| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,860,159 | 0 | C | A | 100.0% | 482.3 / ‑6.7 | 182 | P33P (CCG→CCT) | ibpB | heat shock chaperone |
| Reads supporting (aligned to +/- strand): ref base C (4/0); new base A (57/115); total (67/115) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 182 total aligned reads displayed.
TTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGA > CP009273/3860015‑3860302 | ctctTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTTCGGAGGGAAg > 2:487714/1‑148 (MQ=255) ctctTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAg < 2:2409195/148‑1 (MQ=255) tcttctTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTCAAAGTTGTACGGAGGGAAGc > 2:310853/1‑148 (MQ=255) cttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGct < 2:3065278/148‑1 (MQ=255) cttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGct > 2:1095702/1‑148 (MQ=255) cttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTg < 2:749474/148‑1 (MQ=255) ttttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTgg < 1:1859581/148‑1 (MQ=255) tttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGc < 2:1107909/148‑1 (MQ=255) gctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTAAATGTTGTAAGGAGGGAAGCGCTGGCGTTCAcc > 1:509012/1‑148 (MQ=255) ccGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTGAATGTTGTAAGGAGGGAAGCTCTGGCTTTCACCGGc > 1:900811/1‑148 (MQ=255) cGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCg < 1:2164791/148‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCTCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTTTAAAATTTTTTCGGATGGGCGCTCGGGGTGTCACCGGCggt > 1:3000559/1‑146 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGtt < 2:1386697/148‑1 (MQ=255) gCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGtt < 2:466211/148‑1 (MQ=255) tGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCCATGTTGTTCGGAGGGAAGCTCTGGCTTTCACCCGCGTTTTg > 2:2517125/1‑148 (MQ=255) tGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTg < 1:2840736/148‑1 (MQ=255) tGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTg > 2:2517101/1‑148 (MQ=255) cTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAg < 2:2332168/148‑1 (MQ=255) cTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAg < 2:539977/148‑1 (MQ=255) cTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAg < 2:1360678/148‑1 (MQ=255) tttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTAAGGTGGGGAGCTCTGGGTTTGACCGGCGGTTTTGAGTg > 1:110386/1‑148 (MQ=255) ggCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAg < 2:2815085/148‑1 (MQ=255) gcgcGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTTCGGTGGGGAGCTGTGGCTTTCACCGGCGGTTTTGAGTGCG‑GTGGCCAGt > 2:3015115/1‑148 (MQ=255) gcgcGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGt > 2:1704555/1‑148 (MQ=255) gcgcGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGt < 1:3131467/148‑1 (MQ=255) cgcgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGtt < 1:728299/148‑1 (MQ=255) atctccTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTg < 1:2500558/144‑1 (MQ=255) cTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGTGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCaaa < 2:2977070/148‑1 (MQ=255) cTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCaaa < 1:740085/148‑1 (MQ=255) ttCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATTTTTTAAGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTTCTGTGCG‑GTGGGCCGTTTGtaagat > 2:2500558/1‑143 (MQ=255) ttGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGCTAGTGGTTATCGTCTCGTTTCAAAAATTTGTAAGGAGGGAACCTCAGGCGTTAACCCGCGATTTGCCGTGCG‑GGGGCCCGTATGGCAAAACCgcac > 2:2729736/1‑145 (MQ=255) tGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATcc < 2:514809/148‑1 (MQ=255) gAATCTCTACATCTTCCCGACGGAAACCAGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TGGGCCAGTTTGTCAAAACCGATCCa < 2:24542/148‑1 (MQ=255) gAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGGCAGTTTGTCAAAACCGATccc > 2:3501324/1‑147 (MQ=255) aaTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCAt < 1:1455993/148‑1 (MQ=255) aTCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCAtt < 1:2094250/148‑1 (MQ=255) ctctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTGAAAGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑GTGGCCAGTTTGTCAAAAACGATCCATTGa > 2:2533380/1‑148 (MQ=255) tctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTGAATTTTGTTCGGAGGGGAGCGCGGGCTGTGACCCGCGGGTTGGAGTGGGTTTGGCCGGTTT‑TGAAAAACCATCCaattac > 1:1343165/1‑143 (MQ=255) ctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCCATGTTGTTCGGGGGGCAGCTCTGGCTTTCACCGGCGTGTTGGAGTGCG‑TTGGGCCGTTTGTCAAAACCGATCCCTTGGCg > 2:3309024/1‑148 (MQ=255) ctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCCATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTGTGTCAAAAACCATCCATTGACg > 2:3308986/1‑148 (MQ=255) ctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATTTTTTACGGCGGGAAGCTCGGGCTTTCAACGGCGTTTTGCAGTGCG‑GTTGGCAGTTTTTGAAAACCCATCCAATTACg > 1:1169786/1‑148 (MQ=255) aTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATc < 1:2235430/148‑1 (MQ=255) tCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTCAAAGTTTTTCGGAGGGTAGCTCTGGGGTTAACCGGCGGTTTTGGGTGCG‑GGGGGCCGGTTGTGAAAAACCATCCCTTGACGCAtaa > 1:1036018/1‑146 (MQ=255) tCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATTTTTTACGGCGGGAACCTCTGGCTTTCACCGGGGTGTTGAAGTGCT‑GTGGCCACTTTGTCAAAACCACTACATTGAAGcctgg > 2:553849/1‑144 (MQ=255) tCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCa < 2:109724/148‑1 (MQ=255) cTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATTTTGTTCGGGGGGAAGCTCTGGCTTTCAACGGCGTTTTGGAGTGGG‑TTGGGCCGTTTGTGAAAAACGATCCATTGTCGCCTCAg > 1:3496525/1‑148 (MQ=255) cTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAg < 1:2326366/148‑1 (MQ=255) cTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTggg < 1:1704492/148‑1 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTgggg < 2:1667756/148‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 1:1091841/148‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 1:2869843/148‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 1:2799240/148‑1 (MQ=255) aCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGAt < 1:1017114/148‑1 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaa < 1:3564246/148‑1 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaa < 1:1919373/148‑1 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATaa < 1:1095789/148‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAAt < 1:858748/148‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAAt < 2:526210/148‑1 (MQ=255) cTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGaa < 2:234160/148‑1 (MQ=255) tGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTGAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTTCAGTGCG‑TTGGCCAGTTTGTCAAAAACGATACAATGAAGCATCAGTGGGGCTAAATAGaac > 2:1853636/1‑147 (MQ=255) tGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAg < 1:392644/148‑1 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGt < 1:2044214/148‑1 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGtt < 2:952114/148‑1 (MQ=255) gcgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACg < 2:1608547/148‑1 (MQ=255) gcgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACg < 2:1543704/148‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATTTTGTTAGGCGGGAAGCTCTGGCTTTCACCCGCGTTTTTGAGTGCG‑TTTGGCAGTTTGTAAAAAACCATACATTGAACCATCAGTGGGGGTAAAAAGAAGTTAAGCaa > 2:1247208/1‑147 (MQ=255) aaGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATa < 1:596295/148‑1 (MQ=255) aGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAg < 2:1063391/148‑1 (MQ=255) aGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAg < 1:1652779/148‑1 (MQ=255) gggTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTAAGGAGGGAAGCTCTGGGTTTAACCGGCGGTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCCAACCATTGACGCAACACTGGGGGTAAATCGAAGTTACGCATAGt > 2:102122/1‑148 (MQ=255) tAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCAt < 2:182983/148‑1 (MQ=255) tGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTtc < 2:2415538/148‑1 (MQ=255) tGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTtc < 2:2706354/148‑1 (MQ=255) gCGGTAGTGGTTATCGTCGCTTTTCTCAATGGTGTTCTGAGGGAAGCTCTGTCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCGAGTTTGTCAAAACCGATCCATTGACGCATAAGTGGGGATAAATCGAAGTTACGCATAGTCATTtct < 1:1252835/148‑1 (MQ=255) ggTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTcc < 2:2484910/148‑1 (MQ=255) ggTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTcc < 2:1751673/148‑1 (MQ=255) tAGTGGTTATCGTCGCTTTTCTCAAAGTTGTACGGAGGGAAGCTCTTGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTGAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTAAGCATAGTAATTTATccgt > 2:2926949/1‑146 (MQ=255) gTGGTTATCGTCGCTTTTATCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCCTCAGTGGGGATAAAACGAAGTTACGCATATTCATTTCTCCTTCt > 2:2898632/1‑148 (MQ=255) tGGTTATCGTCGCTTTTCTCAATGTTTTAAGGAGGGAAGCTCTGGCTTTAAACGGCGGTTTTCAGTTCG‑TTGGCCCGTTTGTCAAAAACCATACATTTAAGCATAAGTGGGGATAAATAGTATTTAAGCAAAGTCATTTATGCTTCTa > 2:1188648/1‑148 (MQ=255) ttATCGTCGCTTTTCTCTATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaaga < 1:1878216/148‑1 (MQ=255) ttATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaaga < 1:3257353/148‑1 (MQ=255) aTCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTaagaag < 2:3092707/148‑1 (MQ=255) tcgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGc < 1:862788/148‑1 (MQ=255) cTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaa > 1:1712306/1‑148 (MQ=255) ttttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑CTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaag < 1:1825252/148‑1 (MQ=255) tttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaagt < 2:509012/148‑1 (MQ=255) tctcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTATCCTTCTAAGAAGCGAGTAAGTAc > 2:3286062/1‑148 (MQ=255) ctcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTAcc < 2:3130530/148‑1 (MQ=255) ctcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTAcc < 2:3286433/148‑1 (MQ=255) tcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGTCGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCt > 1:2108692/1‑148 (MQ=255) tcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCt > 2:1791921/1‑148 (MQ=255) aTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCa > 2:2214877/1‑148 (MQ=255) aTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCa < 2:1239264/148‑1 (MQ=255) tgttgtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaa < 2:1591059/148‑1 (MQ=255) tgttgtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaa > 1:1191861/1‑148 (MQ=255) tgttgtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaa > 1:1191758/1‑148 (MQ=255) gttgtACGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaaa > 2:1337212/1‑148 (MQ=255) aCGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGa < 1:2926949/148‑1 (MQ=255) aCGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGa < 1:3556791/148‑1 (MQ=255) aCGGAGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGa < 2:110373/148‑1 (MQ=255) | TTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGCGTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGATCCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGA > CP009273/3860015‑3860302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |