| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,860,159 | 0 | C | A | 98.8% | 519.4 / ‑5.3 | 185 | P33P (CCG→CCT) | ibpB | heat shock chaperone |
| Reads supporting (aligned to +/- strand): ref base C (2/0); major base A (68/112); minor base G (3/0); total (73/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.69e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 188 total aligned reads displayed.
TTTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAA > CP009273/3860014‑3860303 | ttttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTAACTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTAcggagg < 2:3451242/148‑1 (MQ=255) tttCTCTTCTTTTGGCGGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAggg < 1:1292187/148‑1 (MQ=255) tctcTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAAGGTTGTACGGAGGGaa > 2:1247568/1‑148 (MQ=255) ttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGctc < 2:1533389/148‑1 (MQ=255) ttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAAAGTTTTTAGGAGGGAACcta > 1:548711/1‑147 (MQ=255) tcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGctct < 1:2626419/148‑1 (MQ=255) tcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTAAGGAGGGAAGctct > 1:1747693/1‑148 (MQ=255) cttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑CAATGTTTTAAGGAGGGGAGCTCTg > 1:2597477/1‑148 (MQ=255) tttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGc < 2:668470/148‑1 (MQ=255) gtGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCt < 1:1837745/147‑1 (MQ=255) gctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑AAAATTTTTAAGGAGGGAAGCGCTGGCttta > 1:201025/1‑147 (MQ=255) ctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCa < 2:982500/148‑1 (MQ=255) ctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGGGGGAAGCGCAGGCTTTAACCg > 2:2706170/1‑148 (MQ=255) ccGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGCGGGGAGCTCAGGCTTTCACCAG‑c > 2:1864177/1‑148 (MQ=255) ccGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGGTTTCACCGG‑c > 2:1067854/1‑148 (MQ=255) ccGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTAAGGAGGGAAGCTCTGGCTTTGACCGG‑c > 2:2484967/1‑148 (MQ=255) cGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CCATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑Cg > 2:2086972/1‑148 (MQ=255) cGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑Cg < 2:3201839/148‑1 (MQ=255) cGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑Cg < 2:169309/148‑1 (MQ=255) ggCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGt < 1:872640/148‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGT‑GAATGTTTTACGGAGGGAAGCTCTGGGGTTAACCGG‑Cggt > 1:156900/1‑146 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGtt < 2:1674655/148‑1 (MQ=255) cGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGttt < 1:587705/148‑1 (MQ=255) gCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTTCGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGc > 2:3553654/1‑148 (MQ=255) gCCTTTGACGCTCAGGCGCGTACCTGCCAGTTGACTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGc < 1:3016528/148‑1 (MQ=255) ccTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCa < 2:2028481/148‑1 (MQ=255) ccTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCa < 2:295603/148‑1 (MQ=255) cTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAg < 2:3421804/148‑1 (MQ=255) ttttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGt < 1:1713088/148‑1 (MQ=255) tttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTGTCTACAATTTTG‑ACCGATGGTACCACTGGCTTTAACCGGCCGTTTTgtggt > 1:410838/1‑144 (MQ=255) aCGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTTTAAGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCgg > 1:3219021/1‑147 (MQ=255) cGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTAACCGG‑CGGTTTGCAGT‑GCGtt > 2:153431/1‑148 (MQ=255) gCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTg < 2:161803/148‑1 (MQ=255) gCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTg < 2:3035490/148‑1 (MQ=255) cTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCCGT‑GCGTTgt > 2:2024699/1‑147 (MQ=255) cAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGGTGGcc > 2:1921865/1‑148 (MQ=255) cgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTg < 1:2894809/148‑1 (MQ=255) tACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTc > 2:2850093/1‑148 (MQ=255) ttCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCaaaa < 1:2883366/148‑1 (MQ=255) ttCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCaaaa < 1:2883103/148‑1 (MQ=255) ttCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑CAATTTTTTACGGAGGGAACCTCTGGCTTTCACCGG‑CGGTTTTGAGTGGGGTTGGCC‑GTTTGTGaaaa > 1:2238668/1‑148 (MQ=255) tCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAAc < 1:3496321/148‑1 (MQ=255) tCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAAc > 2:873419/1‑148 (MQ=255) aGTTGAATCTCGAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGa < 2:2222937/148‑1 (MQ=255) gTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGAt < 1:405554/148‑1 (MQ=255) tGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATcc < 1:3475509/148‑1 (MQ=255) aaTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTTCGGAGGGAAGCTCTGGCTTTAAACGG‑CGTTTTGCAGT‑GCGGTGGGCAGTTTGTCAAAAACGCTACAt > 2:1077171/1‑148 (MQ=255) tctcTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCCGT‑GCGTTGGCCCGTTTGTGAAAACCGATCCATTg > 2:2605309/1‑148 (MQ=255) ctctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGa < 2:3157824/148‑1 (MQ=255) tctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGGTTGTCAAAACCGATACATTgtc > 2:1964750/1‑146 (MQ=255) ctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACg < 2:734225/148‑1 (MQ=255) tAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGc < 2:1211344/148‑1 (MQ=255) tAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGc < 2:2999881/148‑1 (MQ=255) tAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGc < 1:2846926/148‑1 (MQ=255) aaTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCAt < 1:70125/148‑1 (MQ=255) aaTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCAt < 1:1978714/148‑1 (MQ=255) aaTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCAt < 2:293613/148‑1 (MQ=255) tCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTg < 2:2546045/148‑1 (MQ=255) ccTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTgg < 2:1668895/148‑1 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTgggg < 1:427727/148‑1 (MQ=255) gACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGa < 1:3339916/148‑1 (MQ=255) gACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGGACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGa < 2:1626531/148‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 1:497813/148‑1 (MQ=255) cGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTAAGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GGGTTGGGCAGTTTGTCAAAAACGAACCATTGACGCCTCAGGGGGGGTa > 1:2055339/1‑148 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaaa < 1:217069/148‑1 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaaa < 2:469439/148‑1 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCAGGCTTTCAACGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAAACGATCCATTGACGCATCAGGGGGGATaaa > 2:549439/1‑148 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑CAATGTTGTAAGGAGGGAAGCGCATGCTTTCACCCG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTAAAAACCCATACATTGACGCCACAGTGGGGCTaaa > 2:389953/1‑148 (MQ=255) gAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTGTTAT‑CAATGTTTGACGGAGGGAAGCTCTGGCTTTCACCGG‑CGGGTTGCAGT‑GCGGTGGCCACTGTGTCAAAACCGATAAAATGCCGCATCAGTGGGGATaaa > 2:549559/1‑148 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAAt < 1:1961107/148‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑GAATTTTGTAAGGCGGGAAGCTCTGGGTTTGAACGG‑CGGTTTTGATT‑GGGGTGGCCCGGTTGTGAAAAAACCTCCCAATACGCAACAGTGGGGGTaaaa > 1:2555810/1‑147 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 2:3222198/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 1:2015860/148‑1 (MQ=255) tGCCAGCGCAAGGGTACTGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAg < 2:2119287/148‑1 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 2:2740062/148‑1 (MQ=255) ccAGCGAAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 2:2740309/148‑1 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGc < 2:1389355/148‑1 (MQ=255) aGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGGCACTTTGTCAAAAACCATCCAATGACGCATCAGTGGGGCTAAATAGAAGTTAAGCATAg > 2:1984502/1‑148 (MQ=255) ggTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTc < 1:1889720/148‑1 (MQ=255) gTAATGCGGTAGTGGTTATCGTCGCTTTTGT‑AAAAGTTGTACGGGGGGGACCTCTGGGTTTCAACCG‑CGTTTTGGAGT‑GCGTTTGCCCGGTTGTCAAAAACGATACAATTACGCATAACTGGGGGTAAAACGAAGTTACGccaagtaa > 2:2391160/1‑141 (MQ=255) gTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCa < 1:3116370/148‑1 (MQ=255) gTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCGTTCACCCG‑CGGTTTTCAGT‑GCGTTGGCCACGTTGTCAAAACCGATACATTGACGCATCAGTTGGGATAAAACGAAGTTTAGCATattaa > 2:1157462/1‑144 (MQ=255) gTAATGCGGTAGTGGTTATCGTCGCTTTTAT‑CAATTTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCCGT‑GCGTTGGCCAGTTTGTAAAAACCGATCCATTGACGCATCAGTGGGGCTAAATCCTAGTTACGCATAGtaa > 2:1402027/1‑146 (MQ=255) ggTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTcc < 1:863116/148‑1 (MQ=255) gTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCt < 2:79544/148‑1 (MQ=255) tGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTa < 1:3424418/148‑1 (MQ=255) ggTTATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaa < 2:1123885/148‑1 (MQ=255) ttATCGTCGCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaaga < 1:2480190/148‑1 (MQ=255) cgtcgCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCg < 1:1077171/148‑1 (MQ=255) gtcgCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 2:154910/148‑1 (MQ=255) cgCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagt > 2:339628/1‑148 (MQ=255) gCTTTTCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagta > 2:3383645/1‑148 (MQ=255) ttttCT‑CAATGTTGTACGGATGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaag < 1:1067372/148‑1 (MQ=255) ttttCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaag > 2:2417253/1‑148 (MQ=255) tttCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaagt < 1:2862808/148‑1 (MQ=255) ttCT‑CAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGTCGCATCAGTGGGGATAAATCGTAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaagta > 1:736295/1‑148 (MQ=255) t‑cAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAAACGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTAAGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCt > 1:3316061/1‑148 (MQ=255) tgttgtACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaa < 2:477208/148‑1 (MQ=255) gttgtACGGAGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaaa > 1:1105509/1‑148 (MQ=255) cggaggGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGaa < 2:1419734/148‑1 (MQ=255) | TTTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCT‑CAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGG‑CGTTTTGCAGT‑GCGTTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAA > CP009273/3860014‑3860303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |