| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,165 | G→C | 7.7% | intergenic (‑99/+496) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,165 | 0 | G | C | 7.7% | 498.0 / 4.5 | 171 | intergenic (‑99/+496) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (63/92); new base C (10/6); total (73/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 178 total aligned reads displayed.
CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAA > CP009273/360018‑360310 | cGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATTATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGGGTGGCAACg > 1:56290/1‑148 (MQ=38) cTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGtt > 2:246188/1‑148 (MQ=255) cTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAAAGtt > 1:1184998/1‑148 (MQ=255) gCCAGCGGCTTAACATCCCGCCCCACCATCCAGTGCTGGCGCTCCGATTTTACGCTGCCAAACTTGAGATTCCCGAGCCCCAATTCGGGGCTTTTTTTGGGGGGCGTCCTGCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa < 1:1702598/148‑1 (MQ=16) cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa < 2:2352011‑M1/67‑1 (MQ=255) ccAGCGGCTTCCCAACCCGCGCCCCCAGCCAGGGCTGGCGCTCCGATGATAAGCTGTCAAACATGAGAATGCCGATCCCCAATTCCTGGCAGTTTAGGGCGGGGGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa < 1:247989/148‑1 (MQ=25) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa < 1:3555071/148‑1 (MQ=255) ccAGCGGCTTACCAACCAGCGCCCCCATCCAGTGCAGGAGCTCCGATGATAAGCTTTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa < 1:3555036/148‑1 (MQ=255) tcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAACGTTCAAata < 1:827398‑M1/70‑2 (MQ=255) tcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATc < 1:1496404‑M1/70‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc > 2:2784220/1‑148 (MQ=255) cgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCCGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCt < 2:2570966‑M1/74‑1 (MQ=255) gacaaccaccagatcaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc > 2:2664637‑M1/74‑148 (MQ=255) cTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc > 2:1340283/1‑148 (MQ=255) cTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGGTCAAATCCGcgc > 1:2579595/1‑146 (MQ=255) acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACg > 2:2661277‑M1/73‑134 (MQ=255) acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACg > 2:2661281‑M1/73‑134 (MQ=255) acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACg < 1:2661278‑M1/62‑1 (MQ=255) acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATccgcgcc < 1:2867577‑M1/76‑4 (MQ=255) tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGGCGTGGGTTCGCACCGGGCAAATCCGCTccc > 1:1056232/1‑148 (MQ=37) aaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattTATTCCTGGCAGTTTATGGCGGGCGTGCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAACGGTGAAATGGGCTCCcg < 2:945614‑M1/78‑1 (MQ=255) aaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcg < 2:1495498‑M1/78‑1 (MQ=255) caacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTGCAAATCCGCTCCcggcg < 1:2016663‑M1/81‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa < 2:3213774/148‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa < 1:69619‑M1/83‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCGTGGCAACGTTGAAATGCGcgcccgggggc < 1:1922557‑M1/83‑5 (MQ=255) ccaTCCCGGGCAGGAGCTCCGATGATAAGCTGACAAACATGAGAATGCCGATCCCCATGTCCGGGCAGTTTAGGGGGGGCGTCGGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa < 1:3393060/148‑1 (MQ=18) aTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt < 2:3132497/148‑1 (MQ=255) aTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt < 2:100725/148‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACtg < 2:2804614/148‑2 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACtg < 2:1032750/148‑2 (MQ=255) tGCAGGAGCTCCGATGATAAGCTGTAAACCATGAGAATTCCGAGCCCCAATTCCGGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgag < 1:3141219/148‑1 (MQ=18) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTcaggtg < 2:419431‑M1/100‑3 (MQ=255) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgag > 1:250778‑M1/49‑148 (MQ=255) cAGGCGCTCCTATGATACGCTGACAAACATGACAATGCCCAGCCCAAATTCCTGGCTGTTTAGGGCGGGCGTCCGCCCCCCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGagag < 1:2103819/148‑1 (MQ=17) agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCAACGTTCAAATCCGCGCCCGGCGGATGTGTGCTACTCCGGCGAGc < 1:2024324‑M1/103‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCAGCACCCGGCGGATTTGTCCTACTCAGGCGAGCGtt > 2:375750/1‑148 (MQ=255) gCTCCGATGAGACGCTGTCAAACATCACAATGCCGACCCCCAATGCCGGGCAGTTTCGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTc < 1:400536/148‑1 (MQ=14) ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACCTTCAAATCCCCTCCCCGCGGATTTGTCCTAATCCGGAGAGCGTTAAcc > 2:910435/1‑148 (MQ=18) ctgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACCCTCCCGGCGGCTGTGTCCTACTCAGGAGAGCGGTCACCGac < 2:2685424‑M1/113‑1 (MQ=255) ctgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCAACCTTCAAAAACGCTCCCGGCGGATTTGTCCTAATCAGGAGAGCGTTCACCGac < 1:2576470‑M1/113‑1 (MQ=255) tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGaca < 2:1694893‑M1/114‑1 (MQ=255) atAAGCTGTCAAACGTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa < 2:888125/148‑1 (MQ=255) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAAAGGTCAAAAACGCACCCCCCGGCATAGTGCTACAAAGGTGAGCGTTCACCGacaaa > 1:2654892/1‑148 (MQ=18) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACCTTCAAATACGCACCCGGCGGAAGTGTGCTACTGAGGAGAGCGTTCACCGaccaa > 1:2654307/1‑148 (MQ=18) tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACCTTCAAATACGCACCCCGCGGAATTTTACAAAGCAGGAGAGCGGTGAACGACAaacaac < 1:3512469‑M1/120‑1 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTGGCAACCTTAAAATACGCTCCCGGCGGATTTGTGCTACTAAGGAGAGCGGTCACCGACAaaaaac > 1:543110/1‑148 (MQ=17) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAaacaac < 2:346117/148‑1 (MQ=255) cTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTGAGGAGAGCGTTCACCGACAaaccacc > 2:3207991/1‑147 (MQ=255) cTGTAAAACATGAGATTTCCGAGCCCCATTTCCTGGATGTTTAGGGCGGGCGTCCTCCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca < 1:3027736/148‑1 (MQ=14) tttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCCAAGTTCAAATACGCTCCCCGCGGATTTTTGCTACTCAGGAGAGCGTTCACCGACAAACAACACATaa < 1:2938113‑M1/126‑1 (MQ=255) tttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa > 1:2595035‑M1/23‑148 (MQ=255) ttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa > 2:69619‑M1/22‑148 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTTGGTGGCCACCTTCAAAAAAGCACCCCGCGGCTTTGTCCGACGCAGGCGTGGGGTTACCGCACAACAACACATaaa > 1:1272402/1‑148 (MQ=12) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGCGAGCGTTCACCGCCAAACAACAGATaaa > 2:2592743/1‑148 (MQ=255) aaCATGAGAATCCCGACCCCCAATTCCTGGATGTTTTGGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa < 1:127176/148‑1 (MQ=14) cATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTGGCCAACTTGAAATACGCGCCCGCCGCGTTTTTCCCACATCGGCGAGCGGTGAACGACCCACAACCCATAAAAc > 1:3347000/1‑148 (MQ=12) tttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAAAGTTCAAATACGCTACCGGCCGAATTTTGCGACAAAGGAGAGCGTTGACCCACAAACAACagaaaaaaag < 1:3236504‑M1/130‑3 (MQ=255) tttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc < 2:1490111‑M1/129‑1 (MQ=255) tttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc > 1:1490111‑M1/19‑147 (MQ=255) ttgtaggctggtgaatgAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAAGAGATAAAACGa > 2:2967113‑M1/18‑148 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTGGCGACCGTGAAAAACGCGCCCCGCCGCTGTTTCCGACTCAGGGGAGCGGTGAACGACACACAACACAAAAAAcca > 1:3383868/1‑146 (MQ=9) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCAACCGTAAAAAACCCGCCCGGCGGCGTTGTGCTACAAAGGGGGGGGGTAACCCACAAAAAACCAATAAAAAGa > 1:2827843/1‑148 (MQ=9) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACCACAGATACTACGa > 2:2731927/1‑148 (MQ=255) ttttgccgggtgaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa > 2:550270‑M1/17‑148 (MQ=255) gagaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa < 2:1355560/148‑1 (MQ=255) gagaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa < 2:2759330/148‑1 (MQ=255) gagaAGTCCGATCCCCACTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa < 2:2374299/148‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa < 1:2673883/148‑1 (MQ=255) atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg < 2:120303‑M1/134‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACCAACAACAGATAAAACGTAAgg < 2:2709827‑M1/135‑1 (MQ=255) aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACCGTCAAATACGCTCCCGGCGGATTTGTCCGACTCAGGAGAGCGGTCACCGACAAACAACACATAAAAACAAAgtc > 1:550270/1‑146 (MQ=14) ttCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCCACGTTCAAATACGCTCCCGGCGGGTTTGTGCGACTCAGGCGTGCGTTGACCCACCAACAACAGATAAAAAGAAATGcc > 1:1746952/1‑148 (MQ=14) ttCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGcc > 2:2642501/1‑148 (MQ=255) ttCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTGGCAACGTTCAAATGCGCGACCGGCGGGTTTGTCCTACTCAGGAGTGCGTTAACCCACAAACCACAGATAAAAAGAAAGGcc > 1:2166723/1‑148 (MQ=14) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt > 2:160661‑M1/8‑148 (MQ=255) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt < 2:1728108‑M1/141‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCCTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCAGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt < 2:645144/148‑1 (MQ=255) ggaattaaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGGCGCAACGGTCCAATCCGGTCCCGGCGGATTTGGGCTACTCCGGCGAGCGTTCCCCGACCCACCCCAGCTAAATCGAACGGCCCCGtg > 2:2396201/7‑147 (MQ=2) aTCCCCAATTCCTGGCAGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc < 2:1850620/148‑1 (MQ=38) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc < 2:1850625/148‑1 (MQ=38) aattaaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCCACGGTCAAAAACGCGCCCCGCGGCTTTTTACAACTAAGGAGTGCGTTCACCGACAAACAACAGAAAAAACCAAACGCCCAGTCtt > 1:1202293/5‑148 (MQ=11) cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt < 1:569562/148‑1 (MQ=35) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCg < 1:2323430/113‑1 (MQ=35) tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTg < 2:3366001/148‑1 (MQ=11) tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACACAGGAGAGCGTTCACCGACCAACAACAGATAAAACCAAAGGCCCCGTCTTTCGACTg > 2:2280371/1‑148 (MQ=2) tagggcgggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCCGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt < 2:2139919/145‑1 (MQ=1) cccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:196716/148‑1 (MQ=11) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTTTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGTGCCTTTCGTTTTATTTGTTGCCTgggg > 2:583525/1‑148 (MQ=9) ccGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTACTCAGGAGAGCGGTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTGCGTTTTATTTGATGCCTgggg > 2:583490/1‑148 (MQ=9) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt > 2:3079892/1‑148 (MQ=34) cTCCGGGCCGTTGCGTCGCAACGTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACCAACAACAGATAAAACGAAAGGCCCAGTCTTTCGCCTGAGCCGTTCGTTTTATTTGATGGCGGgggaattggga > 2:1111089/1‑148 (MQ=11) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaattaat > 2:270156/1‑148 (MQ=255) gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 2:1304029/1‑148 (MQ=255) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTg > 2:2499496/1‑148 (MQ=255) tCGCAACCTTCAAATCCGCGCCCGGCGGATTTGTCCTACTCCCGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGa < 1:876573/148‑1 (MQ=255) tCGCAAAGTTCAAATCCGCTCCCGGCGGATTTGTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGa < 1:875616/148‑1 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCGTGGGGAATTGGGAATTAATTCTTGAAGACGaa > 2:2840428/1‑148 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTGAAGACGaa > 2:2840457/1‑148 (MQ=255) aCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTGAAGACGaaa > 1:2372335/1‑148 (MQ=255) | CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAA > CP009273/360018‑360310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |