Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,945,085 C→A 10.1% intergenic (‑306/‑4) aspS ← / → yecD aspartyl‑tRNA synthetase/isochorismatase family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,945,0850CA10.1% 664.4 / 34.3 198intergenic (‑306/‑4)aspS/yecDaspartyl‑tRNA synthetase/isochorismatase family protein
Reads supporting (aligned to +/- strand):  ref base C (83/95);  new base A (13/7);  total (96/102)
Fisher's exact test for biased strand distribution p-value = 1.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01

Only 100 of 206 total aligned reads displayed.

TACCACTTTATATCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTCGCGCCAGCGGT  >  CP009273/1944938‑1945232
                                                                                                                                                   |                                                                                                                                                   
tACCACTTTATATCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTc                                                                                                                                                     <  1:192895/148‑1 (MQ=255)
 aCCACTTTATATCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCa                                                                                                                                                    <  1:1027349/148‑1 (MQ=255)
      tttATATCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATg                                                                                                                                               <  1:2677560/148‑1 (MQ=255)
      tttATATCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATGTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATg                                                                                                                                               <  2:1816499/148‑1 (MQ=255)
         atatCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCtt                                                                                                                                            >  2:1453472/1‑148 (MQ=255)
         atatCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCtt                                                                                                                                            <  2:847159/148‑1 (MQ=255)
           atCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGa                                                                                                                                          <  1:992145/148‑1 (MQ=255)
            tCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGaa                                                                                                                                         <  2:2787119/148‑1 (MQ=255)
              gggCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGAGTTTGTTTTTTCAGGAGTCATTATGCTTGAACt                                                                                                                                       >  1:778235/1‑148 (MQ=255)
                gCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTa                                                                                                                                     <  1:3459605/148‑1 (MQ=255)
                    gAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGc                                                                                                                                 >  1:1101183/1‑148 (MQ=255)
                     aaaTCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCt                                                                                                                                >  1:442133/1‑148 (MQ=255)
                     aaaTCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCAGTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCt                                                                                                                                >  1:176316/1‑148 (MQ=255)
                        tCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTaaa                                                                                                                             >  2:151267/1‑148 (MQ=255)
                           gACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAAcc                                                                                                                          <  2:36820/148‑1 (MQ=255)
                           gACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAAcc                                                                                                                          >  1:808988/1‑148 (MQ=255)
                           gACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAAcc                                                                                                                          <  2:36695/148‑1 (MQ=255)
                            aCTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCa                                                                                                                         <  2:3138070/148‑1 (MQ=255)
                                      aGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCtggt                                                                                                               <  1:556713/148‑1 (MQ=255)
                                        tttGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCtggtgg                                                                                                             <  1:2044370/148‑1 (MQ=255)
                                        tttGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCtggtgg                                                                                                             >  2:3124369/1‑148 (MQ=255)
                                        tttGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTGGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCtggtgg                                                                                                             <  1:2173578/148‑1 (MQ=255)
                                         ttGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTggtggt                                                                                                            >  2:446190/1‑148 (MQ=255)
                                            cTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGAt                                                                                                         <  1:2284320/148‑1 (MQ=255)
                                            cTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGAt                                                                                                         <  1:2238503/148‑1 (MQ=255)
                                              ataAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTTGTGATCg                                                                                                       <  2:404996/148‑1 (MQ=255)
                                              ataAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCg                                                                                                       >  1:903845/1‑148 (MQ=255)
                                              ataAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCg                                                                                                       <  2:308229/148‑1 (MQ=255)
                                               taAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGa                                                                                                      >  1:528435/1‑148 (MQ=255)
                                               taAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGa                                                                                                      >  1:528620/1‑148 (MQ=255)
                                               taAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGa                                                                                                      <  1:466831/148‑1 (MQ=255)
                                                  aGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGAttt                                                                                                   <  2:2815655/148‑1 (MQ=255)
                                                  aGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGAttt                                                                                                   >  2:3130974/1‑148 (MQ=255)
                                                       ttGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACaag                                                                                              <  1:858480/148‑1 (MQ=255)
                                                           ccGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGAGTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAgg                                                                                          >  2:54881/1‑148 (MQ=255)
                                                               aCTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATc                                                                                      <  1:3036235/148‑1 (MQ=255)
                                                               aCTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATc                                                                                      >  1:1587106/1‑148 (MQ=255)
                                                                 tCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCtt                                                                                    >  2:1016135/1‑148 (MQ=255)
                                                                  cATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTa                                                                                   >  1:3285630/1‑148 (MQ=255)
                                                                  cATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTa                                                                                   <  1:3490390/148‑1 (MQ=255)
                                                                  cATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTa                                                                                   <  1:2690604/148‑1 (MQ=255)
                                                                   aTAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTAc                                                                                  >  2:2875433/1‑148 (MQ=255)
                                                                   aTAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTAc                                                                                  >  2:647765/1‑148 (MQ=255)
                                                                   aTAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTAc                                                                                  <  1:1976201/148‑1 (MQ=255)
                                                                    tAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTAcc                                                                                 >  1:1500523/1‑148 (MQ=255)
                                                                    tAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTAcc                                                                                 >  2:1882515/1‑148 (MQ=255)
                                                                     aaaaaTTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCt                                                                                >  1:2916906/1‑148 (MQ=255)
                                                                     aaaaaTTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCt                                                                                >  1:1925935/1‑148 (MQ=255)
                                                                     aaaaaTTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCt                                                                                >  2:332609/1‑148 (MQ=255)
                                                                       aaaTTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCttt                                                                              <  2:1234564/148‑1 (MQ=255)
                                                                          ttAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGc                                                                           <  2:2977762/148‑1 (MQ=255)
                                                                            aaCAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCg                                                                         >  2:1184584/1‑148 (MQ=255)
                                                                             aCAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCgg                                                                        >  2:2655908/1‑148 (MQ=255)
                                                                             aCAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCgg                                                                        >  1:2835885/1‑148 (MQ=255)
                                                                              cAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCggt                                                                       <  2:903845/148‑1 (MQ=255)
                                                                               aaaaTTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCggtg                                                                      >  1:1408973/1‑148 (MQ=255)
                                                                               aaaaTTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCggtg                                                                      >  1:1408612/1‑148 (MQ=255)
                                                                                 aaTTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCggtggt                                                                    <  2:2161423/148‑1 (MQ=255)
                                                                                 aaTTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCggtggt                                                                    <  2:2612314/148‑1 (MQ=255)
                                                                                     tGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCcac                                                                <  1:1333007/148‑1 (MQ=255)
                                                                                      gTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCcaca                                                               <  2:2036450/148‑1 (MQ=255)
                                                                                        cGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATa                                                             <  2:3520068/148‑1 (MQ=255)
                                                                                           tCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTg                                                          >  2:1262453/1‑148 (MQ=255)
                                                                                            ccGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGc                                                         <  1:169828/148‑1 (MQ=255)
                                                                                                cATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGAt                                                     <  1:850797/148‑1 (MQ=255)
                                                                                                 aTCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATg                                                    <  2:1574755/148‑1 (MQ=255)
                                                                                                 aTCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTAAGTATGCTTGAACTTAATGCTAAAACCACTGCGATGGTGGTGATCGATATACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACAAACTGCCGATg                                                    >  1:1066075/1‑148 (MQ=255)
                                                                                                  tCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGa                                                   >  1:2024434/1‑148 (MQ=255)
                                                                                                  tCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGa                                                   >  2:2715546/1‑148 (MQ=255)
                                                                                                     gCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGt                                                <  2:1876498/148‑1 (MQ=255)
                                                                                                     gCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGt                                                <  2:1143343/148‑1 (MQ=255)
                                                                                                        aaTCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGt                                             <  1:2733622/148‑1 (MQ=255)
                                                                                                         aTCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGtt                                            >  1:1723882/1‑148 (MQ=255)
                                                                                                         aTCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGtt                                            <  1:3124697/148‑1 (MQ=255)
                                                                                                         aTCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGtt                                            <  1:3124369/148‑1 (MQ=255)
                                                                                                         aTCGAATTAATGTGTGAGGCACGATTTTGTTTTTTCAGGATTCATTATGCTAGAACTTAATGCTAAAACCACAGCGCTGGTGGTGATCGATTTACAATAAGGCATCATACCTTTTGCCGTTGGTCCACATACTGCCGATGAGGTAGtt                                            >  1:819754/1‑148 (MQ=255)
                                                                                                          tCGCATTAAGGTGTGAGGCACGAGTTTGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGAGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACAGACTGCCGATGAGGTAGTTa                                           >  1:1672857/1‑148 (MQ=255)
                                                                                                            gCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAAt                                         >  2:3490117/1‑148 (MQ=255)
                                                                                                              aTTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATcg                                       >  1:480857/1‑148 (MQ=255)
                                                                                                              aTTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTAACTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATcg                                       >  2:2254302/1‑148 (MQ=255)
                                                                                                                tAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATcgcg                                     <  1:1590205/148‑1 (MQ=255)
                                                                                                                tAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATcgcg                                     >  1:2489731/1‑148 (MQ=255)
                                                                                                                    gtgtGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCgg                                 >  1:259990/1‑148 (MQ=255)
                                                                                                                    gtgtGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCgg                                 >  1:2102342/1‑148 (MQ=255)
                                                                                                                    gtgtGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCgg                                 >  1:59981/1‑148 (MQ=255)
                                                                                                                      gtgAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCTATGAGGTAGTTAATCGCGCCGGGa                               >  1:2641856/1‑148 (MQ=255)
                                                                                                                       tgAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGaa                              >  2:1123456/1‑148 (MQ=255)
                                                                                                                        gAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCGGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAg                             <  2:778235/148‑1 (MQ=255)
                                                                                                                           gCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTg                          >  1:2624390/1‑148 (MQ=255)
                                                                                                                            cACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTgg                         >  2:388370/1‑148 (MQ=255)
                                                                                                                                 ttttGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGgcggcg                    >  1:2788124/1‑148 (MQ=255)
                                                                                                                                   ttGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGaa                  >  2:424771/1‑148 (MQ=255)
                                                                                                                                   ttGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGaa                  <  1:2852665/148‑1 (MQ=255)
                                                                                                                                   ttGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGaa                  <  1:446190/148‑1 (MQ=255)
                                                                                                                                    tGTTTTTTCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGaaa                 >  1:3539926/1‑148 (MQ=255)
                                                                                                                                         tttCAGGAGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTcg            <  1:501269/148‑1 (MQ=255)
                                                                                                                                              ggAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTCGCGCCa       >  2:2469013/1‑148 (MQ=255)
                                                                                                                                                aGTAATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTCGCGCCAGc     >  1:1443600/1‑148 (MQ=255)
                                                                                                                                                  tCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTCGCGCCAGCgg   >  2:2577478/1‑148 (MQ=255)
                                                                                                                                                   cATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTCGCGCCAGCGGt  <  1:326481/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TACCACTTTATATCGGGCCTGAAATCAGACTCTACGCCAGTTTGCTATAAAGGTGTTGCCCGAACTCATAAAAATTAACAAAATTTGTCGTTCCGCCATCGGCTAATCGCATTAAGGTGTGAGGCACGATTTTGTTTTTTCAGGAGTCATTATGCTTGAACTTAATGCTAAAACCACTGCGCTGGTGGTGATCGATTTACAAGAAGGCATCTTACCTTTTGCCGGTGGTCCACATACTGCCGATGAGGTAGTTAATCGCGCCGGGAAGCTGGCGGCGAAATTTCGCGCCAGCGGT  >  CP009273/1944938‑1945232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: