| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,875,198 | C→A | 10.0% | E102* (GAA→TAA) | casC ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,875,198 | 0 | C | A | 10.0% | 758.7 / 39.9 | 220 | E102* (GAA→TAA) | casC | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| Reads supporting (aligned to +/- strand): ref base C (95/103); new base A (9/13); total (104/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
Only 100 of 227 total aligned reads displayed.
GTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGTAATA > CP009273/2875051‑2875345 | aTGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTtcat > 1:609259/1‑148 (MQ=255) gcAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCTTCAACTg > 2:1225463/1‑148 (MQ=255) aaTATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGAt < 1:442728/148‑1 (MQ=255) aaTATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGAt < 1:237854/148‑1 (MQ=255) atCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTa < 1:2545178/148‑1 (MQ=255) atCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTa < 1:2134198/148‑1 (MQ=255) tCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTAc > 2:1721265/1‑148 (MQ=255) cTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGgag < 2:3498236/148‑1 (MQ=255) tAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGagag < 2:644501/148‑1 (MQ=255) tAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGagag < 2:2634601/148‑1 (MQ=255) aGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGagca < 1:891651/148‑1 (MQ=255) aGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGagca < 2:818494/148‑1 (MQ=255) aaCTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGagcagc > 2:2214651/1‑148 (MQ=255) cTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAgcgc < 1:1729077/148‑1 (MQ=255) cTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAgcgc > 1:2754326/1‑148 (MQ=255) ttGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTa < 1:272854/148‑1 (MQ=255) agcagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATg < 1:2755554/148‑1 (MQ=255) agcagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATg > 1:961528/1‑148 (MQ=255) gcagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGt > 2:745195/1‑148 (MQ=255) gcagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTAGTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGt < 1:944379/148‑1 (MQ=255) cagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTc > 2:1570717/1‑148 (MQ=255) cagcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTc > 1:1822344/1‑148 (MQ=255) agcTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCt < 1:911209/148‑1 (MQ=255) cTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCTGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGAGCTAATGTCTTa < 2:396849/148‑1 (MQ=255) cTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTa > 1:2215190/1‑148 (MQ=255) cTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTa < 2:2186929/148‑1 (MQ=255) cTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTa > 1:3438888/1‑148 (MQ=255) tttttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTAt > 2:2505718/1‑148 (MQ=255) tttttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTAt < 1:1103972/148‑1 (MQ=255) ttttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATc > 2:325534/1‑148 (MQ=255) tttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCg < 1:2149731/148‑1 (MQ=255) tttATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCCTATCg < 1:1395395/148‑1 (MQ=255) catcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCgatgat < 2:1382560/148‑1 (MQ=255) catcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCgatgat < 1:1078603/148‑1 (MQ=255) tcCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGAttt > 1:2877817/1‑148 (MQ=255) tATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTc > 2:2602449/1‑148 (MQ=255) aTCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCa < 2:3351907/148‑1 (MQ=255) aTCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTAAAGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCa > 1:3501552/1‑148 (MQ=255) cAGCCTCTGCTTTTGCAACCTGCTCACAGAACAAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCaaa > 2:117754/1‑148 (MQ=255) aGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCaaaa < 2:762953/148‑1 (MQ=255) ccTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACg < 1:881678/148‑1 (MQ=255) tctGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGtt < 1:2211865/148‑1 (MQ=255) tctGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGtt < 1:1297916/148‑1 (MQ=255) ctGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTc < 1:2873817/148‑1 (MQ=255) tGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGt < 1:2502882/148‑1 (MQ=255) aaCCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGtttt > 1:1012285/1‑148 (MQ=255) aCCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGttttt > 2:2065197/1‑148 (MQ=255) tGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGcc > 2:2939165/1‑148 (MQ=255) acaGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCgaaga < 1:745195/148‑1 (MQ=255) acaGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCgaaga > 2:2868058/1‑148 (MQ=255) aGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAAc < 1:458055/148‑1 (MQ=255) aGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAAc > 2:211964/1‑148 (MQ=255) gAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACa > 2:2074757/1‑148 (MQ=255) gAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACa < 2:1302472/148‑1 (MQ=255) aaCCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACAt < 1:443729/148‑1 (MQ=255) aaCCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAAAGTTCACCAAGTTTTTGCCGAAGAACAt > 1:3055858/1‑148 (MQ=255) aaCCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGAGGATTTTTTGGTCAAAACGTTCACAAGGTTTTTGCCGAAGAACAt > 1:3345289/1‑148 (MQ=255) aCCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATc > 2:318606/1‑148 (MQ=255) ccAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATATTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCa < 1:2980397/148‑1 (MQ=255) aGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACg < 1:1533477/148‑1 (MQ=255) ggCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGt > 2:1809798/1‑148 (MQ=255) ggCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGt < 1:2798986/148‑1 (MQ=255) gCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTa > 2:1339804/1‑148 (MQ=255) cTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTaa < 2:1086733/148‑1 (MQ=255) aTTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAAtt > 1:1897302/1‑148 (MQ=255) ttCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATtgt < 2:2922211/148‑1 (MQ=255) tcCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCa < 2:2161552/148‑1 (MQ=255) tcCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCa < 2:864205/148‑1 (MQ=255) cacaACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGa < 1:3225911/148‑1 (MQ=255) cacaACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGa < 1:999817/148‑1 (MQ=255) caACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATg > 2:283481/1‑148 (MQ=255) caACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATg > 2:282438/1‑148 (MQ=255) aaCCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGa < 1:1924337/148‑1 (MQ=255) ccAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGGGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATg < 2:3439306/148‑1 (MQ=255) cAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATgg > 2:2689489/1‑148 (MQ=255) gggAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGtt < 2:60099/148‑1 (MQ=255) ggAGTAACCGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTc > 1:2039264/1‑148 (MQ=255) tAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTgag > 2:2643745/1‑148 (MQ=255) aaCCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTgaga < 2:1897302/148‑1 (MQ=255) aaCCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTgaga < 2:3552970/148‑1 (MQ=255) aCCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGAc > 2:1196684/1‑148 (MQ=255) ccGCATCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACt > 1:62969/1‑148 (MQ=255) aTCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGAt > 2:2984739/1‑148 (MQ=255) aTCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGAt < 1:1559/148‑1 (MQ=255) aTCGGCAGAAATCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGAt > 1:1780465/1‑148 (MQ=255) cGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTc > 2:1075377/1‑148 (MQ=255) gCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCAc > 1:2309081/1‑148 (MQ=255) gCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCAc < 1:1205355/148‑1 (MQ=255) gCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCAc < 2:961528/148‑1 (MQ=255) aaaTCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAat < 1:1639392/148‑1 (MQ=255) aaaTCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATTGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAat > 1:2178002/1‑148 (MQ=255) aaTCTTTTCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAata < 2:1846793/148‑1 (MQ=255) aTCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAatat > 2:2363260/1‑148 (MQ=255) tCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAtt < 1:469524/148‑1 (MQ=255) tCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAtt < 2:1822344/148‑1 (MQ=255) ttttCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAtttt > 2:303227/1‑148 (MQ=255) ttttCGGCTTAATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATAtttt < 2:2656640/148‑1 (MQ=255) tttCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTtg < 2:152819/148‑1 (MQ=255) ttCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTtgt < 1:2163/148‑1 (MQ=255) catcaACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGtaata < 1:17400/148‑1 (MQ=255) | GTATGGCGGCAATATCTTCCTTAAGAACTTTGAGCAGCTTTTTATCATCCAGATTATCAGCCTCTGCTTTTGCAACCTGCTCACAGAACCAGGCTATTTCTCCCACAACCCAGGGAGTAACCGCATCGGCAGAAATCTTTTCGGCTTCATCAACTGATTTACCGGAGAGCAGCGCTAATGTCTTATCGATGATTTTTTGGTCAAAACGTTCACCAAGTTTTTGCCGAAGAACATCACGTAATTGTGCAAGATGAATGGTTCTGAGACTGGATTCACCAATATTTTGTGCGTAATA > CP009273/2875051‑2875345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |