| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 58,723 | G→T | 31.2% | pseudogene (250/579 nt) | yabP → | pseudogene, pentapeptide repeats‑containing |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 58,723 | 0 | G | T | 31.2% | 428.7 / 169.7 | 227 | pseudogene (250/579 nt) | yabP | pseudogene, pentapeptide repeats‑containing |
| Reads supporting (aligned to +/- strand): ref base G (70/86); new base T (38/33); total (108/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 232 total aligned reads displayed.
ATCTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACTTTTTTCAT > CP009273/58576‑58868 | tCTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATga > 1:2194800/1‑148 (MQ=255) aCGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaa < 1:1175842/148‑1 (MQ=255) aCGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaa > 2:1253446/1‑148 (MQ=255) aCGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaa > 2:1253026/1‑148 (MQ=255) aCGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGaa < 2:1000979/148‑1 (MQ=255) aCGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGaa < 2:346647/148‑1 (MQ=255) cGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaaa > 1:3476286/1‑148 (MQ=255) cGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGaaa > 2:2756344/1‑148 (MQ=255) cTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAg > 1:3091575/1‑148 (MQ=255) cTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAg < 2:1605944/148‑1 (MQ=255) ttGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGt < 2:79909/148‑1 (MQ=255) gtgGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGttt < 2:2973345/148‑1 (MQ=255) gggAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTAt < 1:3042476/148‑1 (MQ=255) gggAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGATTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTAt < 2:2870446/148‑1 (MQ=255) gagaCGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCa > 1:2541200/1‑148 (MQ=255) cGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAg > 1:3306080/1‑148 (MQ=255) tttACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGc < 2:1823445/147‑1 (MQ=255) gTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGc < 2:2485335/148‑1 (MQ=255) tACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCt > 2:677197/1‑148 (MQ=255) cGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTgg > 2:1689488/1‑148 (MQ=255) cGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTgg > 1:2292393/1‑148 (MQ=255) aTCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAatt > 1:2859268/1‑148 (MQ=255) tCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAatta > 1:1222007/1‑148 (MQ=255) tCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAatta < 2:1968810/148‑1 (MQ=255) tGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAattatt > 2:2287586/1‑148 (MQ=255) tGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAattatt < 2:30710/148‑1 (MQ=255) cTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGATAGAAAAGTTTATCAATAGCCTGGAATTATTCAAt < 1:3320564/148‑1 (MQ=255) gTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATaaa < 2:1687882/148‑1 (MQ=255) aGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACtt < 2:460814/148‑1 (MQ=255) aGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTGTACTGGGGCTATCAACGAGCATGAGAGAGTAACGTTTATCAGTAGCCTGGACTTATTCCAGAAACtt > 2:3006637/1‑148 (MQ=255) gATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACttc > 2:3138008/1‑147 (MQ=255) aTAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTaa > 2:2188267/1‑148 (MQ=255) aTAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTaa > 2:282747/1‑148 (MQ=255) aaCAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAAc > 1:2116009/1‑148 (MQ=255) aaCAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAAc < 1:2605301/148‑1 (MQ=255) aCAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACa > 2:3272649/1‑148 (MQ=255) aCAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACa < 2:54307/148‑1 (MQ=255) aCTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATgcg > 2:421382/1‑148 (MQ=255) cTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAATACATGCGCaaaaaa > 2:2890390/1‑148 (MQ=255) cTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCaaaaaa < 2:1553129/148‑1 (MQ=255) cTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCaaaaaa < 2:1553119/148‑1 (MQ=255) ataAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATcc < 1:1393052/148‑1 (MQ=255) taAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCg > 1:735131/1‑148 (MQ=255) taAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCg > 2:1072293/1‑148 (MQ=255) aaaCTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCgg < 2:3372410/148‑1 (MQ=255) aaCTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGa < 1:1733704/148‑1 (MQ=255) aaCTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGa < 1:1547370/148‑1 (MQ=255) ttCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGa < 1:200892/148‑1 (MQ=255) tCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAg < 2:2719478/148‑1 (MQ=255) tCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAg < 2:3126452/148‑1 (MQ=255) tCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAg > 2:3288340/1‑148 (MQ=255) cTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGt < 1:2668476/148‑1 (MQ=255) cTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGt > 2:2420678/1‑148 (MQ=255) gTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATATCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTg > 1:2799239/1‑148 (MQ=255) tttCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCa > 2:1953230/1‑148 (MQ=255) ttCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCaa < 2:229948/148‑1 (MQ=255) tGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAggg > 2:467806/1‑148 (MQ=255) gAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGc > 1:495287/1‑148 (MQ=255) tAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAat < 1:1705555/148‑1 (MQ=255) aaCCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAata < 2:1092882/148‑1 (MQ=255) aaCCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAata < 2:3307357/148‑1 (MQ=255) aCCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAatat < 2:698130/148‑1 (MQ=255) ccAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATg > 1:1389938/1‑148 (MQ=255) aGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgcg > 1:2614061/1‑148 (MQ=255) aGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgcg > 1:358951/1‑148 (MQ=255) aGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATgcg < 1:94499/148‑1 (MQ=255) ggCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTggg > 1:3274919/1‑148 (MQ=255) ggCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTggg > 2:2229757/1‑148 (MQ=255) cATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGcc > 2:364450/1‑148 (MQ=255) cATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGcc > 2:1420646/1‑148 (MQ=255) cATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGcc > 1:3485836/1‑148 (MQ=255) cAACGCCTCATAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAg < 1:1253197/148‑1 (MQ=255) cAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAg > 1:208360/1‑148 (MQ=255) cAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAg < 1:3008200/148‑1 (MQ=255) cAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAg < 1:935005/148‑1 (MQ=255) cAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAg > 2:2082914/1‑148 (MQ=255) aaCGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGa < 2:3556728/148‑1 (MQ=255) cTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAACAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTc < 2:2352847/148‑1 (MQ=255) cTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTc > 1:697397/1‑148 (MQ=255) aTACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGat > 1:1451933/1‑148 (MQ=255) tACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGata < 1:2203193/148‑1 (MQ=255) tACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGata < 1:2366345/148‑1 (MQ=255) aCTTTACTGGGGCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGatat > 2:2774247/1‑148 (MQ=255) tttACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCg < 1:442737/148‑1 (MQ=255) tACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGAGGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAg < 2:2599937/148‑1 (MQ=255) cTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGtt < 1:2420678/148‑1 (MQ=255) ggggCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTaa > 2:1306102/1‑148 (MQ=255) ggggCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTaa < 1:647031/148‑1 (MQ=255) ggCTATCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAgt > 1:1517400/1‑148 (MQ=255) cTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAgtgt < 2:2800513/148‑1 (MQ=255) cTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGAGGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAgtgt < 1:1072293/148‑1 (MQ=255) tCAACGAGAATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGAGGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCAc < 1:1535164/148‑1 (MQ=255) cAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACt < 2:157422/148‑1 (MQ=255) cAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACt < 2:3343850/148‑1 (MQ=255) cAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACt > 1:1774344/1‑148 (MQ=255) cAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACt > 1:2767456/1‑148 (MQ=255) aaCGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtt < 1:421382/148‑1 (MQ=255) aCGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttt > 1:199592/1‑148 (MQ=255) gagaATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACttttt < 2:251887/148‑1 (MQ=255) agaATTAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACtttttt < 2:1221990/148‑1 (MQ=255) | ATCTTTCAACGCTTGTGGGAGACGTTACGCCATCTGTTCTGGTCAGATAAACAGACTGAGGCTTATAAACTTCTGTTCAATTTCGTGAATAACCAGACTGGCAACATCAACGCCTCAGAATACTTTACTGGGGCTATCAACGAGAATGAGAGAGAAAAGTTTATCAATAGCCTGGAATTATTCAATAAACTTAAAACATGCGCAAAAAATCCGGATGAGTTGGTCGCAAAGGGCAATATGCGCTGGGTCGCCCAGACCTTCGGGGATATCGAGTTAAGTGTCACTTTTTTCAT > CP009273/58576‑58868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |