Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,207,963 C→A 15.7% intergenic (‑504/+196) iraM ← / ← ycgX RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,207,9630CA15.7% 679.0 / 26.1 254intergenic (‑504/+196)iraM/ycgXRpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
Reads supporting (aligned to +/- strand):  ref base C (47/157);  new base A (48/2);  total (95/159)
Fisher's exact test for biased strand distribution p-value = 1.26e-22
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 257 total aligned reads displayed.

AGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATG  >  CP009273/1207816‑1208110
                                                                                                                                                    |                                                                                                                                                   
aGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAc                                                                                                                                                     <  2:1899179/148‑1 (MQ=255)
 ggTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATGTTAAca                                                                                                                                                    >  2:3355221/1‑147 (MQ=255)
   tttCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTTAACCg                                                                                                                                                   >  1:1095555/1‑148 (MQ=255)
     tCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTta                                                                                                                                                <  2:3470344/148‑1 (MQ=255)
          ttttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATaaaa                                                                                                                                           >  2:3087475/1‑148 (MQ=255)
            ttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACTTATTACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATa                                                                                                                                         <  2:1030554/148‑1 (MQ=255)
            ttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATa                                                                                                                                         <  1:1717633/148‑1 (MQ=255)
             tGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATaa                                                                                                                                        <  1:2666997/148‑1 (MQ=255)
              gAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAc                                                                                                                                       <  2:393815/148‑1 (MQ=255)
              gAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAc                                                                                                                                       >  2:1044844/1‑148 (MQ=255)
                 ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTa                                                                                                                                    >  1:271939/1‑148 (MQ=255)
                 ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATGTTAACCGTTATAAAATaaagga                                                                                                                                    >  2:797249/1‑144 (MQ=255)
                    tataGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTAtaa                                                                                                                                 >  2:3438732/1‑146 (MQ=255)
                     ataGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGGTTTTTTTAATATTTTTAAACTTATAAAAAAAAGTATaaa                                                                                                                                >  1:2539656/1‑148 (MQ=255)
                      taGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAATAACGTATaaaa                                                                                                                               >  2:423038/1‑148 (MQ=255)
                       aGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGGTTTTTTTAATATTTTTAACGTTTTAAAAAAAAATATAaaaa                                                                                                                              >  1:975600/1‑148 (MQ=255)
                        ggAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAg                                                                                                                             <  2:2742282/148‑1 (MQ=255)
                          aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTc                                                                                                                           <  2:1140822/148‑1 (MQ=255)
                          aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTc                                                                                                                           <  1:915145/148‑1 (MQ=255)
                          aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTc                                                                                                                           <  1:3142820/148‑1 (MQ=255)
                          aaTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAAGTATCAAAAGTc                                                                                                                           >  2:2506900/1‑148 (MQ=255)
                           aTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCa                                                                                                                          >  2:845288/1‑148 (MQ=255)
                           aTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCa                                                                                                                          >  2:579524/1‑148 (MQ=255)
                            tGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCaa                                                                                                                         <  1:2147756/148‑1 (MQ=255)
                              aTTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAAATTTAAACCTTATAAAAAAAACTAACaaaaataaaca                                                                                                                       >  1:2004766/1‑141 (MQ=255)
                               tttAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTATAAAAATTCAAGTg                                                                                                                      >  2:3108676/1‑148 (MQ=255)
                                     cTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATAAAAAGTCAAGTGATaaca                                                                                                                >  2:175425/1‑148 (MQ=255)
                                     cTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACCTTATAAAATAACGTATAAAAATTCAAATGATcaaa                                                                                                                >  2:3018875/1‑146 (MQ=255)
                                      tGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAATAAAGTATCAAAAGTCAACTGTTCACAt                                                                                                               >  2:1324853/1‑148 (MQ=255)
                                      tGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACAt                                                                                                               <  1:1840093/148‑1 (MQ=255)
                                       gTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATcacagt                                                                                                              <  1:679305/148‑3 (MQ=255)
                                        ttCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACAttt                                                                                                             >  2:2873969/1‑148 (MQ=255)
                                          ccTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCa                                                                                                           <  1:3549095/148‑1 (MQ=255)
                                          ccTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCa                                                                                                           <  1:1154568/148‑1 (MQ=255)
                                             ggCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAat                                                                                                        <  2:749300/148‑1 (MQ=255)
                                             ggCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAat                                                                                                        <  1:1467193/148‑1 (MQ=255)
                                             ggCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTAAACGTTATAAAATAAAGTATAAAAATTCAAAGGATCACATTTAAAat                                                                                                        >  2:2682273/1‑148 (MQ=255)
                                                       cATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGa                                                                                              <  2:1355561/148‑1 (MQ=255)
                                                         tataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAAGTATCAAAAGTAAAGTGATAACATTTCAAATATAAAGTTGATa                                                                                            >  2:1415816/1‑148 (MQ=255)
                                                         tataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAAGTATCAAAAGTACAGTGATCACATTTCAAATATCAAGTTGTTa                                                                                            >  2:1132551/1‑148 (MQ=255)
                                                         tataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTAAATATTTTAAACGTTATAAAAAAAACTATAAAAAGTCAAGTGATCACAATTAAAAAATAAAATTtata                                                                                            >  1:523997/1‑148 (MQ=255)
                                                           taACCGTATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGt                                                                                          <  2:1942277/148‑1 (MQ=255)
                                                             aactgatgatGACTAAACCAAAATACATTTGCGTTAAGTATTTAAACGGACGTGTGTCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATCAAAAGTAAAGTGATCACATTTCAAATATCAAGTTGATAGTAt                                                                                        <  1:303926/144‑1 (MQ=255)
                                                             aCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAt                                                                                        <  1:2093129/148‑1 (MQ=255)
                                                              ccGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                       <  1:430631/148‑1 (MQ=255)
                                                              ccGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                       <  1:429349/148‑1 (MQ=255)
                                                                ggATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAg                                                                                     <  2:1585728/148‑1 (MQ=255)
                                                                ggATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAg                                                                                     <  2:2834810/148‑1 (MQ=255)
                                                                  atgatgACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTc                                                                                   <  2:1858765/148‑1 (MQ=255)
                                                                    gatgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATTTTTAACCTTATAAAATAACCTATCAAAATTAAAGTGATAAAAATTCAAATATAAATTTTttattattattttg                                                                                 >  1:3459570/1‑143 (MQ=255)
                                                                     atgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTATCAAAAGTCAAGTGATCACATTTAAAATATAAAGTTGATAGTATTATTGTgg                                                                                >  2:1346217/1‑148 (MQ=255)
                                                                      tgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATAAGTTAAACGTTATAAAATAACGTAACAAAAGTCAAGTGATCACATTTCAAAAATAAAGGTGATATTATTAGTGTGGt                                                                               >  2:784704/1‑148 (MQ=255)
                                                                       gaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTg                                                                              <  2:2073349/148‑1 (MQ=255)
                                                                             aCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAAAATTTTAAACCGTATAAAATAAAATATAAAAATTAAAATTATAAAAATTCAAAAATAAAATTGATAGTTTTAGTTTGGTGtttttt                                                                        >  1:3102328/1‑148 (MQ=255)
                                                                             aCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAAGTATCAAAAGTCAAGTGATCACATTTCAAATATAAAGTTGATAGTATTAGTCTGGTGattatt                                                                        >  2:119017/1‑148 (MQ=255)
                                                                              ccAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGAttattt                                                                       <  1:2879003/148‑1 (MQ=255)
                                                                                aaaaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGAttatttat                                                                     <  2:1671104/148‑1 (MQ=255)
                                                                                 aaaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTTAACCTTATAAAATAAAGGATCAAAATTAAATTTATCAACATTAAAATTTAAATTTTTTAGTATTAGTGTGGTGTTTTTTTATg                                                                    >  2:634311/1‑148 (MQ=255)
                                                                                   aTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATggg                                                                  <  2:2054331/148‑1 (MQ=255)
                                                                                    tACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGt                                                                 <  2:3184525/148‑1 (MQ=255)
                                                                                    tACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGt                                                                 <  1:1441560/148‑1 (MQ=255)
                                                                                     aCATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACCTTATAAAATAAACTATAAAAAGTCAAGTGATCACAATTAAAATATAAAGTTGATAGTATTATTCTGGGGATTATTTATTGGTg                                                                >  2:1642325/1‑148 (MQ=255)
                                                                                       aTGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGAc                                                              <  2:152185/148‑1 (MQ=255)
                                                                                        tgtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACa                                                             <  1:2779467/148‑1 (MQ=255)
                                                                                            cGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATaa                                                         <  1:3510383/148‑1 (MQ=255)
                                                                                                aaGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAg                                                     <  1:2873724/148‑1 (MQ=255)
                                                                                                   tATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACa                                                  <  2:2423026/148‑1 (MQ=255)
                                                                                                     ttGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGt                                                <  1:2401761/148‑1 (MQ=255)
                                                                                                      tGACACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTa                                               <  2:3419961/148‑1 (MQ=255)
                                                                                                      tGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCACGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTa                                               <  1:3355275/148‑1 (MQ=255)
                                                                                                       gAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTAt                                              <  2:944788/148‑1 (MQ=255)
                                                                                                          aCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTaa                                           <  2:2098218/148‑1 (MQ=255)
                                                                                                           cGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAat                                          <  2:2678287/148‑1 (MQ=255)
                                                                                                            ggACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGTTGACAATAAAAAGACAGTATTAatc                                         <  2:1271371/148‑1 (MQ=255)
                                                                                                            ggACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatc                                         <  1:134775/148‑1 (MQ=255)
                                                                                                               cGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatcatc                                      <  1:345056/148‑1 (MQ=255)
                                                                                                                gtgtGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATAAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAAAAAAAATACAGTATTAatcatac                                     >  2:1116525/1‑146 (MQ=255)
                                                                                                                gtgtGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATcc                                     <  2:2563695/148‑1 (MQ=255)
                                                                                                                 tgtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCa                                    <  2:55480/148‑1 (MQ=255)
                                                                                                                 tgtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCa                                    <  2:2929309/148‑1 (MQ=255)
                                                                                                                  gtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCAt                                   <  1:1314892/148‑1 (MQ=255)
                                                                                                                  gtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCAt                                   <  1:2746420/148‑1 (MQ=255)
                                                                                                                     gCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATaga                                <  1:2301310/148‑1 (MQ=255)
                                                                                                                      cACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATagag                               <  1:1044844/148‑1 (MQ=255)
                                                                                                                         ggCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATa                            <  2:1563088/148‑1 (MQ=255)
                                                                                                                          gCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAg                           >  2:2318370/1‑148 (MQ=255)
                                                                                                                              ttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtctc                       >  2:2227942/1‑148 (MQ=255)
                                                                                                                                gttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTg                     >  2:1810035/1‑148 (MQ=255)
                                                                                                                                 tttttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGc                    <  1:3087475/148‑1 (MQ=255)
                                                                                                                                   tttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCAc                  <  1:1508387/148‑1 (MQ=255)
                                                                                                                                   tttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCAc                  <  1:2942121/148‑1 (MQ=255)
                                                                                                                                    ttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCACGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACt                 >  1:2611542/1‑148 (MQ=255)
                                                                                                                                     tataAATATTTTAACCGTTATAAATTAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTATCTGCACtt                <  1:1373178/148‑1 (MQ=255)
                                                                                                                                     tataAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACtt                <  1:2473675/148‑1 (MQ=255)
                                                                                                                                      ataAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACttt               <  1:724979/148‑1 (MQ=255)
                                                                                                                                        aaaTATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTa             >  1:1675292/1‑148 (MQ=255)
                                                                                                                                          atatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAtt           >  2:1543450/1‑148 (MQ=255)
                                                                                                                                                  aaCCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAATCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTa    <  1:191552/148‑1 (MQ=255)
                                                                                                                                                   aCCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTAt   >  1:630004/1‑148 (MQ=255)
                                                                                                                                                   aCCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTAt   <  1:791166/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
AGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATG  >  CP009273/1207816‑1208110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: