| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,821,696 | A→T | 100% | L274Q (CTG→CAG) | astB ← | succinylarginine dihydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,821,696 | 0 | A | T | 97.4% | 597.2 / 4.6 | 189 | L274Q (CTG→CAG) | astB | succinylarginine dihydrolase |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base T (95/89); total (99/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 189 total aligned reads displayed.
AGGCAGCACCAACATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCAGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTGGGGATTCACC > CP009273/1821551‑1821839 | aGGCAGCACCAACATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGt > 1:1154670/1‑148 (MQ=255)aGGCAGCACCAACATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGt > 1:1156436/1‑148 (MQ=255) agcaCCAACATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACt < 2:3186472/148‑1 (MQ=255) caCCAACATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACtgt > 1:2075010/1‑148 (MQ=255) aCATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTg > 2:101634/1‑148 (MQ=255) atGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGgcgag > 2:2448416/1‑148 (MQ=255) tGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGgcgagc > 2:3554352/1‑148 (MQ=255) aaCCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGaa < 2:3431129/148‑1 (MQ=255) aCCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAAc > 2:898639/1‑148 (MQ=255) ccATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACg > 2:415302/1‑148 (MQ=255) atcatcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGcc < 1:962963/148‑1 (MQ=255) atcatcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGcc > 2:2471016/1‑148 (MQ=255) atcatcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGcc < 1:1620751/148‑1 (MQ=255) tcatcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGACCGCCt > 1:3445182/1‑148 (MQ=255) tcatcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCt > 2:1858596/1‑148 (MQ=255) catcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTg > 2:3344079/1‑148 (MQ=255) catcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTg > 2:2347992/1‑148 (MQ=255) catcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTg < 2:1751378/148‑1 (MQ=255) atcGCGGCTCAGCATTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACTGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGt < 1:2183230/148‑1 (MQ=255) tcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGtt > 2:2690972/1‑148 (MQ=255) tcGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGtt > 1:1960377/1‑148 (MQ=255) cgcgGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTtg > 1:3160043/1‑148 (MQ=255) cgcgGCTCAGCAGTTGGCTGTTAAACAGAGAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTtg < 2:459039/148‑1 (MQ=255) gcgGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTtgg > 2:1916057/1‑148 (MQ=255) cgGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTtggt > 1:1050197/1‑148 (MQ=255) cTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGc > 2:2783096/1‑148 (MQ=255) cagcagTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCaa > 2:2415218/1‑148 (MQ=255) ttGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGc < 1:2281541/148‑1 (MQ=255) ggCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCAc < 2:359132/148‑1 (MQ=255) cTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCt > 2:1204675/1‑148 (MQ=255) ttAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGc > 1:1978338/1‑148 (MQ=255) tAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCg > 1:503414/1‑148 (MQ=255) aaCAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGt < 1:2285264/148‑1 (MQ=255) aaCAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGt > 2:287706/1‑148 (MQ=255) cAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTa > 2:1345643/1‑148 (MQ=255) gATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACt > 2:3416479/1‑148 (MQ=255) aGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCAc < 2:1155351/148‑1 (MQ=255) ggTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACg > 2:1873073/1‑148 (MQ=255) aGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCa < 2:2153570/148‑1 (MQ=255) gACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCaa > 2:312355/1‑148 (MQ=255) acacCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAAt < 1:1712783/148‑1 (MQ=255) cacCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATc > 1:17454/1‑148 (MQ=255) cacCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATc > 1:3321333/1‑148 (MQ=255) acCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCa > 1:2983483/1‑148 (MQ=255) cGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACg < 2:1051837/148‑1 (MQ=255) cGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACg < 2:1747546/148‑1 (MQ=255) aTCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCa < 2:1435547/148‑1 (MQ=255) aTCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCa < 1:926570/148‑1 (MQ=255) aTCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCa < 1:2793562/148‑1 (MQ=255) cAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGGCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCAtt > 1:2816370/1‑148 (MQ=255) cAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCAtt > 2:2507273/1‑148 (MQ=255) aGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTa < 1:2643093/148‑1 (MQ=255) gACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTAt > 2:553122/1‑148 (MQ=255) acacGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATg > 1:3548485/1‑148 (MQ=255) acGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGaa > 1:2906775/1‑148 (MQ=255) acGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTCTGACTGGCGAGCGAAAGCCTGTTGTTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGaa > 2:299384/1‑148 (MQ=255) cGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGaaa < 1:1496237/148‑1 (MQ=255) cGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGaaa > 1:3309467/1‑148 (MQ=255) gAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGaaaaa < 1:1135488/148‑1 (MQ=255) aaCCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACg < 1:828147/148‑1 (MQ=255) cTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGccc < 2:2091133/148‑1 (MQ=255) cTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGccc > 1:58360/1‑148 (MQ=255) gAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCCTTATGAAAAACGCCCTg > 2:2024354/1‑148 (MQ=255) gAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTg > 1:3328685/1‑148 (MQ=255) gCCGTAAGTTCTATCGCCATAAAACAATTGACCCGCGCACGCTGTTTTGCCTGTAACTGTGACTGGCGAGCTAACGCCTGTTGGTGGAAAAA‑CAGCACCTGGCGGTTACTCACGGAAATCACGTAATTATGAAAAACGCCCTGGTCGa < 1:2118706/148‑1 (MQ=255) gCCGGAACTTCTATCGCCAAAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCGGGGGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGa < 1:63077/148‑1 (MQ=255) gCCGGAACTTCTATCCCCATAAAACCATGGACCCGCGCACGCAGGTTTGCCTGTAACTGTGAGTGGCGAGCGAACGCCTGTTGGTGGAAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGa < 1:2118669/148‑1 (MQ=255) ccGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGAt > 1:30680/1‑148 (MQ=255) cGGAACTTCTATCGCCATAAAACCATTGACCCGCGCCCGCAGTTTTGCCTTTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGAAAAA‑CAGCACCTGGCGGTTACTCACGGAAATCACGTCATTATTAAAAACGCCCTGGTCGATa < 1:3362666/148‑1 (MQ=255) aCTTCTATCGCAATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGt < 1:2836830/148‑1 (MQ=255) ttCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTcc > 1:2217027/1‑148 (MQ=255) tCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCg < 2:65936/148‑1 (MQ=255) tATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCggg < 2:3225175/148‑1 (MQ=255) aTCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGt > 2:1040070/1‑148 (MQ=255) cATAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCCCGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGc < 2:2075010/148‑1 (MQ=255) aTAAAACCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCt > 1:3362282/1‑148 (MQ=255) tAAAACCTTTGACCCGCGCACGATGTTTTGCCTGTAACTTTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCCCCTGGCGGTTACTCACGGAAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTg < 2:629243/148‑1 (MQ=255) aCCATTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCg > 1:2318874/1‑148 (MQ=255) aTTGACCCGCGCACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGAAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGaaa < 1:2348037/148‑1 (MQ=255) ttGACCCGCGCACGCAGGTTTGCCAGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGaaaa > 1:1001456/1‑148 (MQ=255) ttGACCCGCGCACGCAGGTTTGCCAGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGaaaa > 1:1001439/1‑148 (MQ=255) ttGACCCGCGCACGCAGGTTTGCCAGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGaaaa > 1:2865617/1‑148 (MQ=255) tgcccccGCGCACGCAGTTTTGCCTGTACCTGTGAGGGGCGAGCGACCGCCTGTTGGTGGAAAAA‑CCGCACGGGGCGTTTACCCCCGGAAATCACTTCATTATCAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGaaaa < 1:1548959/144‑1 (MQ=255) gcgcACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTTTGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTg < 1:2934272/148‑1 (MQ=255) gcgcACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTg < 2:2949596/148‑1 (MQ=255) gcgcACGCAGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTg < 2:381889/148‑1 (MQ=255) cgcacgctGGTTTGCCTGTACCTGTGACTGGCGAGCGACCGCCTGTGGGTGGAAAAA‑CCCCACCTGCCGGTTACCCACGGCAATCACGTCATAATCAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGt < 1:2506539/148‑1 (MQ=255) cgcacgctGGTTTGCCTGTAACGGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCGGGCGGTTACTCCCGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGt < 2:340120/148‑1 (MQ=255) cgcacgcaGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGt < 2:3309467/148‑1 (MQ=255) cgcacgcaGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGAAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGt < 2:692842/148‑1 (MQ=255) cgcacgcaGGTTTGCCTGAAACTGTGACGGGCGAGCGAACGCCTTTTGG‑GGCAAAACCAGCACCGGGCGGTTACTCACGGAAATCACGTCATTATTAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGt < 1:3359588/148‑1 (MQ=255) gcacgctGGTTTGCCTTTAACTGTGACGGGCGAGCGACCGCCTGTTGGGGGAAAAA‑CAGCACCTGGGGTTTACTCACGGCAATCACTAAATTATTAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGtt < 1:755361/148‑1 (MQ=255) gcacgcaGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGtt > 2:1660119/1‑148 (MQ=255) gcacgcaGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGtt < 1:3235654/148‑1 (MQ=255) cgcaGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTggg > 2:3172462/1‑148 (MQ=255) gcaGGTTTGCCTTTAAGTGTGACTGGCGAGCGAACGCCTGTGGGTGGAAAAA‑CAGCACCGGGGGGTTACTCACGGAAATCACGTCTTTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTgggg < 1:2448416/148‑1 (MQ=255) caGGTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTGGGGa > 2:3435800/1‑148 (MQ=255) ggTTTGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTGGGGAtt > 1:1810962/1‑148 (MQ=255) tGCCTGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTGGGGATTCAcc > 2:1303392/1‑148 (MQ=255) tGCCTGTAACTGTGACTGGCGAGCGAACGCCTGATGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTGGGGATTCAcc > 2:1271192/1‑148 (MQ=255) | AGGCAGCACCAACATCATGGAACCATCATCGCGGCTCAGCAGTTGGCTGTTAAACAGATAGGTAGACACCGTATCAGACACGGAAACCTGAGTTGCCGGAACTTCTATCGCCATAAAACCATTGACCCGCGCACGCAGGTTTGCCAGTAACTGTGACTGGCGAGCGAACGCCTGTTGGTGGCAAAA‑CAGCACCTGGCGGTTACTCACGGCAATCACGTCATTATGAAAAACGCCCTGGTCGATAACGTCCGGGTTTTGCTGGGCGAAAATCACCTGTTGGGGATTCACC > CP009273/1821551‑1821839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |