Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,357,918 C→A 14.4% intergenic (‑164/‑115) yfaZ ← / → nudI outer membrane protein, putative porin/nucleoside triphosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,357,9180CA14.4% 700.3 / 57.3 223intergenic (‑164/‑115)yfaZ/nudIouter membrane protein, putative porin/nucleoside triphosphatase
Reads supporting (aligned to +/- strand):  ref base C (92/98);  new base A (18/15);  total (110/113)
Fisher's exact test for biased strand distribution p-value = 5.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 240 total aligned reads displayed.

AGCAATTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATT  >  CP009273/2357771‑2358065
                                                                                                                                                   |                                                                                                                                                   
aGCAATTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATac                                                                                                                                                     >  1:1124947/1‑148 (MQ=255)
aGCAATTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATac                                                                                                                                                     >  2:368109/1‑148 (MQ=255)
  cAATTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATacac                                                                                                                                                   >  2:157499/1‑148 (MQ=255)
  cAATTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATacac                                                                                                                                                   <  2:413275/148‑1 (MQ=255)
    aTTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATacacac                                                                                                                                                 >  2:1600428/1‑148 (MQ=255)
     ttAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAcacaca                                                                                                                                                >  1:659295/1‑148 (MQ=255)
     ttAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAcacaca                                                                                                                                                >  1:2440966/1‑148 (MQ=255)
     ttAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAaacaca                                                                                                                                                >  1:1260260/1‑148 (MQ=255)
        aTCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACaaaa                                                                                                                                             >  2:545929/1‑148 (MQ=255)
            aaaTTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAaataa                                                                                                                                         >  2:2894166/1‑148 (MQ=255)
                 cccAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAataataata                                                                                                                                    <  1:2559271/148‑1 (MQ=255)
                 cccAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAataataata                                                                                                                                    <  1:1403136/148‑1 (MQ=255)
                  ccAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAAtaataataa                                                                                                                                   >  2:3540213/1‑148 (MQ=255)
                   cAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAg                                                                                                                                  >  2:1080359/1‑148 (MQ=255)
                    aaaGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGt                                                                                                                                 <  1:592176/148‑1 (MQ=255)
                         tGCGGGATTTTACTGCCTGGCACAGAGTATTCAATGAGCGAAAAAAAGGATCTAGTCAATTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGt                                                                                                                            <  1:2869159/148‑1 (MQ=255)
                          gCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGtt                                                                                                                           <  1:492991/148‑1 (MQ=255)
                              gATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTatca                                                                                                                       >  2:2525812/1‑148 (MQ=255)
                              gATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTatca                                                                                                                       >  1:439340/1‑148 (MQ=255)
                               aTTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTatcat                                                                                                                      <  2:168169/148‑1 (MQ=255)
                                ttGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTatcatc                                                                                                                     >  1:2650405/1‑148 (MQ=255)
                                   tACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCa                                                                                                                  >  2:1412690/1‑148 (MQ=255)
                                     cTGCCTGGCACAGAGTATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCaaa                                                                                                                <  2:678390/148‑1 (MQ=255)
                                     cTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCaaa                                                                                                                <  2:678778/148‑1 (MQ=255)
                                     cTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCaaa                                                                                                                >  1:1054298/1‑148 (MQ=255)
                                       gacTGGCACAGAGGATTCAATTCGATAAAAAAAGGATATAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAag                                                                                                              <  2:63269/146‑1 (MQ=255)
                                       gCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAag                                                                                                              >  1:2157048/1‑148 (MQ=255)
                                          tGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAgaga                                                                                                           <  2:2300432/148‑1 (MQ=255)
                                            gCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGAtt                                                                                                         >  2:2639700/1‑148 (MQ=255)
                                               caGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACt                                                                                                      <  1:2096337/148‑1 (MQ=255)
                                                    gATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCAc                                                                                                 <  1:2509518/148‑1 (MQ=255)
                                                    gATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCAc                                                                                                 <  1:1449562/148‑1 (MQ=255)
                                                     aTTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACt                                                                                                <  1:1985526/148‑1 (MQ=255)
                                                     aTTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACt                                                                                                >  1:3005483/1‑148 (MQ=255)
                                                         aaTGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTca                                                                                            >  1:1771428/1‑148 (MQ=255)
                                                            gAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACat                                                                                         <  1:3003390/148‑1 (MQ=255)
                                                              gCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACatat                                                                                       <  2:3367501/148‑1 (MQ=255)
                                                               cGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATAtt                                                                                      >  1:944930/1‑148 (MQ=255)
                                                               cGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATAtt                                                                                      <  2:3120326/148‑1 (MQ=255)
                                                                     aaaGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAg                                                                                >  2:939022/1‑148 (MQ=255)
                                                                     aaaGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAg                                                                                >  2:938938/1‑148 (MQ=255)
                                                                     aaaGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAg                                                                                <  1:337216/148‑1 (MQ=255)
                                                                      aaGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGt                                                                               >  2:602923/1‑148 (MQ=255)
                                                                       atgATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTAAGtt                                                                              <  2:3288105/146‑1 (MQ=255)
                                                                        tgATCTAGTCACTTATTGTAACTAACTACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTa                                                                             <  2:1875884/147‑1 (MQ=255)
                                                                         gATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTAc                                                                            >  1:3287223/1‑148 (MQ=255)
                                                                          aTCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTAcc                                                                           >  1:1839325/1‑148 (MQ=255)
                                                                               gTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAACATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTAtt                                                                      <  1:1857272/148‑1 (MQ=255)
                                                                               gTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTAtt                                                                      >  2:1645476/1‑148 (MQ=255)
                                                                                  aCTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATtctc                                                                   >  1:393145/1‑148 (MQ=255)
                                                                                      aTTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATgg                                                               <  1:2515906/148‑1 (MQ=255)
                                                                                        tGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGtt                                                             >  2:2769561/1‑148 (MQ=255)
                                                                                         gTAACTAAATACTTCTTAAATACTTAACTGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGttt                                                            <  1:921189/148‑1 (MQ=255)
                                                                                          tAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTc                                                           <  2:1426979/148‑1 (MQ=255)
                                                                                           aaCTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCt                                                          >  1:579641/1‑148 (MQ=255)
                                                                                           aaCTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCt                                                          >  1:2370040/1‑148 (MQ=255)
                                                                                            aCTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCtt                                                         <  1:3479210/148‑1 (MQ=255)
                                                                                             cTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCttt                                                        >  2:2734620/1‑148 (MQ=255)
                                                                                                 aTACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTtttat                                                    >  1:806506/1‑148 (MQ=255)
                                                                                                    cttcttAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACCCACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTtttattta                                                 <  2:1658365/148‑1 (MQ=255)
                                                                                                        ttAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAg                                             <  1:2379205/148‑1 (MQ=255)
                                                                                                          aaaTAATTAAATGCAGAAAAAATAAACACACTTTATCGATACACACAAAAATAATCATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGa                                           <  1:2770565/148‑1 (MQ=255)
                                                                                                           aataatTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGaa                                          >  1:401278/1‑148 (MQ=255)
                                                                                                              aatTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAatat                                       >  1:831141/1‑148 (MQ=255)
                                                                                                               atTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATc                                      <  2:1124947/148‑1 (MQ=255)
                                                                                                               atTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATc                                      <  2:3005483/148‑1 (MQ=255)
                                                                                                                ttAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATcc                                     <  2:2157048/148‑1 (MQ=255)
                                                                                                                ttAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATcc                                     <  2:2372241/148‑1 (MQ=255)
                                                                                                                 tAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATccc                                    <  2:1210672/148‑1 (MQ=255)
                                                                                                                 tAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCAGGGTTTCTTTTTATTTATAAGGAATATccc                                    >  2:3271837/1‑148 (MQ=255)
                                                                                                                 tAAATGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATccc                                    <  2:1260260/148‑1 (MQ=255)
                                                                                                                    aTGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCtgt                                 >  1:1146590/1‑148 (MQ=255)
                                                                                                                    aTGCCGAAAAAATAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCtgt                                 >  2:1270652/1‑148 (MQ=255)
                                                                                                                    aTGCCGAAAAAATAAACACACTTGATCGAGACCCACAAAACTAATAATCAGTACCGGTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCtgt                                 <  1:2547821/148‑1 (MQ=255)
                                                                                                                      gCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGc                               >  1:3441368/1‑148 (MQ=255)
                                                                                                                       ccGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCg                              <  1:2894166/148‑1 (MQ=255)
                                                                                                                       ccGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCg                              <  1:497109/148‑1 (MQ=255)
                                                                                                                          aaaaaaTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACa                           <  1:1600428/148‑1 (MQ=255)
                                                                                                                              aaTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACgg                       <  2:2440966/148‑1 (MQ=255)
                                                                                                                              aaTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACgg                       <  2:659295/148‑1 (MQ=255)
                                                                                                                              aaTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACgg                       >  1:227695/1‑148 (MQ=255)
                                                                                                                               aTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGa                      >  1:2142877/1‑148 (MQ=255)
                                                                                                                               aTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGa                      >  1:103229/1‑148 (MQ=255)
                                                                                                                               aTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGa                      >  1:2516409/1‑148 (MQ=255)
                                                                                                                               aTAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGa                      >  2:478148/1‑148 (MQ=255)
                                                                                                                               aTAAACACACTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGa                      <  1:2705725/148‑1 (MQ=255)
                                                                                                                                tAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGAc                     >  2:2337343/1‑148 (MQ=255)
                                                                                                                                   acacacTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTAt                  >  1:2217228/1‑148 (MQ=255)
                                                                                                                                   acacacTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTAt                  <  2:3401724/148‑1 (MQ=255)
                                                                                                                                      cacTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGt               >  2:197259/1‑148 (MQ=255)
                                                                                                                                       acTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTa              <  1:1685063/148‑1 (MQ=255)
                                                                                                                                       acTTTATCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTa              <  1:1914601/148‑1 (MQ=255)
                                                                                                                                         tttATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATACGGAATATCCCTGTGCGACAACGGACTATTGTATg            <  1:524291/148‑1 (MQ=255)
                                                                                                                                           tATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGcc          >  1:2523868/1‑148 (MQ=255)
                                                                                                                                            aTCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGccc         >  2:3475297/1‑148 (MQ=255)
                                                                                                                                             tCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCt        <  1:55317/148‑1 (MQ=255)
                                                                                                                                             tCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCt        <  2:1477062/148‑1 (MQ=255)
                                                                                                                                             tCGATAAACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCt        <  1:545897/148‑1 (MQ=255)
                                                                                                                                              cGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCtt       <  2:2286917/148‑1 (MQ=255)
                                                                                                                                                   cacacaAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGAtt  <  1:3322982/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AGCAATTAATCAAAATTCCCAAAGCTGCGGGATTGTACTGCCTGGCACAGAGGATTCAATGAGCGAAAAAAAGGATCTAGTCACTTATTGTAACTAAATACTTCTTAAATAATTAAATGCCGAAAAAATAAACACACTTTATCGATACACACAAAAATAATAATAAGTACAGTTATCATCGCAAAAGAGATTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGCGACAACGGACTATTGTATGCCCTTTGATT  >  CP009273/2357771‑2358065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: