| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3833562 = | 6 (0.030) | 176 (0.870) | 105/272 | NT | 96.7% | intergenic (‑209/‑13) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
| ? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
Only 100 of 438 total aligned reads displayed.
ACGAAACGCTATCGATAAGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGC > CP009273/3833415‑3833709 | aaacgCTATCGATAAGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAg > 1:746691/1‑148 (MQ=255) tATCGATAAGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGga > 2:2443899‑M2/1‑146 (MQ=255) tCGATAAGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATc > 1:1896878/1‑148 (MQ=255) aaGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgccc < 2:1372797‑M2/148‑10 (MQ=255) aaGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgccc < 2:3001352‑M2/148‑10 (MQ=255) aGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccc < 1:2739857‑M2/148‑11 (MQ=255) acgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGaaa > 1:1032488‑M1/130‑148 (MQ=255) aaaGGAATAAAAGTGTAATATAAAGTCTGGCACTTCTTACTGACCACGCTAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatattt > 1:3300671‑M2/1‑131 (MQ=255) aaaGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatattt < 2:790316‑M2/148‑18 (MQ=255) aaGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttc > 2:1666286‑M2/1‑130 (MQ=255) aaGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttc < 1:1456480‑M2/148‑19 (MQ=255) tgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGac < 2:917835‑M1/27‑1 (MQ=255) tgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGac > 2:56948‑M1/122‑148 (MQ=255) gAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccag > 2:124747‑M2/1‑127 (MQ=255) aaTAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccaga < 2:2166876‑M2/148‑23 (MQ=255) tAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagaca < 1:1474809‑M2/148‑25 (MQ=255) tAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACactac > 1:2112113/1‑148 (MQ=255) aaaaGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacat < 2:3265853‑M2/148‑26 (MQ=255) aaaaGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacat > 1:1221021‑M2/1‑123 (MQ=255) tccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGc < 1:3403080‑M1/35‑1 (MQ=255) aGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctg > 2:774143‑M2/1‑120 (MQ=255) tGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgtt > 2:238338‑M2/1‑118 (MQ=255) ggccctaagacatcaatcatcggttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgattttggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTa > 2:621808‑M1/111‑148 (MQ=255) gccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTAt < 2:1145919‑M1/39‑1 (MQ=255) tataAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcac > 2:2753518‑M2/1‑113 (MQ=255) taagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggatattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTc > 2:1687690‑M1/106‑148 (MQ=255) taAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACATCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCTATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcactt < 1:539237‑M2/148‑38 (MQ=255) agacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGATTATTTTCAc < 2:702262‑M1/45‑1 (MQ=255) gacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACt > 2:1990207‑M1/103‑148 (MQ=255) gacatcaatcatctgttctccaaggaatagtataaaaactagtattaagactatcacttatttatgtgatattggttttctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACt > 2:1295017‑M1/103‑148 (MQ=255) acatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACtt < 2:1601915‑M1/47‑1 (MQ=255) atcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACtttt < 2:1767462‑M1/49‑1 (MQ=255) ggCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccatt < 1:2593493‑M2/148‑46 (MQ=255) gCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccatatatttccagacatctgttatcacttaacccatta < 2:3142365‑M2/148‑47 (MQ=255) ttACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagccc > 2:2367331‑M2/1‑95 (MQ=255) tctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAg < 2:2951755‑M1/62‑1 (MQ=255) tGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg > 1:1794765‑M2/1‑91 (MQ=255) gACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc < 1:2948267‑M2/148‑59 (MQ=255) gACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc < 1:379367‑M2/148‑59 (MQ=255) aatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATc < 2:1266620‑M1/67‑1 (MQ=255) aatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATc < 2:3320916‑M1/67‑1 (MQ=255) aCCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgcc < 2:3049477‑M2/148‑60 (MQ=255) tgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGt < 1:2415008‑M1/69‑1 (MQ=255) cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcag > 2:3485077‑M2/1‑85 (MQ=255) cGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcag < 1:2784284‑M2/148‑64 (MQ=255) tagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATAc < 2:1811861‑M1/73‑1 (MQ=255) aaGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagata < 2:2421810‑M2/148‑67 (MQ=255) gcgcGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatatt > 1:2166876‑M2/1‑80 (MQ=255) taaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGa < 2:518091‑M1/78‑1 (MQ=255) taaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGa > 2:1410553‑M1/71‑148 (MQ=255) gcgTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcc > 2:2484976‑M2/1‑78 (MQ=255) cgTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccc < 2:2915703‑M2/148‑72 (MQ=255) tttCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgt < 1:2086393‑M2/148‑74 (MQ=255) ctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGcc < 2:2699041‑M1/84‑1 (MQ=255) gTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcg > 2:1050623‑M2/1‑71 (MQ=255) gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCttt < 2:2864390‑M1/87‑1 (MQ=255) taagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGc < 1:3122380‑M1/91‑1 (MQ=255) atgatgAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata > 2:2087953‑M2/1‑64 (MQ=255) tgatgaGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataa < 1:2188177‑M2/148‑86 (MQ=255) atcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGc < 1:1732052‑M1/98‑1 (MQ=255) tcacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCa < 1:3485590‑M1/99‑1 (MQ=255) cacttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAg < 1:3206613‑M1/100‑1 (MQ=255) cttatttaagtgatattggttgtctggagattcagggggccagtctACAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTc < 2:1827187‑M1/102‑1 (MQ=255) cttatttaagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTc < 1:3280106‑M1/102‑1 (MQ=255) cGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgca > 1:1566752‑M2/1‑54 (MQ=255) aaGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgc < 1:2208312‑M2/148‑101 (MQ=255) aagtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCaaaa < 2:400354‑M1/109‑1 (MQ=255) tcaAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg > 2:2230694‑M2/2‑46 (MQ=255) gCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg > 1:168063‑M2/1‑46 (MQ=255) gCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg < 2:1509523‑M2/148‑103 (MQ=255) agtgatattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAag > 2:2644737‑M1/39‑148 (MQ=255) aaCTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatg > 1:2698717‑M2/1‑43 (MQ=255) atattggttgtctggagattcagggggccagtctAAAGGTTTAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGaa > 1:802676‑M1/35‑148 (MQ=255) atattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGaa < 2:3091710‑M1/114‑1 (MQ=255) atattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGaa < 2:995764‑M1/114‑1 (MQ=255) atattggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGaa < 2:1879290‑M1/114‑1 (MQ=255) aCTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgc < 2:3449892‑M2/148‑107 (MQ=255) tACACTTATGCTTCATTCGATACAGATTTGTAATTGGTTGgatttggccatatatttccagacatctgttatcacttaacccattacaagaccgctgccgcagatattcccgtggagagcgatatcccagcgcactatgcggatggca > 2:319900‑M2/1‑40 (MQ=255) tACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcca > 1:3058615‑M2/1‑40 (MQ=255) tggttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAAcc < 1:480918‑M1/118‑1 (MQ=255) cacTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaatcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgaggatgccatt < 1:1253960‑M2/148‑111 (MQ=255) cacTTATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccatt < 1:87752‑M2/148‑111 (MQ=255) ttgtctggagattcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACg < 1:872269‑M1/121‑1 (MQ=255) tATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtt > 1:1279288‑M2/1‑34 (MQ=255) tATGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgt < 1:2455844‑M2/147‑114 (MQ=255) aTGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta < 2:196500‑M2/148‑116 (MQ=255) aTGCTTCATTCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta > 1:731752‑M2/1‑33 (MQ=255) ctggagattctgggggccagtctAAAGGTTCAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTAt > 1:2338442‑M1/24‑148 (MQ=255) gtatattccgggggccattatAATGTTTTAATCCATTAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTa > 1:1965166‑M1/22‑148 (MQ=255) tCGATACACATTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcg < 1:2558610‑M2/148‑125 (MQ=255) tcagggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGAt < 1:605167‑M1/133‑1 (MQ=255) agggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGAttt < 2:2330656‑M1/135‑1 (MQ=255) ggggccagtctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTAc < 2:2536266‑M1/137‑1 (MQ=255) acacATTTGTAAAAGGTTGgaattgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgc > 1:1860976‑M2/1‑19 (MQ=255) acaTTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcct > 2:2361957‑M2/1‑17 (MQ=255) caTTTGTAAACGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctc > 2:1741210‑M2/1‑16 (MQ=255) caTTTGTAAAAGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctc < 1:396887‑M2/148‑133 (MQ=255) ctAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAAttt < 2:3550269‑M1/146‑1 (MQ=255) aaaaGGTTGgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagg < 1:1152995‑M2/148‑140 (MQ=255) AAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCAGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGc > 2:877670‑M1/1‑148 (MQ=255) | ACGAAACGCTATCGATAAGAATAAAAAGGAATAAAAGTGGAATATAAAGTCTGGCACTTCTTACTGACCACGCAAGCGCGTTTCGTACAGCATGATGAGAGCGATGAAAGCAAACTACACTTATGCTTCATTCGATACACATTTGTAAAAGGTTGAATCCATGAAACCAACGACACTACTGCTTATTTTCACTTTTTTCGCTATGCCAGGCATCGTATACGCCGAGTCGCCTTTTAGCTCACTGCAGTCCGCAAAAGAGAAAACCACGGTATTACAAGATTTACGTAAAATTTGC > CP009273/3833415‑3833709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |