| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 388,792 | C→A | 34.0% | pseudogene (367/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 388,792 | 0 | C | A | 34.0% | 354.6 / 183.2 | 217 | pseudogene (367/1449 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| Reads supporting (aligned to +/- strand): ref base C (56/87); new base A (35/39); total (91/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 218 total aligned reads displayed.
TCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAG > CP009273/388645‑388935 | cAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGt < 1:1335456/148‑1 (MQ=255) aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTa > 1:3037097/1‑148 (MQ=255) tAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGAc < 2:2475837/148‑1 (MQ=255) aaCTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACa > 1:124856/1‑148 (MQ=255) aCTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACaa > 1:1994337/1‑148 (MQ=255) cTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAAc > 1:1983009/1‑148 (MQ=255) tacggttacggtATTGTTGCTATTAACTCTGATGTTCACCTGACTATCAACGGTAACGTCGAAGTAGAAAACGGTACTGAACTGGATAACATATCTTTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACg < 1:3113679/148‑1 (MQ=255) tacggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACg > 1:605440/1‑148 (MQ=255) cggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCa < 1:2137628/148‑1 (MQ=255) ggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCaa < 1:3132622/148‑1 (MQ=255) cggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggc > 2:226086/1‑148 (MQ=255) tATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgct > 2:591531/1‑148 (MQ=255) tgttgCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctggc > 2:3377471/1‑148 (MQ=255) tgCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTggcgctggcgct > 1:2315198/1‑148 (MQ=255) gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTa < 2:1901753/148‑1 (MQ=255) gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTa < 2:231910/148‑1 (MQ=255) taagAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATc > 1:334021/4‑148 (MQ=255) aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCg < 1:563010/148‑1 (MQ=255) aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCg > 2:3511836/1‑148 (MQ=255) gAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCt < 2:2353789/148‑1 (MQ=255) aaCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg < 2:3421564/148‑1 (MQ=255) aaCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg < 2:964023/148‑1 (MQ=255) aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa > 2:2125220/1‑148 (MQ=255) aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa < 1:275258/148‑1 (MQ=255) aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa < 2:652717/148‑1 (MQ=255) aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGa < 1:1548310/148‑1 (MQ=255) ctctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAt > 1:2574891/1‑148 (MQ=255) ctctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAt < 1:1187417/148‑1 (MQ=255) ctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTa > 1:3500560/1‑148 (MQ=255) aTGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACaa < 2:1258170/148‑1 (MQ=255) aTGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACaa < 1:2695080/148‑1 (MQ=255) ggTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAg < 1:1376438/148‑1 (MQ=255) gTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGa < 1:866050/148‑1 (MQ=255) tCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTAt > 1:941519/1‑132 (MQ=255) tCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTAt < 2:942456/132‑1 (MQ=255) aCCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaa < 2:897953/148‑1 (MQ=255) aCCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaa > 2:2903317/1‑148 (MQ=255) tGACTATCAACGGTAACGGCGACGTATACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGa < 2:3245596/148‑1 (MQ=255) gACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaa < 2:2290573/148‑1 (MQ=255) aCTATCAACGGTACCGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaaa < 2:1717190/148‑1 (MQ=255) aCTAGCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaaa < 2:2598005/148‑1 (MQ=255) cTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAt < 2:2978847/148‑1 (MQ=255) tATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAtt < 1:1023735/148‑1 (MQ=255) tATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAtt < 2:844249/148‑1 (MQ=255) cAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATc < 2:1561962/148‑1 (MQ=255) cAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATc > 1:3224126/1‑148 (MQ=255) aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt < 2:3237093/148‑1 (MQ=255) aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt < 1:2802903/148‑1 (MQ=255) aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt < 1:2419881/148‑1 (MQ=255) aCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTa < 1:434821/148‑1 (MQ=255) gTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGt > 2:418542/1‑148 (MQ=255) gTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGt < 1:2475555/148‑1 (MQ=255) aCGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGt < 1:2427004/148‑1 (MQ=255) aCAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAg > 2:850418/1‑148 (MQ=255) cAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGc > 2:280887/1‑148 (MQ=255) aaCGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCa > 1:186178/1‑148 (MQ=255) tACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcgcg > 1:2633857/1‑148 (MQ=255) gAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCt > 1:3030289/1‑148 (MQ=255) aaCTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt > 2:297976/1‑148 (MQ=255) aaCTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt > 2:3086340/1‑148 (MQ=255) cTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTtct < 2:1079748/148‑1 (MQ=255) aaCAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgctg < 2:1748838/148‑1 (MQ=255) aaCAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgctg < 2:1429075/148‑1 (MQ=255) aGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCt < 1:1970260/148‑1 (MQ=255) aCAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGa > 2:2077206/1‑148 (MQ=255) aCAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGa > 1:1319490/1‑148 (MQ=255) cAATGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGAc > 2:1352313/1‑148 (MQ=255) aaTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGAcc > 2:2762595/1‑148 (MQ=255) aTGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt < 1:555422/148‑1 (MQ=255) aTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt > 1:836075/1‑148 (MQ=255) aTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt > 2:3299928/1‑148 (MQ=255) aTGTTGTTGCTGCAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCt > 1:1926511/1‑148 (MQ=255) ttgCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGc > 2:3297779/1‑148 (MQ=255) gctgcAACCGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCAt < 2:1994337/148‑1 (MQ=255) tgcAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATac < 1:2940549/148‑1 (MQ=255) aaCCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACAcc < 2:154433/148‑1 (MQ=255) aCCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCt > 1:1063557/1‑148 (MQ=255) aCCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCt < 1:144341/148‑1 (MQ=255) ccGGTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTa > 2:3000372/1‑148 (MQ=255) cGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCTCTGGCGCTATCGCTGATTAAAAAGATAAAGAAATTATCTTCGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTTACGTGGGTGCATACACCTAt < 2:738066/148‑1 (MQ=255) cGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTAt < 1:1419926/148‑1 (MQ=255) cGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTAt < 1:1419970/148‑1 (MQ=255) ggTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATc > 2:3102525/1‑148 (MQ=255) ggTAACTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATc < 2:622424/148‑1 (MQ=255) gTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCa < 2:2862513/148‑1 (MQ=255) tAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAg > 2:799203/1‑148 (MQ=255) tAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAg > 2:253134/1‑148 (MQ=255) aaCTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAgg < 2:509565/148‑1 (MQ=255) aaCTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAgg < 2:605440/148‑1 (MQ=255) aaCTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAgg > 2:3359490/1‑148 (MQ=255) aCTACAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGc < 2:2910370/148‑1 (MQ=255) aCTACAAAGTGAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGc < 2:2910744/148‑1 (MQ=255) cTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCt > 2:1996257/1‑148 (MQ=255) aCAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGa > 2:258965/1‑148 (MQ=255) cAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGaa > 2:1604282/1‑148 (MQ=255) cAAAGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGaa > 2:2554454/1‑148 (MQ=255) aaGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACa < 1:1392077/148‑1 (MQ=255) aGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAg < 1:2922272/148‑1 (MQ=255) aGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAg > 1:1986871/1‑148 (MQ=255) aGTTAGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAg > 2:3504398/1‑148 (MQ=255) | TCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAAGCTGACCTGGGTGCATACACCTATCAGGCTGAACAG > CP009273/388645‑388935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |