| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,053,774 | G→T | 10.9% | intergenic (+184/‑33) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,053,774 | 0 | G | T | 10.9% | 754.2 / 44.4 | 226 | intergenic (+184/‑33) | typA/yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (111/90); new base T (13/12); total (124/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
Only 100 of 227 total aligned reads displayed.
CAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAAC > CP009273/4053628‑4053921 | cAGGATTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGc < 2:2901675/148‑1 (MQ=255) tttttttttGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACTCCGGTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCa > 2:1412135/1‑148 (MQ=255) tttttttttGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCa < 2:2832258/148‑1 (MQ=255) ttttttGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCt < 2:655634/148‑1 (MQ=255) ttttttGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCt < 2:210667/148‑1 (MQ=255) gCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTa > 2:783903/1‑148 (MQ=255) ccTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTaa > 1:566656/1‑148 (MQ=255) ccTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTaa < 1:2414730/148‑1 (MQ=255) ccTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTaa < 1:1786682/148‑1 (MQ=255) tGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAAc > 2:462646/1‑148 (MQ=255) tGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAAc > 2:2251626/1‑148 (MQ=255) gAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATTCTTCATCTGGTTTAAACCAAAAg > 1:2328535/1‑148 (MQ=255) gcACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTAAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGAtt < 1:3123367/148‑1 (MQ=255) acacCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTaa < 1:2851693/148‑1 (MQ=255) cacCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTaaa > 1:279793/1‑148 (MQ=255) aattGCGAGTTTCTACATTATAAGTATGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCAGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGTTGCGTCATGTTGTTTATACCTAAAGGATTAAACaa < 1:1129326/145‑1 (MQ=255) aaTGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTATGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGCTTTAAACCAAAAGGATTAAACAAt > 2:1610499/1‑148 (MQ=255) aTGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACAAAAAGGATTAAACAATg > 2:2460123/1‑148 (MQ=255) gCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGc > 2:3343529/1‑148 (MQ=255) aGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGga < 2:3465221/148‑1 (MQ=255) gTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGgag > 1:1126354/1‑148 (MQ=255) gTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGgag > 2:2737976/1‑148 (MQ=255) tATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGgaga < 1:262779/148‑1 (MQ=255) tcacTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGaatca < 1:1965349/145‑1 (MQ=255) tcCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGaatca > 1:3344539/1‑148 (MQ=255) cTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGaatcaatc < 1:73488/148‑1 (MQ=255) ttATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATcc > 1:2368916/1‑148 (MQ=255) tataAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATTCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCa > 2:1775540/1‑148 (MQ=255) aGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGt > 1:804314/1‑148 (MQ=255) gTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTa > 2:1374074/1‑148 (MQ=255) tgGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGaaaa < 1:753391/148‑1 (MQ=255) gTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATg > 1:2777534/1‑148 (MQ=255) ttACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGc < 1:442412/148‑1 (MQ=255) ttACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGc < 2:3042171/148‑1 (MQ=255) tACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATTCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCa > 1:1320276/1‑148 (MQ=255) tACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCa > 2:3206616/1‑148 (MQ=255) aCGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCaa < 1:3454625/148‑1 (MQ=255) aaTAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAagag > 1:1877/1‑148 (MQ=255) aTAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAgaga < 1:2217885/148‑1 (MQ=255) aTAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAgaga > 1:1562190/1‑148 (MQ=255) tAGAGAGATTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGaa < 1:3552977/148‑1 (MQ=255) agagagCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGaaa > 2:3338161/1‑148 (MQ=255) agagagCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGaaa < 1:2605961/148‑1 (MQ=255) agagCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACt > 2:2829736/1‑148 (MQ=255) gCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGa < 1:2067759/148‑1 (MQ=255) cTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGTCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGAt < 2:2631532/148‑1 (MQ=255) cTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGGAACTGGAt < 1:1899211/148‑1 (MQ=255) ttGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCg > 2:1793284/1‑148 (MQ=255) tGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCgg > 2:2385438/1‑148 (MQ=255) cacaATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCggtgg > 1:2001611/1‑148 (MQ=255) acaATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATTCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCggtggt > 1:1717596/1‑148 (MQ=255) acaATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCggtggt > 1:1054384/1‑148 (MQ=255) caATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGtt > 1:895188/1‑148 (MQ=255) caATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGtt > 1:3183310/1‑148 (MQ=255) aaTTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTg < 2:3319214/148‑1 (MQ=255) aTTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAGGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGa > 1:3326668/1‑148 (MQ=255) aTTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATTCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGa > 2:2237242/1‑148 (MQ=255) aTTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGa > 1:1191498/1‑148 (MQ=255) ttATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGaa > 2:1930463/1‑148 (MQ=255) gCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATgg > 1:2129639/1‑148 (MQ=255) cAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGc > 1:2260984/1‑148 (MQ=255) aaGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCAt < 2:3175156/148‑1 (MQ=255) gTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATca < 1:2251626/148‑1 (MQ=255) gTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATca > 1:1278063/1‑148 (MQ=255) tCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATcac > 2:237680/1‑148 (MQ=255) cATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATcacc < 1:1951592/148‑1 (MQ=255) attcggcGTTACTTGGTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTTAACCAAAAGGATTAAACAATGGCGGAGTATCAATCCAGCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATcacca < 1:1412135/142‑1 (MQ=255) tACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATcaccac > 2:691151/1‑148 (MQ=255) tACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGAAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATcaccac > 2:153263/1‑148 (MQ=255) aCGCCTTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACg < 2:1489206/148‑1 (MQ=255) aCGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACg > 1:2766344/1‑148 (MQ=255) cGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCgg < 1:3077128/148‑1 (MQ=255) cGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCgg < 1:175173/148‑1 (MQ=255) cGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCgg > 2:1201099/1‑148 (MQ=255) gTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCggg < 2:2505883/148‑1 (MQ=255) gTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCggg > 1:1818258/1‑148 (MQ=255) ttAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGt > 2:1136641/1‑148 (MQ=255) aTTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGa < 2:396397/148‑1 (MQ=255) tGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGaaa < 2:1472244/148‑1 (MQ=255) tttctttTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACt > 1:740403/1‑148 (MQ=255) ttctttTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTc > 2:3374988/1‑148 (MQ=255) tttttGGCGTAAGCGTAAGATGCTTCATCTGGTTAAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCtt < 2:1864025/148‑1 (MQ=255) ttGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAg > 1:453637/1‑148 (MQ=255) tGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGa > 2:3269747/1‑148 (MQ=255) gtaagcgtaagATTCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAaga < 1:507947/148‑1 (MQ=255) taagcgtaagATTCTTCATCTGGTTTAAACCAAAAGGTTTAAACAATGGCGGATAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagag < 1:2478734/148‑1 (MQ=255) taagcgtaagATTCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagag > 1:609140/1‑148 (MQ=255) taagcgtaagATTCTTCATCTGGTTTAAACAAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagag < 1:3451154/148‑1 (MQ=255) taagcgtaagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagag > 2:108208/1‑148 (MQ=255) taagcgtaagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagag > 1:1773490/1‑148 (MQ=255) agcgtaagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagagag < 1:2533099/148‑1 (MQ=255) agcgtaagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAagagag > 2:1304656/1‑148 (MQ=255) gtaagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTg < 1:1343311/148‑1 (MQ=255) taagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTgg > 2:3134481/1‑148 (MQ=255) taagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTgg > 1:2552951/1‑148 (MQ=255) aagATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTggg < 2:1759296/148‑1 (MQ=255) agATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGga > 1:1488377/1‑148 (MQ=255) gATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGgag > 1:422086/1‑148 (MQ=255) caTGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGgag > 2:3051854/2‑148 (MQ=255) gCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAAc > 1:2943063/1‑148 (MQ=255) | CAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAAC > CP009273/4053628‑4053921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |