| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,556,786 | G→T | 100% | intergenic (+310/‑165) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,556,786 | 0 | G | T | 99.6% | 776.7 / ‑4.2 | 234 | intergenic (+310/‑165) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (112/121); total (112/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 234 total aligned reads displayed.
CTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAT > CP009273/2556642‑2556929 | ctcACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATg < 2:354545/148‑1 (MQ=255)ctcACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATg > 1:1606571/1‑148 (MQ=255) acaATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAg < 1:532210/148‑1 (MQ=255) caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAATCCAACAAGATGGGAGGTGAATTTTGTTATGCAGa < 2:1014342/148‑1 (MQ=255) caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATGTTGTTAGGCAGa > 2:3112572/1‑148 (MQ=255) aaTCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGAt < 1:1278891/148‑1 (MQ=255) ccccGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCACCAAGATGGGAGGTGAATTTTGTTATGCAGATCGc > 1:1388674/1‑148 (MQ=255) cTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCttttt > 1:22380/1‑148 (MQ=255) aCATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTccc < 2:311759/148‑1 (MQ=255) aCATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTccc < 2:2786423/148‑1 (MQ=255) aTTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCtt < 2:2088529/148‑1 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTc > 2:3068281/1‑148 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTc > 2:342629/1‑148 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTc < 2:3370192/148‑1 (MQ=255) tataTCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCa < 2:2176439/148‑1 (MQ=255) tataTCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCa < 2:2986606/148‑1 (MQ=255) atCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGc < 1:1569568/148‑1 (MQ=255) tCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCa > 2:3042907/1‑148 (MQ=255) tCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCa > 2:1268392/1‑148 (MQ=255) cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAt > 2:175820/1‑148 (MQ=255) cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAt > 1:1779578/1‑148 (MQ=255) cccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAttt < 1:1901862/148‑1 (MQ=255) ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCAtttt < 2:924202/148‑1 (MQ=255) tCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGt < 1:952693/148‑1 (MQ=255) tCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGt < 1:1147446/148‑1 (MQ=255) cTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGtt > 2:438613/1‑148 (MQ=255) cTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGtt > 1:2614840/1‑148 (MQ=255) ccGTTTTCAGGTTGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAAt < 1:664886/148‑1 (MQ=255) ccGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATTAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAAt > 1:1324355/1‑148 (MQ=255) ccGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAAt > 1:1113782/1‑148 (MQ=255) ttttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtca > 2:567569/1‑148 (MQ=255) tttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa > 1:2431703/1‑148 (MQ=255) tttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa < 2:1205388/148‑1 (MQ=255) tttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa < 2:2353512/148‑1 (MQ=255) tttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa < 1:3514867/148‑1 (MQ=255) tCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaatc < 2:246432/148‑1 (MQ=255) ggTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAc > 1:834609/1‑148 (MQ=255) tGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGa < 2:1628907/148‑1 (MQ=255) gggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaa < 2:2543117/148‑1 (MQ=255) gagaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAg > 2:1121549/1‑148 (MQ=255) gagaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAg > 2:1797172/1‑148 (MQ=255) gaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGc < 2:1956981/148‑1 (MQ=255) cTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAg < 1:1194781/148‑1 (MQ=255) aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTc > 1:3237889/1‑148 (MQ=255) tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTcc < 2:1638058/148‑1 (MQ=255) tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTcc > 2:431029/1‑148 (MQ=255) gccgccGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACAAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTcaca > 1:3303752/1‑148 (MQ=255) cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaa > 1:1820016/1‑148 (MQ=255) gccgACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaaca < 2:441067/148‑1 (MQ=255) aCGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaacaa > 1:2219509/1‑148 (MQ=255) aCGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATACAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaacaa > 1:2862924/1‑148 (MQ=255) cGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa > 1:1255188/1‑148 (MQ=255) cGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa < 1:2499687/148‑1 (MQ=255) tGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATa < 2:806519/148‑1 (MQ=255) tGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATa > 1:1054875/1‑148 (MQ=255) cacaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa < 1:1462376/148‑1 (MQ=255) acaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAg < 1:3497207/148‑1 (MQ=255) ttGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:881834/1‑148 (MQ=255) ttGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:320783/1‑148 (MQ=255) ttGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:2321520/1‑148 (MQ=255) tGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATggg > 2:514885/1‑148 (MQ=255) tGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATggg > 1:2028720/1‑148 (MQ=255) gATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGa < 2:1317511/148‑1 (MQ=255) ttAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGTGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAgg < 1:1004594/148‑1 (MQ=255) ttAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAgg < 2:2941170/148‑1 (MQ=255) tAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCGCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt > 2:2605507/1‑148 (MQ=255) tAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt > 1:2069742/1‑148 (MQ=255) aaTTTCTGAACATTCAAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt < 1:2344155/148‑1 (MQ=255) tttCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaa > 1:1223580/1‑148 (MQ=255) ttCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaa < 1:438613/148‑1 (MQ=255) ttCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaa < 2:1729896/148‑1 (MQ=255) tGAACATTC‑AAATCAACTCCCACCAAAGCCAATAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATg < 1:943420/148‑1 (MQ=255) tGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATg < 2:768470/148‑1 (MQ=255) aCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGaaa < 2:267736/148‑1 (MQ=255) cATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAAc > 1:187961/1‑148 (MQ=255) aTTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACg < 2:743803/148‑1 (MQ=255) ttC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACgg < 1:861824/148‑1 (MQ=255) aTCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGa > 2:3483370/1‑148 (MQ=255) cTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTgg > 2:524646/1‑148 (MQ=255) cTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTgg > 2:1143071/1‑148 (MQ=255) caccaAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCttt > 2:3237678/1‑148 (MQ=255) caccaAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCttt > 2:266175/1‑148 (MQ=255) ccaAAGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTAc < 1:2199685/148‑1 (MQ=255) aaaGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTg < 2:1575159/148‑1 (MQ=255) aaGCCAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTgg < 2:1364038/148‑1 (MQ=255) ccAACAAGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGa > 1:1283640/1‑148 (MQ=255) aacaaGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATg < 2:1168523/148‑1 (MQ=255) acaaGATTGGATGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg < 1:1993280/148‑1 (MQ=255) aaGATGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTa < 1:2451145/148‑1 (MQ=255) aTGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATg < 1:2829241/148‑1 (MQ=255) aTGGGAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATg < 2:1870073/148‑1 (MQ=255) gggAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt > 2:2836879/1‑148 (MQ=255) ggAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg < 2:1054875/148‑1 (MQ=255) ggAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg < 1:3042907/148‑1 (MQ=255) gAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg > 1:51444/1‑148 (MQ=255) gAGGTGAATTTTGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg > 1:2644991/1‑148 (MQ=255) ttttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGt < 2:28530/148‑1 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa < 1:3273614/148‑1 (MQ=255) tttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTACCAACAACAAAATAAAGATGGGAGGTAAAAATGAATCGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa < 1:81173/148‑1 (MQ=255) ttGTTATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt < 2:2440839/148‑1 (MQ=255) | CTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAT > CP009273/2556642‑2556929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |