| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,769,763 | T→A | 100% | intergenic (+62/‑81) | aroD → / → ydiF | 3‑dehydroquinate dehydratase/putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,769,763 | 0 | T | A | 97.6% | 688.9 / 4.4 | 212 | intergenic (+62/‑81) | aroD/ydiF | 3‑dehydroquinate dehydratase/putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
| Reads supporting (aligned to +/- strand): ref base T (3/2); new base A (123/84); total (126/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 216 total aligned reads displayed.
GTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑TAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCG > CP009273/1769619‑1769906 | gTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑aaat < 2:2582521/148‑1 (MQ=255) cGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATt‑aaataaa < 1:1906963/148‑1 (MQ=255) gTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATaaaaa > 1:3188470/1‑148 (MQ=255) tAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCCCGGTATTAACTATTTTACACCAGGCATAAGCATTAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAat < 2:3259999/148‑1 (MQ=255) aaaaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAatat < 2:3404904/148‑1 (MQ=255) aaaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATAtt < 2:1116139/148‑1 (MQ=255) aaaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATAtt > 1:1663460/1‑148 (MQ=255) aaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATAttt < 1:439412/148‑1 (MQ=255) aaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTc < 1:1466433/148‑1 (MQ=255) gCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTg > 2:3082699/1‑148 (MQ=255) gCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTg < 2:2427687/148‑1 (MQ=255) tCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGt < 1:1042406/148‑1 (MQ=255) tCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGt > 1:1925173/1‑148 (MQ=255) cTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGtc > 2:1616100/1‑148 (MQ=255) tGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGtct < 2:896163/148‑1 (MQ=255) aGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTgc > 2:2569855/1‑148 (MQ=255) aGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTgc > 2:3362112/1‑148 (MQ=255) gggCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTgcg < 1:1226859/148‑1 (MQ=255) ggCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTgcgc > 1:2668703/1‑148 (MQ=255) gCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCt > 2:2734725/1‑148 (MQ=255) cAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑TAATAAAAATATTTCGTGAGTCTCTGTGCGCTa < 2:2666703/148‑1 (MQ=255) cAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑TAATAAAAATATTTCGTGAGTCTCTGTGCGCTa < 2:3242543/148‑1 (MQ=255) aaaTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTaa < 2:1407179/148‑1 (MQ=255) aaTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAAt < 1:2664272/148‑1 (MQ=255) agctcGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAAtt < 2:1999399/146‑1 (MQ=255) aTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑ACATAAAAATATTTCGTGAGTCTCTGTGCGCTAAtt > 1:2431120/1‑148 (MQ=255) aTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAAtt > 1:1161243/1‑148 (MQ=255) aTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAAtt > 1:2079865/1‑148 (MQ=255) cGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTcc > 1:3419246/1‑148 (MQ=255) tAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCAtt < 2:316430/148‑1 (MQ=255) aaaTGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCAttt < 1:2501904/148‑1 (MQ=255) aaTGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTg > 2:471081/1‑148 (MQ=255) tttGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTa > 2:1851821/1‑148 (MQ=255) aCGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGaaaa < 2:895310/148‑1 (MQ=255) cGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAAt > 2:542897/1‑148 (MQ=255) ggTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATc > 2:928094/1‑148 (MQ=255) ggTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATc > 2:74226/1‑148 (MQ=255) tATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATcac > 1:685435/1‑148 (MQ=255) ttAACTATATTACACCAGGCATAAGCAATAATAGTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt < 2:3522072/148‑1 (MQ=255) tAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATc < 2:1289772/148‑1 (MQ=255) tAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATc > 2:588578/1‑148 (MQ=255) aCTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCGATTTGGCGTAGGGAAAATCACATCTg > 2:1312684/1‑148 (MQ=255) aCTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTCGGGAAAATCACATCTg > 2:2830514/1‑148 (MQ=255) tATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGaa > 2:1024911/1‑148 (MQ=255) ttttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATc > 1:1701253/1‑148 (MQ=255) tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCa > 1:1849713/1‑148 (MQ=255) acacCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGa < 1:510099/148‑1 (MQ=255) ccAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt < 1:1430232/148‑1 (MQ=255) ccAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt < 1:3082699/148‑1 (MQ=255) aGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTaa < 1:3022209/148‑1 (MQ=255) aGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTaa < 1:3022340/148‑1 (MQ=255) cATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACaa > 2:773444/1‑148 (MQ=255) cATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACaa < 1:317586/148‑1 (MQ=255) aaGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGa > 1:1359601/1‑148 (MQ=255) aGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑TAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGaa > 2:94070/1‑148 (MQ=255) taataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTg > 1:2659356/1‑148 (MQ=255) atatTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTa > 1:2708616/1‑148 (MQ=255) atTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCAGAATCAGGAATTAACAATGAAACCTGTaaa > 2:1567186/1‑148 (MQ=255) ttCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACATGTAAAac > 2:2629808/1‑148 (MQ=255) gcggGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAaccacc < 2:1781718/148‑1 (MQ=255) cggGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCt < 1:313468/148‑1 (MQ=255) gAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATCAAACTATTTCTTGAGTCTCGGTGCGCTAATTCTCGATGTGGCGTCGGGACAATCACATCTGAATATGGAATTACGAATGCAGCCGGTAAAAGCACCTCGt > 1:1855208/1‑148 (MQ=255) gAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGt > 1:2154349/1‑148 (MQ=255) cacCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTAtt > 1:415251/1‑148 (MQ=255) cacCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTAtt > 1:2771316/1‑148 (MQ=255) acCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 1:1891036/148‑1 (MQ=255) acCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 1:1611990/148‑1 (MQ=255) acCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 2:2193993/148‑1 (MQ=255) acCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 2:1885930/148‑1 (MQ=255) acCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 2:1663460/148‑1 (MQ=255) acCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 2:3428230/148‑1 (MQ=255) acCCTCCCCGCAGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTa < 2:2277462/148‑1 (MQ=255) cccTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTaa < 2:1186/148‑1 (MQ=255) ccTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAAt > 2:1110864/1‑148 (MQ=255) ccTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAAt < 1:1684452/148‑1 (MQ=255) ccTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAAt < 1:3189030/148‑1 (MQ=255) cTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATg > 2:1648357/1‑148 (MQ=255) tCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATgg < 1:933953/148‑1 (MQ=255) tCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATgg > 1:1958906/1‑148 (MQ=255) ccccGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGa < 2:1161204/148‑1 (MQ=255) cccGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATAAGGAATTAACAATGAAACCTGTCAAACCACCTCGTATTAATGGAc > 2:2976831/1‑148 (MQ=255) cccGCCGAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATAAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGAc > 2:2976789/1‑148 (MQ=255) gAACTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGc > 1:1234179/1‑148 (MQ=255) aaatAAAAAATATATTCAATCGTATTAAAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGc < 1:550764/145‑1 (MQ=255) aaCTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGcc > 2:1716636/1‑148 (MQ=255) cTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCgg > 2:3138764/1‑148 (MQ=255) cTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCgg > 2:195445/1‑148 (MQ=255) cTAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCgg > 2:1367504/1‑148 (MQ=255) tAAAAAATATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGt > 2:3101980/1‑148 (MQ=255) aaaaaTATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTcc < 1:1110864/148‑1 (MQ=255) aaaTATATTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTg < 2:366111/148‑1 (MQ=255) atatatTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTc > 1:83486/1‑148 (MQ=255) atatatTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTATGTGCGCTAATTCTCCATTTGTCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGAATTAATGGACGAGTGCCGGTCCTGTc > 1:83861/1‑148 (MQ=255) atatTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCgg > 2:368788/1‑148 (MQ=255) atTCAATCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGca > 1:343924/1‑148 (MQ=255) aTCGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGa < 1:2885739/148‑1 (MQ=255) cGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCGCCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAg > 1:2191534/1‑148 (MQ=255) cGTATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAg > 2:2801954/1‑148 (MQ=255) gTATT‑AAATAAAAATATTCCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGc < 1:1185085/148‑1 (MQ=255) tATT‑AAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCGCATCTGAATCAGGAATTAACGATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCg > 2:1181929/1‑148 (MQ=255) | GTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATT‑TAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACCACCTCGTATTAATGGACGAGTGCCGGTCCTGTCGGCACAGGAAGCG > CP009273/1769619‑1769906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |