Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 4,571,233 | G→A | 100% | S16F (TCT→TTT) | hsdS ← | specificity determinant for hsdM and hsdR |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 4,571,233 | 0 | G | A | 98.5% | 650.4 / ‑0.4 | 199 | S16F (TCT→TTT) | hsdS | specificity determinant for hsdM and hsdR |
Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (110/86); total (112/87) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 199 total aligned reads displayed.
TTTAGGAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAGATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAGCGCATCCAGTTCAGACAG > CP009273/4571088‑4571377 | tttAGGAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAAt > 1:1078576/1‑148 (MQ=255) tttAGGAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAAt < 2:1652138/148‑1 (MQ=255) ttAGGAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATa < 1:91792/148‑1 (MQ=255) ggAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTg < 1:2298390/148‑1 (MQ=255) gAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTgg < 1:847826/148‑1 (MQ=255) gAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTgg > 1:2403547/1‑148 (MQ=255) cAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGc > 1:206951/1‑148 (MQ=255) ccAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAac < 2:2151149/148‑1 (MQ=255) ccAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAac > 1:1915632/1‑148 (MQ=255) cAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAacc < 2:2781145/148‑1 (MQ=255) gTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAacccac > 1:3171348/1‑148 (MQ=255) gTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAacccac > 2:3118389/1‑148 (MQ=255) tCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAacccacc > 2:1269564/1‑148 (MQ=255) tCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAacccacc > 2:2449598/1‑148 (MQ=255) gtagtaTCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCt < 2:862654/148‑1 (MQ=255) gtagtaTCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCt < 2:1065530/148‑1 (MQ=255) agtaTCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTcc > 2:3158112/1‑148 (MQ=255) gtaTCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCg < 2:191039/148‑1 (MQ=255) taTCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCgg > 2:1759642/1‑148 (MQ=255) cAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCaa < 2:926398/148‑1 (MQ=255) cAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCaa < 1:1625745/148‑1 (MQ=255) cAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCaa > 2:2803195/1‑148 (MQ=255) cAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGAAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCaa < 1:3294006/148‑1 (MQ=255) cTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTc < 2:461962/148‑1 (MQ=255) ttGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTcc < 2:2489658/148‑1 (MQ=255) tCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACt > 2:3428801/1‑148 (MQ=255) tGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCa < 1:3118389/148‑1 (MQ=255) atatTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTc < 2:1789345/148‑1 (MQ=255) atatTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTc < 1:2777704/148‑1 (MQ=255) atatTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTc < 1:290289/148‑1 (MQ=255) tatTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTcc > 1:2586505/1‑148 (MQ=255) tGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCCCTCATTCCTTc > 1:2362419/1‑148 (MQ=255) tGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTc < 1:495144/148‑1 (MQ=255) ttCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCAc > 2:1088943/1‑148 (MQ=255) tCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCAcc > 2:2798898/1‑148 (MQ=255) cGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCAccc > 1:2540669/1‑148 (MQ=255) cGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCAccc > 1:2539824/1‑148 (MQ=255) cGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAAATTCCCCGCACTCATTCCTTCAccc > 1:2275608/1‑148 (MQ=255) cACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCCCCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCcca > 2:1499111/1‑148 (MQ=255) cACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCcca > 2:518102/1‑148 (MQ=255) cACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCcca > 2:3270019/1‑148 (MQ=255) aCGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCccac < 2:3383419/148‑1 (MQ=255) ggATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCccacca < 1:538275/148‑1 (MQ=255) gATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCaa < 1:948902/148‑1 (MQ=255) aaGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACg > 2:668730/1‑148 (MQ=255) agagGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGc > 1:3381828/1‑148 (MQ=255) gagGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGct > 1:1390931/1‑148 (MQ=255) gCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTACCCGCACTCATTCCTTCACCCCACCAAACGcttct > 2:404926/1‑148 (MQ=255) cAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGcttctt < 1:1399342/148‑1 (MQ=255) aataatCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTcc > 2:2967058/1‑148 (MQ=255) aataatCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTcc < 2:95800/148‑1 (MQ=255) aataatCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTcc < 1:1079978/148‑1 (MQ=255) aatCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACCCTTCTTCCAGc > 2:3151209/1‑148 (MQ=255) aatCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCAGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGc > 2:161773/1‑148 (MQ=255) atcatcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCa < 2:675667/148‑1 (MQ=255) tcatcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCaa < 1:139840/148‑1 (MQ=255) catcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCCCTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAAc > 1:1659177/1‑148 (MQ=255) catcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAAc > 2:2717233/1‑148 (MQ=255) catcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAAc > 2:2586631/1‑148 (MQ=255) catcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCAATCCTTCACCCCACCAAACGCTTCTTCCAGCAAc > 2:2584794/1‑148 (MQ=255) tcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAGATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTg > 2:2308387/1‑148 (MQ=255) tcTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAGATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTg > 2:2422470/1‑148 (MQ=255) ttAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTACCCGCAATCATTCCTTCACCCCACCAAACCCTTCATCCAGCAAATGACGc > 1:1702336/1‑148 (MQ=255) tAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCaa > 2:2407860/1‑148 (MQ=255) tAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTATTCCACCAACTGACGCTGcca > 1:621283/1‑146 (MQ=255) aaTTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCaaa < 2:2007829/148‑1 (MQ=255) aaTTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATATCCCCGCACTCATTCCTTCAACCCACCAAACGCATCTTCCAGCAACTGACGCTGCaaa > 2:588249/1‑148 (MQ=255) aTTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTGCATCCCCCCACCAAAAGCTTCTTCCAGCAACTGACGCTGCAAAt > 1:3182215/1‑148 (MQ=255) aTTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAAt > 1:3181574/1‑148 (MQ=255) tttATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATc < 1:2453433/148‑1 (MQ=255) aTTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGc > 1:2729234/1‑148 (MQ=255) ttGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCCAAAGCTTCTTCCAGCAACTGACGCTGCAAATCGGcc > 1:3318593/1‑148 (MQ=255) ttGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGcc < 2:330499/148‑1 (MQ=255) ttGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCGTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGcc > 1:350366/1‑148 (MQ=255) tGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCCTTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCt > 2:22453/1‑148 (MQ=255) tGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCCAATCGGCCt > 2:23398/1‑148 (MQ=255) tGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACACCTCCGGCAATTTCACCGCAATCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCt > 1:721992/1‑148 (MQ=255) ccTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCa < 2:2524666/148‑1 (MQ=255) ccTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCa < 1:1498179/148‑1 (MQ=255) cTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCAt < 1:816092/148‑1 (MQ=255) gCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCAtcg > 2:1559122/1‑148 (MQ=255) gCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCAtcg < 1:433310/148‑1 (MQ=255) ttttttATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCCTTCCTTCACCCCACCAAACGCTTCTTCCAGCCACTGACGCGGGACATCGGCCTCGtcgctcg > 2:3540786/1‑148 (MQ=255) ttttATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGcc < 1:788416/148‑1 (MQ=255) ttttATACGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCAACCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGAAAATGACGCAGCAAAAACGCATCATCGCTCGcc > 2:3475345/1‑148 (MQ=255) tataCGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGccccc < 2:3171390/148‑1 (MQ=255) aCGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGt < 2:3484806/148‑1 (MQ=255) aCGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAAATTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGt > 2:1949539/1‑148 (MQ=255) cGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGtt < 1:3130481/148‑1 (MQ=255) cGTTACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGtt < 1:1354506/148‑1 (MQ=255) tACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCAc < 2:1670204/148‑1 (MQ=255) tACTCCTCGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCAc < 2:1112290/148‑1 (MQ=255) ctcctcGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCACCGGCAATTTGCCCGCACTCATTACATCACCCCACCCAACGCTTAATCCAGCAACAGACGCTGCAAATCGGCCTCATCGCACGCCCCCAGTTCACGc > 1:1780190/1‑148 (MQ=255) cctcGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCAt > 1:665933/1‑148 (MQ=255) cGGATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTGCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAg > 1:1566796/1‑148 (MQ=255) gATTAGAGTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCCCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAgcg > 2:356990/1‑148 (MQ=255) gTTGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAGCGCATCCAg < 1:3010199/148‑1 (MQ=255) ttGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAGCGCATCCAGt < 1:1898451/148‑1 (MQ=255) ttGTGACCGTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAGCGCATCCAGt > 2:899152/1‑148 (MQ=255) gTAAATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAGCGCATCCAGTTCAGACAg < 2:1571870/148‑1 (MQ=255) | TTTAGGAACAAAAACCAAGTCCGTAGTATCAAACTTGCCATTCTGAATATTGTTCGCACGGATAAGAGGCAAATAATCATCTTTTAGATAATTTATTGCCTGCTCTTTTTTATACGTTACTCCTCGGATTAGAGTTGTGACCGTAGATACTGGGGCGATAACCCACCCCTCCGGCAATTTCCCCGCACTCATTCCTTCACCCCACCAAACGCTTCTTCCAGCAACTGACGCTGCAAATCGGCCTCATCGCTCGCCCCCAGTTCACGCATCAGCGCATCCAGTTCAGACAG > CP009273/4571088‑4571377 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |