| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,323,622 | G→T | 7.0% | pseudogene (4260/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,323,622 | 0 | G | T | 7.0% | 744.0 / 20.5 | 199 | pseudogene (4260/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (80/105); new base T (5/9); total (85/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 199 total aligned reads displayed.
TTTCCAGCAATTGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCATTTTTGC > CP009273/2323477‑2323768 | tttCCAGCAATTGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTTAt > 1:413367/1‑148 (MQ=255) cAGCAATTGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCa < 1:3278775/148‑1 (MQ=255) aTTGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCgag > 2:850720/1‑148 (MQ=255) ttGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCCTCCTGCTCGCTGGTAAGCGTGATTTCATCgaga > 2:2238022/1‑148 (MQ=255) ttGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCgaga > 2:2536357/1‑148 (MQ=255) ttGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCgaga > 2:936138/1‑148 (MQ=255) ttGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCgaga < 2:562331/148‑1 (MQ=255) tGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGAt < 2:388135/148‑1 (MQ=255) gCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATa < 1:1493572/148‑1 (MQ=255) gCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATa < 1:8718/148‑1 (MQ=255) gCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATa < 1:1192023/148‑1 (MQ=255) cccTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACa > 2:3367445/1‑148 (MQ=255) ctgTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAgcgcc > 1:341594/1‑147 (MQ=255) ctgTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCa < 2:3473700/148‑1 (MQ=255) tttCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTTATTTCATCGAGATACAGCGCATCg < 2:383620/148‑1 (MQ=255) tttCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCg > 2:3551329/1‑148 (MQ=255) cgcgGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTTATTTCATCGAGATACAGCGCATCGCTg < 2:1161058/148‑1 (MQ=255) gctttGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTTATTTCATCGAGATACAGCGCATCGCTGTCaa < 1:793167/145‑1 (MQ=255) gcgTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCaa < 2:3326661/148‑1 (MQ=255) gcgTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCaa > 2:48481/1‑148 (MQ=255) cgTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAAt < 1:3091876/148‑1 (MQ=255) gTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAAtc < 2:2473198/148‑1 (MQ=255) ttGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAAtct > 1:28714/1‑148 (MQ=255) ttGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCAACGAGATACAGCGCATCGCTGTCAAtct > 1:2689953/1‑148 (MQ=255) gggTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCa < 1:782637/148‑1 (MQ=255) ggTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCAt < 1:2339710/148‑1 (MQ=255) ggTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCAt < 2:2685343/148‑1 (MQ=255) ggTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCAt < 1:3068787/148‑1 (MQ=255) tATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCt < 1:901792/148‑1 (MQ=255) aTTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTg < 2:586527/148‑1 (MQ=255) aTTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTg > 1:2976168/1‑148 (MQ=255) aCCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCa > 1:2454325/1‑148 (MQ=255) ccGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCAc > 2:3421090/1‑148 (MQ=255) ccGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCAc > 2:401293/1‑148 (MQ=255) cGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCAcc < 2:707233/148‑1 (MQ=255) aaTGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGt > 1:1050158/1‑148 (MQ=255) aaTGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGt > 1:2825523/1‑148 (MQ=255) aaTGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGt > 1:123896/1‑148 (MQ=255) aTGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTTATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGtt > 2:1726291/1‑148 (MQ=255) aTGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGtt > 1:1106011/1‑148 (MQ=255) gCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGc < 2:1408550/148‑1 (MQ=255) cccATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAg > 2:2193212/1‑148 (MQ=255) ccATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAACGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGa < 1:2225903/148‑1 (MQ=255) cATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGaa < 2:2379177/148‑1 (MQ=255) cATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGaa > 2:2912209/1‑148 (MQ=255) aTGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGact > 2:2367364/1‑146 (MQ=255) gttgtGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATaa < 2:1200124/148‑1 (MQ=255) ttgtGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATaaa < 1:582375/148‑1 (MQ=255) tgtgCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAg < 1:3125816/148‑1 (MQ=255) tgtgCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAg < 2:1906931/148‑1 (MQ=255) gtgCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGc < 1:2682578/148‑1 (MQ=255) gcgcTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTc < 2:986660/148‑1 (MQ=255) cgcTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCa < 1:2499846/148‑1 (MQ=255) gcTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCAt < 1:2365497/148‑1 (MQ=255) gcTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCAt < 1:3241521/148‑1 (MQ=255) tCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCAtct > 2:2854316/1‑148 (MQ=255) tCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCAtct > 2:266315/1‑148 (MQ=255) tCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCAtct < 2:2341489/148‑1 (MQ=255) aaCGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATctct > 1:2327670/1‑148 (MQ=255) cGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCttcttc < 1:2292804/148‑1 (MQ=255) cTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCAcc < 2:3507502/148‑1 (MQ=255) ccGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAgg > 2:1685649/1‑148 (MQ=255) cGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTTATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAggg < 2:342684/148‑1 (MQ=255) tgTGGCAGCGTTACTTCCTCCTTACCGTAGCGCAGAACTGGATCCTGCTCGCTGGTAAGCGTGATTTAATAGATATACAGCGCATCGCTGTAAATCTCATTGCTGGTCACCGGTTTCATAATTAAGCTGATCTCTTATTCACCAGGGa < 1:3297426/147‑1 (MQ=255) gCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAg > 2:1224366/1‑148 (MQ=255) gCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAg > 2:1841193/1‑148 (MQ=255) gCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAg > 2:244147/1‑148 (MQ=255) cAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGc < 1:1835832/148‑1 (MQ=255) tACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATAc > 1:1600039/1‑148 (MQ=255) tACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATAc > 2:1285931/1‑148 (MQ=255) ttCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAAc > 1:2198871/1‑148 (MQ=255) tCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACt > 2:1976159/1‑148 (MQ=255) cACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTgg < 1:1298363/148‑1 (MQ=255) tGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGtt > 2:1930557/1‑148 (MQ=255) tGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGtt < 1:1564403/148‑1 (MQ=255) aCCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAAGCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCa > 1:1342890/1‑148 (MQ=255) cGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAAc > 1:1996487/1‑148 (MQ=255) cgcAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCa < 1:401285/148‑1 (MQ=255) gAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCgg > 2:3084682/1‑148 (MQ=255) aaCTGCATCCTGCTCGCTGGTAAGCGTTATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGa > 2:148224/1‑148 (MQ=255) aaCTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGa < 1:1036030/148‑1 (MQ=255) aCTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGaa < 2:806660/148‑1 (MQ=255) aCTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGaa > 1:1300582/1‑148 (MQ=255) cTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAAt > 1:3350379/1‑148 (MQ=255) tCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTNCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTAc > 1:1805328/1‑148 (MQ=255) tCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTAc > 2:3544865/1‑148 (MQ=255) tCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTAc < 1:3367638/148‑1 (MQ=255) ccTGCTCGCTGTTAAGCGTGATTTCATCGAGATACAGCGAATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACt < 1:850720/148‑1 (MQ=255) cTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACtt < 2:3127326/148‑1 (MQ=255) cTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACtt < 2:2962858/148‑1 (MQ=255) cTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACtt > 2:2355343/1‑148 (MQ=255) tCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTttgtt < 2:1124441/148‑1 (MQ=255) ggTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTATTTTGTTGAGcc < 1:540916/148‑1 (MQ=255) ggTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGcc > 1:2527161/1‑148 (MQ=255) ggTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGcc < 1:266315/148‑1 (MQ=255) ggTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGcc < 1:2854316/148‑1 (MQ=255) ggTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGcc > 2:1160838/1‑148 (MQ=255) gTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCa > 1:1855394/1‑148 (MQ=255) gCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCAtttt < 2:28714/148‑1 (MQ=255) tGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCATTTTTGc > 1:1639107/1‑148 (MQ=255) | TTTCCAGCAATTGCCCCTGCTGTTTCGCGGCGTTGGGTTTATTGACCGAAATGCCCCATGTTGTGCGCTCAACGTCGGCTCCCGGTGGCAGCGGTACTTCCACCTGACCGTAGCGCAGAACTGCATCCTGCTCGCTGGTAAGCGTGATTTCATCGAGATACAGCGCATCGCTGTCAATCTCATTGCTGGTCACCGGTTGCAGAATAAAGCTCATCTCTTCTTCACCAGGGATAAGCCGATACAACTGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCATTTTTGC > CP009273/2323477‑2323768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |