| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,901,859 | C→A | 57.2% | intergenic (‑133/+50) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,901,859 | 0 | C | A | 57.2% | 7.6 / 286.4 | 199 | intergenic (‑133/+50) | pstB/pstA | phosphate transporter subunit/phosphate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (44/41); new base A (65/48); total (109/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.58e-01 | |||||||||||
Only 100 of 200 total aligned reads displayed.
TTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGC > CP009273/3901712‑3902005 | aCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGccc > 1:2196285/1‑148 (MQ=255) aCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGccc < 1:3182435/148‑1 (MQ=255) aTACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCctc > 2:3536346/1‑148 (MQ=255) tACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCctct < 2:378588/148‑1 (MQ=255) tACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCctct > 1:2877584/1‑148 (MQ=255) aCTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTg < 2:2736633/148‑1 (MQ=255) tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTggg > 2:2779437/1‑148 (MQ=255) aTTGCAATCTGTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGga < 2:1844186/148‑1 (MQ=255) ttGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGgag < 1:616996/148‑1 (MQ=255) ttGCAATCTATTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTAACCGAAGGCCGCATCAGGCGTTCACGCCGCATCCGGCAAACTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCACTGGGgag > 2:1655940/1‑148 (MQ=255) tGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTATCCCCACTGGGgaga > 1:2095584/1‑148 (MQ=255) gCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGTCCGGATCAGGAGTTCAAGCCGCATCCGGCAAAGTGTTAA‑CAGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCACCTCGACCCTCTGGGGagag < 2:162991/148‑1 (MQ=255) gCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGagag < 2:577882/148‑1 (MQ=255) aaTCTTGTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAggg < 2:266535/148‑1 (MQ=255) tcctgtCCGCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt < 2:3365907/143‑1 (MQ=255) tCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt < 2:1604848/148‑1 (MQ=255) tCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt > 1:1519964/1‑148 (MQ=255) tttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCACATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGTGTGGGTTTgg > 2:3246753/1‑148 (MQ=255) ttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAggg < 1:1627561/148‑1 (MQ=255) tCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGGACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAg < 1:943624/148‑1 (MQ=255) cctCGTGCCTGATGCACTTCGCTAATCAGGCTTACAGTAGGCCGGATAAGTCGTTCACGCCTCATCCTTCAAAGTTTTAA‑CCGAGTACAGAGTCAAAAAGGAGCTCGGTCGGTACCCTTGCCCCTCTGTGGAGAGGTTTAGGGTGAgg < 2:2375017/146‑1 (MQ=255) cATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAgg < 1:2796817/148‑1 (MQ=255) aTCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACCGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAggg > 2:1332377/1‑148 (MQ=255) tCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAgggg < 1:1198511/148‑1 (MQ=255) cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGTATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGa < 2:1904442/148‑1 (MQ=255) cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGa > 1:298339/1‑148 (MQ=255) tGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGaaa < 2:2098768/148‑1 (MQ=255) gCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGaaaa < 1:3445754/148‑1 (MQ=255) gCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGaaaa < 1:3445110/148‑1 (MQ=255) cTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAcc > 1:1234327/1‑148 (MQ=255) tGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCg > 1:134857/1‑148 (MQ=255) cTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGc > 1:2471613/1‑148 (MQ=255) ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACATAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCa < 2:3136574/148‑1 (MQ=255) ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGCGGGGTAGGGTGAGGGGAAAACCGTGTCAGCa > 2:415365/1‑148 (MQ=255) ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCa > 1:2813414/1‑148 (MQ=255) ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCCGTCCCCAAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCa > 1:1283387/1‑148 (MQ=255) aaTCTGGCTTACCGTCGGCGGGATCTGGCTTACACGCCGCCTCCGCAAATGTTTTAA‑CCGTGAACAGAGACAAAATGGCGCTGGGTCGGCCCCCTCGCCCCTGTGGGTAGTGGGTTCGGGGGCGGGGAAAACCGTGTCAGCAATATCa < 2:783185/148‑1 (MQ=255) tCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 1:2407571/1‑148 (MQ=255) tCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAc > 2:851253/1‑148 (MQ=255) cAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAAcc > 2:1365364/1‑148 (MQ=255) ggCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCgt > 1:315477/1‑148 (MQ=255) gattACCGTCGGCCGTATCTGGCGTTCACGCCGCATCCGGCAAATTGTTAA‑CCGTGTACAGAGACAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGTGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCgtg < 2:3546855/146‑1 (MQ=38) cTTACCGTCGGCCGTATCAGGCGTTCACGCCGCACCCGGCAATGTGTTAA‑CCGTGTACAGAGTCAAAATGGCGCTCGGTCGGTCCCCTCGCCCCTCGGGGGTGTGGGTTTGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCgtgt < 2:1428722/148‑1 (MQ=255) tACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGttt > 2:1547581/1‑148 (MQ=255) aCCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTa < 2:1796380/148‑1 (MQ=255) aCCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTa < 1:1013680/148‑1 (MQ=255) tAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCCAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGGTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttct > 1:1220205/1‑148 (MQ=255) aGGCCGGAACAGGCTGACACGCCGCAGCGGGAAAAGTGTTAA‑CCTTGTACAGCTAAAAAACGGCGCTCGGGGGGACCCCTCGCCCCTCTGGGGTTTGGTTTAGGTTTAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttctt < 2:379740/148‑1 (MQ=255) ggCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttcttc > 1:983294/1‑148 (MQ=255) ggCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTAttcttc > 1:983356/1‑148 (MQ=255) ccGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGGGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGc > 2:2177724/1‑148 (MQ=255) ggATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCaa > 2:3152258/1‑148 (MQ=255) tCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCaaaaa < 1:3134252/148‑1 (MQ=255) cAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaac > 2:3101782/1‑148 (MQ=255) ggCGTCCCCGCCGCA‑CCCGCAAATTTTTAACCCGTGACCAGACAAAAAACGGCGCGGGGTGGGCCCCCGCGCCCCTGGGGGTAGTGGTTTTGGGTGCGGGCAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaacaa < 1:1722961/148‑1 (MQ=255) ggCGTCCCCGCCCCAGCCGGCATTGTGTAAC‑CGGTGAACAGAGTCAAAACGGGGCGGGGTGGGGCCCCGCCCCCGTGGGGGGTGGGGTTTGGGGTGGGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAaacaa < 1:3482520/148‑1 (MQ=255) aCGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACgcgcgc > 1:1147293/1‑148 (MQ=255) cgcATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGa < 2:3023590/148‑1 (MQ=255) aTCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATg < 1:1547581/148‑1 (MQ=255) tCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGt < 2:665664/148‑1 (MQ=255) tgtgtTAA‑CCGTGAACAGAGACAAAAAGGCGCGCGGTCGGGCCCCTCGCCCATCTGGGTAGAGGGTTTGGGTGCGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagc < 2:2196285/147‑1 (MQ=255) aGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagc > 1:3280887/1‑148 (MQ=255) gtgtTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagca > 2:795739/1‑148 (MQ=255) tgtTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagcag > 1:875168/1‑148 (MQ=255) tgtTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTcagcagcag > 1:2406477/1‑148 (MQ=255) gtTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGt < 2:524165/148‑1 (MQ=255) ttAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTa < 1:1022581/148‑1 (MQ=255) ccGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGca > 1:690211/1‑148 (MQ=255) cGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGcac < 1:1045041/148‑1 (MQ=255) cGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGcac > 2:725815/1‑148 (MQ=255) tgtACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAg > 2:1203038/1‑148 (MQ=255) tACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAggg < 1:2692475/148‑1 (MQ=255) tACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAggg < 1:2672675/148‑1 (MQ=255) aCAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGt > 2:1163315/1‑148 (MQ=255) aCAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGt > 1:75396/1‑148 (MQ=255) aCAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGt > 2:1821140/1‑148 (MQ=255) aCAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACAGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGt < 1:792744/148‑1 (MQ=255) ctgcgTCAAAACGGCGCTCGGCCGGCCCCCGCGCCCCACTGGGGTGTGGGTTTGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTa < 2:1243930/144‑1 (MQ=255) agTCAACAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATg < 2:1916763/148‑1 (MQ=255) agTCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATg < 2:2170184/148‑1 (MQ=255) tCAAAAAGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGAt > 1:530590/1‑148 (MQ=255) cAAAACGGCGCTGGGGCGGTCCCCTCGCCCCTCTGGGTTGTGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATc < 2:3179463/148‑1 (MQ=39) cAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTACTGATc > 2:1052183/1‑148 (MQ=255) aaaaaGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCa < 2:930126/148‑1 (MQ=255) aaacGGCGCGCGGTGGGTCCCCTCGCCCCTGTGGGGAGTGGGTTTGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCaa < 2:2647669/148‑1 (MQ=255) aaaGGCGCTCGGTCGGTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAAt < 2:2813414/148‑1 (MQ=255) tcggtcggTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGc > 1:2353848/1‑148 (MQ=255) tcggtcggTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGc > 1:3173465/1‑148 (MQ=255) tcggtcggTCCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGc < 1:1332377/148‑1 (MQ=255) gtcCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTACTGATCAATACCCCGGCCCAGGcc > 2:2919110/1‑148 (MQ=255) gtcCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGcc > 2:1649432/1‑148 (MQ=255) tcCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCa < 2:2355144/148‑1 (MQ=255) tcCCCTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCa > 2:3086169/1‑148 (MQ=255) ccccTCGCCCCTCTGGGGAGCGGGTGGGGGGGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCaa < 2:2041630/148‑1 (MQ=255) cccTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAAt > 2:1963418/1‑148 (MQ=255) ccTAGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAAtt > 1:2205947/1‑148 (MQ=255) cTCGCCCCTGTGGGGTGTGGTTTCGGGTGTGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtg < 2:307344/148‑1 (MQ=255) tCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtgc > 1:68517/1‑148 (MQ=255) tCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtgc > 1:36765/1‑148 (MQ=255) tCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATtgc > 1:2515202/1‑148 (MQ=255) | TTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAA‑CCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGC > CP009273/3901712‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |