| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,662,660 | T→C | 100% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,662,660 | 0 | T | C | 99.2% | 993.8 / ‑3.0 | 249 | intergenic (‑112/‑292) | yhjA/treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (116/130); total (118/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 249 total aligned reads displayed.
GGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTT > CP009273/3662515‑3662801 | ggCCGATCGCGGTTATCGCTGAGACCATTTTCTTTTTTCTTCCCTCAGGGTGGTGAGTTATTGTGACCCAGAAATTTTTCCAGAATGCTGAAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg < 2:2141813/148‑1 (MQ=255)ggCCGATCGCGGTATTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg < 2:348831/148‑1 (MQ=255)ggCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg > 1:179578/1‑148 (MQ=255) gCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAgg > 2:3496425/1‑148 (MQ=255) cGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaa < 2:2294569/148‑1 (MQ=255) gATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaat < 2:1502916/148‑1 (MQ=255) gATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaat < 2:2158549/148‑1 (MQ=255) ggTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAatcaatca < 1:2062179/148‑1 (MQ=255) gTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAAtcaatcaa > 2:1382895/1‑148 (MQ=255) tAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATcaatcaat > 2:922424/1‑148 (MQ=255) aaTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAAtt < 2:2332601/148‑1 (MQ=255) aaTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAAtt < 1:249711/148‑1 (MQ=255) aTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAAGGCTGCACACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTa < 1:3122284/148‑1 (MQ=255) tACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTAc < 2:2056911/148‑1 (MQ=255) tACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCAAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTAc < 2:1209470/148‑1 (MQ=255) aCGTTAGAACATTTTAATTTTTCTTCCCTAACGTTGGTTTTTTATTGTTACCAATAAAATTTTCCAGAATTCTCCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACa < 1:1505829/148‑1 (MQ=255) aCGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACa < 1:3191783/148‑1 (MQ=255) aCGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACa < 1:1175751/148‑1 (MQ=255) agaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAat > 2:1130708/1‑148 (MQ=255) agaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAat < 2:1706312/148‑1 (MQ=255) agaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAat < 2:1705986/148‑1 (MQ=255) agaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAat < 1:3104985/148‑1 (MQ=255) agaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAat < 1:2649922/148‑1 (MQ=255) ccATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAataca > 1:2283704/1‑146 (MQ=255) cATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATaa < 1:2590073/148‑1 (MQ=255) ttttCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAAc < 2:773830/148‑1 (MQ=255) ttCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTa < 2:898352/148‑1 (MQ=255) tCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTAt < 2:2258179/148‑1 (MQ=255) attattCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCa < 1:1901772/148‑1 (MQ=255) ttattCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCaa < 2:2037014/148‑1 (MQ=255) ttattCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCaa < 2:2916630/148‑1 (MQ=255) tcttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAg < 1:365742/148‑1 (MQ=255) tcttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAg < 1:989360/148‑1 (MQ=255) ttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGAt < 1:3415655/148‑1 (MQ=255) ttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGAt < 1:1648990/148‑1 (MQ=255) tcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATa > 1:1496037/1‑148 (MQ=255) ccTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGc < 2:1966006/148‑1 (MQ=255) cTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGcc < 1:452634/148‑1 (MQ=255) tCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCt > 1:2147242/1‑148 (MQ=255) cACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCtg < 2:111026/148‑1 (MQ=255) cACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAAATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCtg > 1:209110/1‑148 (MQ=255) gtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCAACATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTAt < 2:3062613/148‑1 (MQ=255) gTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTAcc < 2:1323234/148‑1 (MQ=255) aTTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAg < 1:1336609/148‑1 (MQ=255) aTTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAg < 2:3470363/148‑1 (MQ=255) tgtgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGAt > 2:1118472/1‑148 (MQ=255) gACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAg > 1:3494415/1‑148 (MQ=255) aCCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAgg > 1:3156849/1‑148 (MQ=255) aCCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAgg > 2:246466/1‑148 (MQ=255) cacAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATATCCTGTGCCTATTACCCAGATCAGGa > 1:2110666/3‑148 (MQ=255) cAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAAt > 2:2223736/1‑148 (MQ=255) aGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATg < 1:931553/148‑1 (MQ=255) aaTTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCat < 2:1619384/148‑1 (MQ=255) aaTTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCat < 1:119312/148‑1 (MQ=255) tCCAGACTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAt < 2:2501845/148‑1 (MQ=255) tCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAt > 1:734894/1‑148 (MQ=255) tCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAt > 1:2523596/1‑148 (MQ=255) ccAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATg < 1:3528414/148‑1 (MQ=255) cAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGa < 1:1868099/148‑1 (MQ=255) aGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGAt > 1:2117914/1‑148 (MQ=255) gAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGAtt < 1:1446312/148‑1 (MQ=255) aaTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTg < 2:147569/148‑1 (MQ=255) ctgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcggc > 1:2485270/1‑148 (MQ=255) tgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcggcg > 1:3451253/1‑148 (MQ=255) gcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCga < 1:518257/148‑1 (MQ=255) aaaCGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgaga < 1:727387/148‑1 (MQ=255) cGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCa < 1:1098762/148‑1 (MQ=255) cGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCa > 2:1623750/1‑148 (MQ=255) gTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAg < 2:956691/148‑1 (MQ=255) ctctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGa > 2:1269998/1‑148 (MQ=255) ctctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAGGATTGCGGCGAGAGCAGGa < 2:2735851/148‑1 (MQ=255) ctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGAtt < 1:3185925/148‑1 (MQ=255) gCGAGACAAAGCAATCATAAAAAACAGGGAGATACTCTTTTTGAAATGAATCAATCAATTTCATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATCTTTGCGGCGAGAGCAGGATTGa < 2:2585002/148‑1 (MQ=255) cGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGaa > 2:939865/1‑148 (MQ=255) cGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGaa > 1:3339359/1‑148 (MQ=255) gagaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAAt < 2:2816988/148‑1 (MQ=255) agaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATg < 2:179578/148‑1 (MQ=255) gaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGt < 1:3566230/148‑1 (MQ=255) gCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaa > 2:3279914/1‑148 (MQ=255) catcatAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaa < 1:1043391/148‑1 (MQ=255) tcatAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatg > 1:226926/1‑148 (MQ=255) tAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatgaaa < 2:2593491/148‑1 (MQ=255) aaaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGaaaaa > 2:382912/1‑148 (MQ=255) aaaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGaaaaa > 2:765971/1‑148 (MQ=255) aaaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGaaaaa < 1:3013051/148‑1 (MQ=255) aaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaac > 1:2852173/1‑148 (MQ=255) aaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaac > 1:3081631/1‑148 (MQ=255) aaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaacaa > 1:2768798/1‑148 (MQ=255) aCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaacaac > 2:1051039/1‑148 (MQ=255) gggAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACAcc < 2:2845102/148‑1 (MQ=255) gggAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACAcc > 1:1687010/1‑148 (MQ=255) agaTACGCTTTTTGACTGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCaaa < 2:3398586/148‑1 (MQ=255) gaTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAAt < 2:466524/148‑1 (MQ=255) aTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATc > 2:674726/1‑148 (MQ=255) aCGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCgg > 1:3059249/1‑148 (MQ=255) aCGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCgg > 1:572150/1‑148 (MQ=255) cGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGt < 1:1931873/148‑1 (MQ=255) gCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTa < 1:1442908/148‑1 (MQ=255) gCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTa < 1:922413/148‑1 (MQ=255) cTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAt > 2:492990/1‑148 (MQ=255) | GGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTT > CP009273/3662515‑3662801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |