| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,820,443 | T→A | 6.1% | T246T (ACA→ACT) | astE ← | succinylglutamate desuccinylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,820,443 | 0 | T | A | 6.1% | 607.5 / 23.4 | 195 | T246T (ACA→ACT) | astE | succinylglutamate desuccinylase |
| Reads supporting (aligned to +/- strand): ref base T (75/108); new base A (10/2); total (85/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.54e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
Only 100 of 198 total aligned reads displayed.
GGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTG > CP009273/1820296‑1820590 | ggTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGgt > 1:1962239/1‑148 (MQ=255) tACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGtt > 2:3230746/1‑148 (MQ=255) cGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTtct > 1:2162901/1‑148 (MQ=255) tAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCAc > 1:1783716/1‑148 (MQ=255) aaaaCGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACg < 2:2208089/148‑1 (MQ=255) aaaCGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGa < 2:1777451/148‑1 (MQ=255) aaaCGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGa > 1:2753112/1‑148 (MQ=255) aCGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATa < 1:1307277/148‑1 (MQ=255) aCGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATa > 2:2673384/1‑148 (MQ=255) cGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATAc < 1:2121525/148‑1 (MQ=255) cGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGAGTTCTCACGATAc > 2:3275927/1‑148 (MQ=255) ccTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGac > 2:3221561/1‑148 (MQ=255) ctctCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAATTTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGaca < 1:2341596/148‑1 (MQ=255) ctcCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACAct < 1:137113/148‑1 (MQ=255) ctcCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACAct < 2:3486952/148‑1 (MQ=255) gTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCa < 2:2546157/148‑1 (MQ=255) tCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCAc < 2:1473019/148‑1 (MQ=255) ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCAcc < 1:2593880/148‑1 (MQ=255) ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCAcc > 2:2596817/1‑148 (MQ=255) ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCAcc < 1:2594356/148‑1 (MQ=255) ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCAcc < 2:2227669/148‑1 (MQ=255) ccTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCAcc > 2:3344686/1‑148 (MQ=255) tGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAg > 1:1853458/1‑148 (MQ=255) gcgcCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGa < 2:1347694/148‑1 (MQ=255) gcgcCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGa > 1:1200278/1‑148 (MQ=255) gtaccTTTCTCAACCGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAgcagcgcag < 1:656323/145‑1 (MQ=255) gTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAgcagcgcag > 1:201986/1‑148 (MQ=255) gTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAgcagcgcag > 1:2538501/1‑148 (MQ=255) ccTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCaa < 2:318941/148‑1 (MQ=255) ccTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCaa > 1:1481481/1‑148 (MQ=255) ccTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCaa < 2:112650/148‑1 (MQ=255) ctcAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTgcg < 1:484836/148‑1 (MQ=255) aaaCGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTg < 2:3271541/148‑1 (MQ=255) aCGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGc > 2:2758665/1‑148 (MQ=255) ggCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAg > 1:1163094/1‑148 (MQ=255) gCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGt < 2:1381992/148‑1 (MQ=255) gCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGt < 2:424683/148‑1 (MQ=255) gCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGt > 1:1434239/1‑148 (MQ=255) cATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGtt > 1:1229100/1‑148 (MQ=255) cATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGtt > 1:285350/1‑148 (MQ=255) aTAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTa < 2:2944614/148‑1 (MQ=255) aaaaTTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACt > 2:2475820/1‑148 (MQ=255) aaaaTTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACt > 2:2475947/1‑148 (MQ=255) aTTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCa > 2:2855687/1‑148 (MQ=255) aTTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCa > 1:1591601/1‑148 (MQ=255) ttCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCaa < 2:3541811/148‑1 (MQ=255) ttCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCaa > 2:1196926/1‑148 (MQ=255) cAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAAc < 1:2396474/148‑1 (MQ=255) gCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTg < 1:348534/148‑1 (MQ=255) cGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTgg > 1:858980/1‑148 (MQ=255) gtCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGa < 2:513260/148‑1 (MQ=255) tCACTTGCCAGATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGaa < 2:703692/148‑1 (MQ=255) cACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTAACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAg < 2:2573257/148‑1 (MQ=255) cACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGAGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAg > 2:2940184/1‑148 (MQ=255) cTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGAt > 2:3919/1‑148 (MQ=255) cTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGAt > 1:2236893/1‑148 (MQ=255) cTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGAt > 2:3043927/1‑148 (MQ=255) cTTGCCAGATGCAGTTCGCAGGACGGCGAGTGGCGAGTAATTTGCGAAACCCCCCGAGAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACGGGCGAAGAt < 2:3003540/148‑1 (MQ=255) ccATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGtt < 2:1612955/148‑1 (MQ=255) cATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGttt < 2:1241358/148‑1 (MQ=255) cATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGttt < 2:2315311/148‑1 (MQ=255) atatGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGtttt > 2:2111251/1‑148 (MQ=255) tatGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTg > 1:385462/1‑148 (MQ=255) atGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGc > 2:2071793/1‑148 (MQ=255) atGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGc < 2:1229100/148‑1 (MQ=255) tGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGcc > 1:1040092/1‑148 (MQ=255) tGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGcc > 1:942268/1‑148 (MQ=255) ttttCGTAGGATGTCGAGTGGCTTGTAATTTGCGAAACCACCCGATATCGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCaa < 1:2195977/147‑1 (MQ=255) tttCGTAGGACGGGGAGTGGCGTTTAATTTGCTAAACCACCCGATATCGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCaaa < 1:1513553/148‑1 (MQ=255) tttCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATCGCCGCGCAGCACGTGCGCTGGCAGGTCCTGCACACTGGCGAAGATCGGGTTGCCCaaa > 2:1852883/1‑148 (MQ=255) tttCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCaaa < 2:1412933/148‑1 (MQ=255) tttCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCaaa < 2:1434239/148‑1 (MQ=255) cGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAggg < 1:441652/148‑1 (MQ=255) aaGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCa < 1:2399871/148‑1 (MQ=255) ggACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCACTTGCGCTGGCAGTTCCTGCAAACTGGCGAAGATCGTGTTGCCCAAAGGGCAAc > 2:1640726/1‑148 (MQ=255) gACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACg < 1:1890647/148‑1 (MQ=255) cGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCt < 1:3492242/148‑1 (MQ=255) gagtggcgagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGc < 1:3044147/148‑1 (MQ=255) gtggcgagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCa < 2:2538501/148‑1 (MQ=255) gtggcgagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCa < 2:201986/148‑1 (MQ=255) tggcgagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCaa < 1:2653849/148‑1 (MQ=255) tggcgagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCa < 1:1354603/147‑1 (MQ=255) tggcgagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGAGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCaa > 2:2697983/1‑148 (MQ=255) gagtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTc < 1:2101071/148‑1 (MQ=255) agtAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTcc < 1:2933556/148‑1 (MQ=255) gttaTTTGCGAAACCAACCGATAACGGAGCGGCGGTGTTCTCACGATACCGACAATCTCACCAGATAGCAGCGCAGCAATTGCGCTGGAAGTTACTGCAAACTGGCGTAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCa < 1:3259741/145‑1 (MQ=255) gtAATTTGCGAAACCACCCGATAACGGAGCGGCGGAGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCa > 1:715256/1‑148 (MQ=255) ttGCGACACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTa < 2:361345/148‑1 (MQ=255) ttGCGAAACCACCCGATAACGGAGCGGCGGAGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTa < 1:3275927/148‑1 (MQ=255) aaaCCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGc < 1:621906/148‑1 (MQ=255) accaccCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCa > 2:3405937/1‑148 (MQ=255) aTAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCa > 2:93583/1‑148 (MQ=255) tAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCaa > 2:3537806/1‑148 (MQ=255) aaCGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCaaa < 1:2475828/148‑1 (MQ=255) aCGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCaaaa < 1:3465678/148‑1 (MQ=255) gcggcgGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCt < 2:477320/148‑1 (MQ=255) gcggcgGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCt < 1:3353410/148‑1 (MQ=255) cggcggTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCTg > 1:1789002/1‑148 (MQ=255) cggcggTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCTg > 2:1010898/1‑148 (MQ=255) cggAGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCTGgcg > 1:1253764/1‑148 (MQ=255) | GGTTACGGTAAAACGTTCCTCTCCGTCCTGCGCCAGCAATGTTCCTTTCTCAAACGGCATAAAATTCAGCGTGTCACTTGCCATATGCATTTCGAAGGACGGCGAGTGGCGAGTAATTTGCGAAACCACCCGATAACGGAGCGGCGGTGTTCTCACGATACCGACACTCTCACCAGATAGCAGCGCAGCAATTGCGCTGGCAGTTACTGCAAACTGGCGAAGATCGTTTTGCCCAAAGGGCAACGCTTTGCCAAGTTCCAGCGTACAGGCCAGCGCGCCAAAATGTCTGGCGCTG > CP009273/1820296‑1820590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |