Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 4,520,701 | G→T | 100% | G256G (GGC→GGA) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 4,520,701 | 0 | G | T | 98.5% | 646.1 / 0.7 | 202 | G256G (GGC→GGA) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
Reads supporting (aligned to +/- strand): ref base G (2/1); new base T (96/103); total (98/104) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.12e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 202 total aligned reads displayed.
CTGTTATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACGCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTACCGA > CP009273/4520556‑4520844 | cTGTTATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTcc < 2:2683547/148‑1 (MQ=255) cTGTTATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTcc > 2:1053170/1‑148 (MQ=255) tGTTATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTccc < 1:1227627/148‑1 (MQ=255) ttATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTg > 2:771330/1‑148 (MQ=255) ttATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTg > 2:771299/1‑148 (MQ=255) ttATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTg < 1:753663/148‑1 (MQ=255) aTCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGAt < 1:135560/148‑1 (MQ=255) aCGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTaa < 1:1981398/148‑1 (MQ=255) gCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATc < 2:3560461/148‑1 (MQ=255) gAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGAc < 2:3516548/148‑1 (MQ=255) gAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGAc < 1:810240/148‑1 (MQ=255) gCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCt < 1:29788/148‑1 (MQ=255) aCTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCgg < 2:2849310/148‑1 (MQ=255) ttCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGaa < 1:2775497/148‑1 (MQ=255) ttCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGaa < 1:671000/148‑1 (MQ=255) cACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCgtgt < 1:3336953/148‑1 (MQ=255) gAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATc < 2:1979582/148‑1 (MQ=255) gAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATc > 2:2071888/1‑148 (MQ=255) gAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATc > 2:830538/1‑148 (MQ=255) gAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATc > 1:1280591/1‑148 (MQ=255) aaTGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCa < 1:2211661/148‑1 (MQ=255) gttgtGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAggg < 1:1465622/148‑1 (MQ=255) ttgtGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAgggg > 2:1900336/1‑148 (MQ=255) tgtgTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGgt > 2:1499728/1‑148 (MQ=255) tCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTcac > 2:1371779/1‑148 (MQ=255) tCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTcac < 1:1534332/148‑1 (MQ=255) agagCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGCCCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATACTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCacact > 1:3463495/1‑147 (MQ=255) gagCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCTGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGa < 2:2263136/148‑1 (MQ=255) gagCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGa > 1:3311913/1‑148 (MQ=255) gagCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGa > 1:2545953/1‑148 (MQ=255) gagCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGa > 1:2546235/1‑148 (MQ=255) gagCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGa > 1:2660563/1‑148 (MQ=255) agCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGAt > 2:2479606/1‑148 (MQ=255) agCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGAt < 1:3522986/148‑1 (MQ=255) agCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGAt > 2:3478156/1‑148 (MQ=255) agCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATACTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGAt > 1:2251641/1‑148 (MQ=255) gTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAg < 2:3184337/148‑1 (MQ=255) tCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGt > 2:3401646/1‑148 (MQ=255) tCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGt > 1:2255305/1‑148 (MQ=255) cTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTg < 2:2635409/148‑1 (MQ=255) cTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTg < 2:1682518/148‑1 (MQ=255) cTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTg < 1:2463431/148‑1 (MQ=255) cTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACGCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTg < 1:50916/148‑1 (MQ=255) cTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGGTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTg < 1:3419392/148‑1 (MQ=255) gTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGat < 1:2888056/148‑1 (MQ=255) ttCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGata > 2:1066921/1‑148 (MQ=255) aaCATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCaa < 1:407695/148‑1 (MQ=255) tCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATAcc > 1:1120430/1‑148 (MQ=255) ccGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCa > 2:2886061/1‑148 (MQ=255) ccGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCa > 2:2381224/1‑148 (MQ=255) ccGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACGCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCa > 1:1787937/1‑148 (MQ=255) gTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAAt < 1:1495258/148‑1 (MQ=255) tATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATc > 2:1983861/1‑148 (MQ=255) aTCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCg > 1:2628529/1‑148 (MQ=255) cAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGcc > 1:2662710/1‑148 (MQ=255) cGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCcaggt > 1:161995/1‑148 (MQ=255) ggaggCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATa > 1:1530172/1‑132 (MQ=255) gaggCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCcaggtcagg < 1:3068096/148‑1 (MQ=255) gCGTGATTAATCCGGCCAGCGTTCCCCGAACATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGttt > 2:2178548/1‑148 (MQ=255) gCGTGATTAATCCGGCCAGCGTTCCCCGAACATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGGCAGGttt > 2:2158714/1‑148 (MQ=255) tGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTac < 1:3478156/148‑1 (MQ=255) gATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTaca > 1:2494734/1‑148 (MQ=255) gATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTaca < 1:55900/148‑1 (MQ=255) aTTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTacac < 1:2000995/148‑1 (MQ=255) ccGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTa < 1:2940449/148‑1 (MQ=255) cGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTaa < 2:212757/148‑1 (MQ=255) ggCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAAt < 1:2079620/148‑1 (MQ=255) gCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATa < 2:492056/148‑1 (MQ=255) cAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATAct > 1:2349571/1‑147 (MQ=255) cAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACg < 2:73058/148‑1 (MQ=255) cgCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTAACACGGCGTAATACgg > 1:2846583/2‑148 (MQ=255) cGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGa > 1:2317519/1‑148 (MQ=255) ggtCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGaa < 2:245021/146‑1 (MQ=255) gTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGaa < 2:3035950/148‑1 (MQ=255) ttCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAAc > 2:1834689/1‑148 (MQ=255) tCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACa < 2:1934064/148‑1 (MQ=255) tCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACa > 1:2615059/1‑148 (MQ=255) ccccGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACaa < 1:2578062/148‑1 (MQ=255) cccGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGACCAAt > 2:1239872/1‑148 (MQ=255) cccGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAAt > 2:1240349/1‑148 (MQ=255) cccGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAAt < 1:2467017/148‑1 (MQ=255) ccGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATg > 2:1609393/1‑148 (MQ=255) ccGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATg < 2:1767930/148‑1 (MQ=255) cGACCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGc < 1:2292783/148‑1 (MQ=255) aCCATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCcg > 1:1603774/1‑148 (MQ=255) ccATGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAAGTCAGGTTTTACACGGCGTAATACGGGAACAATGCcgc > 1:1953712/1‑148 (MQ=255) tGGTAGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGa > 1:2683116/1‑148 (MQ=255) aGTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATAtt > 2:2081881/1‑148 (MQ=255) gTTCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTa < 2:404506/148‑1 (MQ=255) tCAGGCAGGTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTaaa < 2:3126662/148‑1 (MQ=255) aggcaggTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAAtt < 1:2126481/148‑1 (MQ=255) caggTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAAttctt < 1:2407549/148‑1 (MQ=255) caggTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAAttctt < 1:1900336/148‑1 (MQ=255) ggTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTcc > 2:1064403/1‑148 (MQ=255) ggTGATCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTcc > 2:661913/1‑148 (MQ=255) aTCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTa > 1:1946408/1‑148 (MQ=255) tCCCAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTAc > 1:3244972/1‑148 (MQ=255) cAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCTAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTACCGa > 1:2758117/1‑148 (MQ=255) cAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCTAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTACCGa > 1:180942/1‑148 (MQ=255) cAACTCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCTAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTACCGa > 1:1983424/1‑148 (MQ=255) | CTGTTATCACGCCGGGAGCCACTTCTCGCTGCACCGGAATGTTGTGTTCAAGAGCCGTCTGTTCCAACATCCGTATCAGGCGAGGAGGCGTGATTAATCCGGCCAGCGTTCCCCGACCATGGTAGTTCAGGCAGGTGATCCCAACGCCCTGATTAATCCTGACCTCGGAATAATCGTGTAAATCAGGGGTGTCACACGATGGAGTGATATCAATACCAATCGCCAGGTCAGGTTTTACACGGCGTAATACGGGAACAATGCCGCGGATATTAAATTCTTCCTGTACCGA > CP009273/4520556‑4520844 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |