148‑1 (MQ=255)

                                                                                                                                        ataaaaGGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTGACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATc           <  2:2420653/146‑1 (MQ=255)

                                                                                                                                          aaatggcgcACCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTg         <  1:2228912/143‑1 (MQ=255)

                                                                                                                                          aaagTGCGCCACGGTTCGCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTg         <  1:1034429/148‑1 (MQ=255)

                                                                                                                                            aaTGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGcc       >  1:2524086/1‑148 (MQ=255)

                                                                                                                                                 gcAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGgcg  <  2:1587752/148‑1 (MQ=255)

                                                                                                                                                 gcAACCGGTAGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGgcg  <  2:903364/148‑1 (MQ=255)

                                                                                                                                                 gcAACCGGGTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGgcg  <  2:1586370/148‑1 (MQ=255)

TATAAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCG  >  CP009273/3822192‑3822484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`