| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,988,355 | C→A | 100% | pseudogene (97/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,988,355 | 0 | C | A | 98.6% | 647.7 / ‑0.8 | 207 | pseudogene (97/633 nt) | ygeK | pseudogene; putative 2‑component transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/3); new base A (78/126); total (78/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. | |||||||||||
Only 100 of 211 total aligned reads displayed.
AATATGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATC > CP009273/2988209‑2988499 | aataTGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTATTCAGATCTTTATAGCCCCcaaca > 1:992561/1‑148 (MQ=255) atGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAAcc > 2:1434597/1‑148 (MQ=255) atGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAAcc > 1:1190983/1‑148 (MQ=255) atGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAAcc < 1:908858/148‑1 (MQ=255) gCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCat > 1:3252762/1‑148 (MQ=255) atctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCatat < 2:2322188/148‑1 (MQ=255) tatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaaa < 2:2636683/148‑1 (MQ=255) tatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaaa > 2:2390357/1‑148 (MQ=255) tatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaaa < 2:572216/148‑1 (MQ=255) ctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCa > 2:1145292/1‑148 (MQ=255) ctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCa > 2:1651953/1‑148 (MQ=255) ctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCa > 2:228230/1‑148 (MQ=255) ctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCACCAAAAACCTCATATAAATCa > 2:3436454/1‑148 (MQ=255) ttATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAg < 2:707272/148‑1 (MQ=255) tATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAgg < 1:2026608/148‑1 (MQ=255) aTGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGa < 2:3251404/148‑1 (MQ=255) tGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGAt < 2:2063339/148‑1 (MQ=255) tGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGAt < 1:3066815/148‑1 (MQ=255) gCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATa < 2:2263559/148‑1 (MQ=255) cGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATaa < 1:2144685/148‑1 (MQ=255) gATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAAt < 2:3096603/148‑1 (MQ=255) gATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAAt < 2:1326694/148‑1 (MQ=255) aTTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATg > 1:1728556/1‑148 (MQ=255) tttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGt < 2:1935902/148‑1 (MQ=255) tttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGt < 2:3006535/148‑1 (MQ=255) ttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTc < 1:1145292/148‑1 (MQ=255) aaCCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCg < 1:1178828/148‑1 (MQ=255) aCCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCga > 2:3387479/1‑148 (MQ=255) ccATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCgaga > 2:2641453/1‑148 (MQ=255) ccATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCgaga > 1:1519394/1‑148 (MQ=255) aTTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGaaa < 2:1244091/148‑1 (MQ=255) tttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATc > 2:2910852/1‑148 (MQ=255) ttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATcc < 2:3159324/148‑1 (MQ=255) ttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATcc < 2:1580696/148‑1 (MQ=255) aCGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCaa < 1:1256878/148‑1 (MQ=255) cGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAAt > 1:762605/1‑148 (MQ=255) aGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTa < 1:375447/148‑1 (MQ=255) ttCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGAGTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATc > 2:2718044/1‑148 (MQ=255) cGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATccc < 2:1543686/148‑1 (MQ=255) cGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATccc < 1:2626765/148‑1 (MQ=255) ccATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaat < 2:2224365/148‑1 (MQ=255) ttCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATaaa < 2:792231/148‑1 (MQ=255) tCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAAc > 1:1913612/1‑148 (MQ=255) ccACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACg > 1:261385/1‑148 (MQ=255) ccACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACg > 1:1470287/1‑148 (MQ=255) gCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGgctgct > 2:946229/1‑148 (MQ=255) ctcCTAAAATAAATTTTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGa < 1:1453631/148‑1 (MQ=255) ctcATAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGa < 1:239510/148‑1 (MQ=255) tcCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGaa > 2:580901/1‑148 (MQ=255) ccTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGaaa < 2:491084/148‑1 (MQ=255) tAAAATAAATTTTTTGGGTGTATATTTTTTACACTCCGATATAGCTTTCTTCATATATTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCAAATTACCCAATCAAACATACACGGCTGCTGATCTGAAACt < 1:316046/148‑1 (MQ=255) tAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACt > 2:3129418/1‑148 (MQ=255) aaaaTAAATTTTTTGGCTGTAGATTTGTTACACTCCGCTTTAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATTCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTa < 2:904457/148‑1 (MQ=255) aaaaTAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATTCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTa < 2:1498463/148‑1 (MQ=255) taaataTTTAGGCTTTAGTTTTGTTACACTCCGCTATAGCTTTCTTCCGATCTTTATAGCCCCCAAAAACCTCATATAAATCCGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaat < 1:3376648/148‑1 (MQ=255) atatTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaatttt > 1:2919428/1‑148 (MQ=255) tatTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaatttta > 1:2131702/1‑148 (MQ=255) atTTAGGCTTTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTAATATAAATCAGCATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaa < 1:3088620/148‑1 (MQ=255) tttAGGCTGTAGATTTGTTACACTCCGATATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaat < 2:2134627/148‑1 (MQ=255) ttAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaatt < 2:2375645/148‑1 (MQ=255) tAGGCTTTAGATTTTTTACACTCCTCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaattt < 2:28770/148‑1 (MQ=255) aGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaatttt < 2:1017604/148‑1 (MQ=255) gCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTc < 1:2302833/148‑1 (MQ=255) tGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATCGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTccc < 2:766417/148‑1 (MQ=255) tataTTTGTTACACTACGCTATAGCTTTCTTCAGATGTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCat < 2:3137266/145‑1 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTATTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATGATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCat < 1:3225266/148‑1 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCata > 1:3386918/1‑148 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatatat > 1:1089217/1‑148 (MQ=255) ttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATAtt > 1:353650/1‑148 (MQ=255) ttACACTCCGATATAGCTTTCTACATATATTTATAGCCCCAAAAAACCTAATATAAATCAGTATAATGTCCGAGAAATCAAATTATCCCATCAATCAAAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCAt < 1:309069/148‑1 (MQ=255) tACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATc < 2:1344331/148‑1 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCt < 2:2506327/148‑1 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGa > 1:1026670/1‑148 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAg < 2:1736390/148‑1 (MQ=255) ccGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgt < 1:3074978/148‑1 (MQ=255) ccGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgt > 2:1824074/1‑148 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgtg > 1:2683150/1‑148 (MQ=255) gCTATAGCTTTCTTCATATCTTTATAGCCCCAAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgtgt < 1:392310/148‑1 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTaa < 2:2522289/148‑1 (MQ=255) ataGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTaaa > 2:1866795/1‑148 (MQ=255) aGCTTTCTTCAGATCTTTATCCCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGATAAATCAAATTACCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATg < 1:617778/148‑1 (MQ=255) aGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATg < 1:1434597/148‑1 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGc < 2:2945432/148‑1 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGc < 2:3510396/148‑1 (MQ=255) tcttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTa < 1:269933/148‑1 (MQ=255) tcttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTa < 1:2065339/148‑1 (MQ=255) ttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAAc < 2:636827/148‑1 (MQ=255) tcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACg > 2:1763152/1‑148 (MQ=255) aGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGca < 2:2360358/148‑1 (MQ=255) gATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcat < 1:1962602/148‑1 (MQ=255) aTCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcatt < 1:3129650/148‑1 (MQ=255) ttATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATGATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattcatt < 2:3451914/148‑1 (MQ=255) ttATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattcatt > 2:2971544/1‑148 (MQ=255) ataGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGATAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTta < 1:3436454/148‑1 (MQ=255) aGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTtata > 2:2797833/1‑148 (MQ=255) ccccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatc < 1:1767748/148‑1 (MQ=255) ccccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatc > 2:1456394/1‑148 (MQ=255) cccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATACACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatca < 1:469672/148‑1 (MQ=255) cccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCATGAGTGTAAATGCTTTAACGCATTCATTTATAataa > 2:2146704/1‑146 (MQ=255) ccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatcat > 1:1997228/1‑148 (MQ=255) | AATATGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCATC > CP009273/2988209‑2988499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |