mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3547417 | 191 (0.950) | 5 (0.030) | 5/268 | NT | 2.7% | coding (974/2706 nt) | malT | mal regulon transcriptional activator |
| ? | CP009273 | 3547446 = | 179 (0.910) | coding (1003/2706 nt) | malT | mal regulon transcriptional activator | |||||
| * | ? | CP009273 | = 3498972 | 128 (0.630) | 7 (0.040) | 6/242 | NT | 4.7% | coding (408/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | CP009273 | 3499180 = | 173 (0.970) | coding (200/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | CP009273 | = 3180784 | NA (NA) | 10 (0.050) | 7/272 | NT | 1.3% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3745853 = | 772 (3.830) | coding (502/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 3179457 = | NA (NA) | 8 (0.040) | 6/270 | NT | 1.1% | intergenic (+9/‑89) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3745860 | 748 (3.710) | coding (509/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 2811301 | 178 (0.880) | 7 (0.040) | 6/234 | NT | 4.9% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 118 (0.690) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2164909 | NA (NA) | 5 (0.020) | 5/274 | NT | 2.1% | intergenic (+30/+1) | insF1/gatR | IS3 transposase B/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | CP009273 | = 3764630 | 233 (1.150) | coding (110/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | CP009273 | 361144 = | 7025 (34.810) | 48 (0.250) | 33/256 | NT | 0.71% | coding (600/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361139 | 6797 (36.060) | coding (605/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 360780 | 6603 (32.720) | 24 (0.120) | 13/272 | NT | 0.35% | coding (964/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | 360789 = | 7036 (35.120) | coding (955/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 310940 = | 187 (0.930) | 9 (0.050) +TC |
7/270 | NT | 4.1% | intergenic (+1/‑62) | eaeH/insE1 | pseudogene, attaching and effacing protein homology;factor; Not classified/IS3 transposase A |
| ? | CP009273 | 3764627 = | 235 (1.160) | coding (113/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||