| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,386,008 | G→T | 100% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,386,008 | 0 | G | T | 98.9% | 866.1 / 3.2 | 279 | coding (103/921 nt) | ycjY | S9 homolog non‑peptidase family protein |
| Reads supporting (aligned to +/- strand): ref base G (1/1); major base T (105/169); minor base . (3/0); total (109/170) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 280 total aligned reads displayed.
AACTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGG > CP009273/1385863‑1386150 | aaCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTAt < 2:726972/148‑1 (MQ=255)aaCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTAt < 1:1684629/148‑1 (MQ=255) aCTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTtata < 2:1424574/148‑1 (MQ=255) gACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTg < 2:2331618/148‑1 (MQ=255) aCGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGa > 2:42547/1‑148 (MQ=255) gcgGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACg < 2:2117739/148‑1 (MQ=255) cTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGtt > 2:2924846/1‑148 (MQ=255) tCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGttt < 1:1793300/148‑1 (MQ=255) tCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGttt < 1:972512/148‑1 (MQ=255) cgccgcCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTtc < 2:1005188/148‑1 (MQ=255) gccgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTGTTTAACGCCCCCACCTGGGTGAGTT‑AACACAAATGCCTTATACTGACGGGTTtca > 2:2483181/1‑148 (MQ=255) gccgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTtca < 1:2871502/148‑1 (MQ=255) ccgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTtcat < 2:2665917/148‑1 (MQ=255) cgccACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAAATGCCTGATACTGACGGGTTtcatc > 2:1933013/1‑148 (MQ=255) cTTTCACCTTGATAAGATGCGTCATTAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAAtt < 2:357598/148‑1 (MQ=255) tttCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTATTTAACGCCCCCACCGGGGTGCGGT‑AACACAAATGCCATATAATGAAGGGTTTCATCAAAttt > 1:1419503/1‑148 (MQ=255) ttCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAAtttt > 2:3506050/1‑148 (MQ=255) ttCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAAtttt < 1:2566439/148‑1 (MQ=255) ccTTGATTAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTTTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAg < 2:1165422/148‑1 (MQ=255) tGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGa > 2:593675/1‑148 (MQ=255) gATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGaa < 2:3138656/148‑1 (MQ=255) tAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTGTTTAAAGCCCCCCCCGGGGTGTGAT‑AAAACAAGTGGCTTATAATGACGGGTTTCATCAAATTTTGGGGGGtaaa > 1:3544764/1‑147 (MQ=255) tAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAAt < 1:759339/148‑1 (MQ=255) tAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAAt < 1:1566449/148‑1 (MQ=255) aaGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGaaaaa > 2:296700/1‑146 (MQ=255) aGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAg > 2:2574642/1‑148 (MQ=255) aGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTATTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTACTCAAATTTTGGTGGGAAATat > 2:2843886/1‑147 (MQ=255) gATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAACGCCCCCCCCTGGGTGTGAT‑AACACAATTGCCTTATACTGGCGGGTGTCCTCAAATTTTGGAGGGAAATAGa > 2:1189453/1‑148 (MQ=255) aTGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTAAACCCCCCCCCCGGGGGGGATAAAAAAAATTGGGT‑ATACTGACGGGGTTGTTCAAAATTTGTTTGGGAATAGAt > 1:3305865/1‑148 (MQ=255) cGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCAc < 2:3529782/148‑1 (MQ=255) tCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTGTTTAAAGCCCCCCCCGGGGGGAGAT‑AACACAAATGCCTTATAATGACGGGTTTGATCAAATTTTTGTGGGAAATATATCACTg > 1:2666332/1‑148 (MQ=255) cATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTTTTGTTTAACGCCCCCCCCAGGGGGAGAT‑AACACAAATTGCTTATAATTAACGGTTTAATAAAAATTTTGTGGGAAAAATATAACTga > 1:2661384/1‑147 (MQ=255) tAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAg < 1:1322535/148‑1 (MQ=255) cAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACaa < 1:3146760/148‑1 (MQ=255) cAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACaa < 2:3253829/148‑1 (MQ=255) aaTAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACaaa < 1:3027752/148‑1 (MQ=255) aTAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTTAAGCCCCCACCAGGGTGAGAT‑AACACAATTGCCTTATAATGACCGGTTTCATAAAATTTTTGAGGGAAATAGATAACTGCAGACAAag > 2:3365827/1‑148 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAagag < 2:2462711/148‑1 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAagag < 2:1601044/148‑1 (MQ=255) aGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGGTGGTTAAAGCCCCCCCCCGGGGGTGAT‑AACACAAATTGCTTATAATTACGGGTTTGAAAAAAATTTTGTGGGGAATAGATAAAAGCAGACAAaaag > 1:482503/1‑148 (MQ=255) cAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGt < 1:2624936/148‑1 (MQ=255) tCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGa < 1:1540491/148‑1 (MQ=255) cccTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGat < 2:242503/148‑1 (MQ=255) cccTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAAAGCCCCCCCCCGGGGGTGAT‑AACACAAATGCCGTATAATGACGGGTTTAATCAAAATTTTGTGGGAAATAGATAAAAGCAGACAAAGAGATTGTTggtg > 1:3479444/1‑146 (MQ=255) cTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGatta < 2:1344170/148‑1 (MQ=255) tttCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGattatt < 2:2035339/148‑1 (MQ=255) tttCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGattatt < 1:2955534/148‑1 (MQ=255) ttCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTg < 2:682394/148‑1 (MQ=255) ttCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAAAGCCCCCCCCGGGGTGGGATAAAAAAAATTGCGT‑ATACTGACGGGTTTAATCAAATTTTGGTGGGAAATATATAAAAGCAGACAAACAGTTTGTTGGTTTATTg > 1:895402/1‑148 (MQ=255) cGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAAATTCCTTATAAAGACGGGTTTAATCAAATTTTGGAGGGAAATATATAACTGCAGACAAAGAGATGGTTGGATTATTTCTg > 2:1684789/1‑148 (MQ=255) cGCCAGTTTTTTGGAATAGGTTCCGGCCGTTTGTTATTTAACGCCACCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTg < 1:2083740/148‑1 (MQ=255) gCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGatt > 2:2056185/1‑140 (MQ=255) cAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTa < 2:451273/148‑1 (MQ=255) cAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAAAGCCCCCACCAGGGTGAGAT‑AACACAAATTCCTTATAATGACGGGTTTCATCAAAATTTTGAGGGAAATAGATAACAGCAGACAAAGAGATGGGTGGATTATTTCTGTTa > 2:1574557/1‑148 (MQ=255) cAGTTTTTTGGCATAGGTTCCGGCCGTGTGTTCTTTAAAGCCCCCACCAGGGTGAGAT‑AACACAAATTCCTTATAATGACGGGTTTCATCAAATTTTTGTGGGAAATAGATCACTGCCGACAAAGAGATGGTTGGGTTATTTCTGTTa > 2:1058059/1‑148 (MQ=255) aGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAg < 1:1207001/148‑1 (MQ=255) aGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAg < 1:1211066/148‑1 (MQ=255) gTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGt < 2:1858992/148‑1 (MQ=255) ttttttGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTg < 1:955371/148‑1 (MQ=255) ttttttGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTg < 1:1341642/148‑1 (MQ=255) tttttGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGa < 2:2292654/148‑1 (MQ=255) ttttGGCATAGGTTCCGGCCGTTTGTTCTTTAAAGCCCCCACCTGGGTGAGAT‑AACACAATTGCCGTATAATTACGGGTTTCATCAAATTTTGGAGGGAAATAGATAACTGCAGACAAAGAGATGGTTGGATTATTTCTGTTAGTGaa > 2:2380803/1‑148 (MQ=255) ggCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTg < 1:1021783/148‑1 (MQ=255) gCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGa < 1:308349/148‑1 (MQ=255) aTAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACt < 2:264386/148‑1 (MQ=255) tAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACtt < 2:1969995/148‑1 (MQ=255) aGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACttt < 1:1661396/148‑1 (MQ=255) ggTTCCGGCCGTTTGTTGTTTAACGCCCCCACCTGGGTGAGAT‑AAAAAAAATGCCTTATACTGACGGGGTTCATAAAATTTTGGATGGAAATAGATAAAAGCAGTCAAAGAGATGGTTGGTTTATTGCTGTTAGTGAAGCTGAATtta > 2:3439410/1‑148 (MQ=255) tCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTttatta < 2:959264/148‑1 (MQ=255) ccGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcat < 1:1004726/148‑1 (MQ=255) cGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcatc > 1:2567879/1‑148 (MQ=255) cGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcatc < 1:2454478/148‑1 (MQ=255) cGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcatc < 2:3221121/148‑1 (MQ=255) cGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcatc < 1:2771695/148‑1 (MQ=255) cGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATtcatc < 2:1447769/148‑1 (MQ=255) ttGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCAtt < 2:1097772/148‑1 (MQ=255) tCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGt > 2:3371986/1‑148 (MQ=255) ttAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTcc < 1:422743/148‑1 (MQ=255) ttAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTcc < 2:482503/148‑1 (MQ=255) ttAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTcc > 2:86227/1‑148 (MQ=255) tAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCt < 2:135386/148‑1 (MQ=255) tAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCt > 2:271119/1‑148 (MQ=255) aaCGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTc > 2:1495648/1‑148 (MQ=255) cGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCAt > 2:1230006/1‑148 (MQ=255) cACCTGGGTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGtt < 2:2223614/148‑1 (MQ=255) cACCTGGGTGAGAT‑AACACAAGTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGtt < 2:1686175/148‑1 (MQ=255) gcTGTGTGAGAT‑AACACTATTGCCTTATACTGTGGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGTTTTTTGGTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGt < 1:2154936/147‑1 (MQ=255) gggTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCgg > 2:2945809/1‑148 (MQ=255) gTGAGAT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGtt > 1:1989214/1‑148 (MQ=255) agaT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGt < 2:775270/148‑1 (MQ=255) agaT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGt < 1:1819429/148‑1 (MQ=255) aT‑AACACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGttt > 1:2266921/1‑148 (MQ=255) aaCACAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTa > 2:3122229/1‑148 (MQ=255) aaCACAATTGCCTTATACTGACGGGTTTAATCACATGTTGGAGGGAAATAGATCACTGAAGACAAAGAGATGGATGGATTATTGCTGTTAGTGAAGATGACTTTATTATTCATCATTACTTTAATCATGGAGTTGTCGGTTCGTTTTa > 2:2779405/1‑148 (MQ=255) acacAATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTaa > 1:1656617/1‑148 (MQ=255) acaATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACg < 1:2763567/148‑1 (MQ=255) caATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACgg < 2:1179915/148‑1 (MQ=255) caATTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACgg < 2:2681384/148‑1 (MQ=255) aTTGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGtt > 1:1067661/1‑148 (MQ=255) tGCCTTATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTgg > 2:3262666/1‑148 (MQ=255) | AACTGACGCGGCTCGCCGCCACTTTCACCTTGATAAGATGCGTCATAAGCAATAGTGACAAATCCCTTTTCCGCCAGTTTTTTGGCATAGGTTCCGGCCGTTTGTTCTTTAACGCCCCCACCTGGGTGAGAT‑AACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGG > CP009273/1385863‑1386150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |