| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,222,656 | A→C | 30.0% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,222,656 | 0 | A | C | 30.0% | 62.2 / 5.4 | 69 | intergenic (+112/+261) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Reads supporting (aligned to +/- strand): ref base A (3/28); new base C (4/9); total (13/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCC > CP009273/2222509‑2222802 | cTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCa < 2:1645275/148‑1 (MQ=255) tggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAgggg < 1:3072047/148‑1 (MQ=255) ggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAggggg < 1:171843/148‑1 (MQ=255) gACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGggcgg < 1:2127139/148‑1 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGggcggc < 2:796675/148‑1 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCa < 1:1774754/148‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCaa < 1:143122/148‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCaa < 1:2558651/148‑1 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggggcg > 1:376907/1‑143 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggggca > 1:2173661/1‑143 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Gggggggggggggccg > 1:1305148/1‑143 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggggggcccg > 2:1509586/1‑143 (MQ=255) gTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑Tcg < 2:789400/148‑1 (MQ=255) tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCaacgc > 2:3085761/1‑145 (MQ=255) tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGCGGGGGGGccccaccc > 2:3085999/1‑142 (MQ=255) tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑Tcgc < 1:638204/148‑1 (MQ=255) aTTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGcccacgcc > 2:1076352/1‑142 (MQ=255) ttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCa < 1:887022/140‑1 (MQ=255) ttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCa > 2:887022/1‑140 (MQ=255) tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGcccc < 1:3156169/148‑1 (MQ=255) atatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCTGGGGGGGGCC‑A‑GAGGCGCCGcccccc > 2:2616421/1‑147 (MQ=255) ttttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGGCCA‑ACGCCCCCCCCCCCCGcc > 2:3510468/1‑147 (MQ=255) ttttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCa < 2:96169/148‑1 (MQ=255) ttttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCa < 2:1507388/148‑1 (MQ=255) aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGGGGGCGC‑CCCCCGCccccccccccccccccc > 1:769841/1‑147 (MQ=255) taattcatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGGGGGCCA‑ACCCCCCCCCCCCCCGCAACCCCCGGc > 2:586804/1‑148 (MQ=37) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCGTGTTGCGCTCCTGTCATGTGCATTGCTTAATATAATCAGTGGCGAATGGCGCGC‑GCTGGGGGGGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGc < 1:1762710/148‑1 (MQ=37) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCCGGGGGGGCCCAA‑AACCCGCC‑CCCCCCCCAcccccccgc > 2:586936/1‑144 (MQ=255) taattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGGGGGCCA‑ACGCCGCCCCCCCCAGCACCCCCCGGc > 2:2377490/1‑148 (MQ=37) aattaatGTCATCAGGTCAGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCTTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGct < 2:447818/148‑1 (MQ=255) ttaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCCGGGGGGGCCCA‑CCGCCCCCCCCCCCCCCCCCCCCCGGccca > 2:3194148/1‑145 (MQ=255) taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCCA‑AC‑CCGCCCCCCCCCCCCCCCCCCGGcccgg > 2:1181408/1‑144 (MQ=255) gAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCA‑AAGCCCCCCCCCCCGGCACCCCCCGGCGCTGGCCGAACaaaaacccg > 2:2269311/1‑143 (MQ=25) aaaaTAACGAGAATTTTTCTGTCTCTCATCGTGTTGCGGTCGTGTCTTGTGCTTTGCTTCATATAATCCGGGGCGCATGGAGCGC‑GCTGGGGGCGGCAAA‑GCGCCGCCGCCCCCTGCACCCCCGGGCTCGGG‑CGAACAAAATcgccgc < 2:2438892/148‑1 (MQ=18) tAACGATAATATTTCTGTCTCTCAGCGTGTTGCGCTCCGTTCTTGTGCATTGCTTCATATAATCACGGGCGCATGGAGCGC‑GCTGGGGGCGGCAAA‑TCGCCGCCGCCCCCGGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTgcg < 1:2943635/148‑1 (MQ=18) ctagaTTATTTCAGTCTCTCATCGTTTTGCGCTCCTGTCATGTGAATTGCTTCATATAATCACGGGCGCATGGAGCGC‑GCTGGGGGCGGCCAA‑CCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCgg < 1:550048/146‑1 (MQ=18) ttatTTCAGTCTCTCATCGTGTTGCGCTCGTGACTTGTGCATTGCTACAAATACTCACTGGCGCACGGAGCGC‑GCCGGGGGCGGCAAA‑GCGCCGCCCCCCCGGGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGccc < 2:1231759/147‑1 (MQ=17) atttttCGGTCTCTCATCCGGTGGCGCCCCTGTCTTGTGATTGGCTTCATATAACCCCGGGCGCCGGGCGCGC‑GCGGGGGGCGCCCAC‑GCGCCGCCGCCCCCTCCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGccc < 1:2880536/145‑1 (MQ=12) tCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc < 2:2498367/148‑1 (MQ=255) tctctcTTCCTGTTGCGCTCCTGTCTTGTGCTTTGCTTAATATAATCACGGGCGCACGGCGCGC‑GCGGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt < 1:2297444/148‑1 (MQ=18) tctctcATCCTGTGGCGCTCCTGTAATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt < 2:2157372/148‑1 (MQ=255) ttGTTGCGCTCCTGTCTTTTGATTTTATTAATATAAACCCTGGCGAATGGAGCGC‑GCTGGGGGGGGCAAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACgg < 1:1098902/147‑1 (MQ=14) gtGTTGCGCTCGTGTATGGTGCTTTGCTTCATATACTCCGTGGCGCATGGAGCGC‑GCGGGGGGCGGCAAA‑TCGCCGCCGCCCCCGGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACgg < 1:1101035/147‑1 (MQ=14) cTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACGGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACgg < 2:2976614/148‑1 (MQ=255) tCCTTTCATGTGATTTGTTTAATATAATCACGGGCCCATGGCGGGC‑GCCGGGGGCGCCAAT‑TCGCCGCCGCCCCCGGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 1:1089472/148‑1 (MQ=14) tCCTGTCATGTGCATTGCTTCATATAATCCCGGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 2:1127335/148‑1 (MQ=255) gccTGTCTTGTGATTTGCTACATATAATCCCGGGCGCACGGAGCGC‑GCGGGGGGCGCCCAA‑GCGCCGCCGCCCCGGGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 1:3126102/147‑1 (MQ=14) aTGTGATTTGCTTCATATAATCACTGGCGCAAGGCGCGC‑GCCGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:2061552/148‑1 (MQ=255) gtgCTTTGCTTCATATACCCCCGGGCGCACGGCGCGG‑GCGGGGGGCGCCCAA‑GCCCCCCCCCCCCCGCCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGa < 1:344157/148‑1 (MQ=11) tgattggCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:913748/142‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:1752164/148‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:208604/148‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:208479/148‑1 (MQ=255) tgCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:1575436/148‑1 (MQ=255) gctttGTTTCATATAACCACGGGCGCAAGGCGCGC‑GCGGGGGGCGGCCAA‑GCGCCGCCGCCCCCGGCACCCCCGGGCTCGGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 1:2539247/145‑1 (MQ=11) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 2:3033949/148‑1 (MQ=255) cATTGCTACATATAATCCCGGGCGCACGGAGCGC‑GCTGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 1:573539/148‑1 (MQ=14) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:376907/148‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:2173661/148‑1 (MQ=255) ttGCTTAATAAAACCACGGGCGCACGGCGCGC‑GCTGGGGGCGGCCAA‑TCGCCGCCGCCCCCTCCACCCCCGGGCTCGGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 1:2498014/148‑1 (MQ=11) cATATACTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATccc < 2:3197813/148‑1 (MQ=25) atccggggCGCAGGGCGCGG‑GC‑GGGGGGGGCCAACGCGCCGCGGCCCCGTCCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaa < 1:2984798/142‑1 (MQ=11) tcTGGCGCAGGGTGGGC‑GCGGGGGGCGGCCAC‑GCGCCGCCGCCCCCGGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg < 1:934588/147‑1 (MQ=11) gggCGCATGGCGCGC‑GCGGGGGGGGCCAAA‑GGGCCGCCCCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgcg < 1:2992508/147‑1 (MQ=11) gcgcAAGGAGCGC‑GCCGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGcc < 2:3068007/148‑1 (MQ=17) cgcATGGAGCGC‑GCAGGGGGCGGCCAA‑GCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 2:1231974/148‑1 (MQ=17) cgcAAGGAGCGC‑GCTGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 2:1231828/148‑1 (MQ=17) gcAAGGAGCGC‑GCCGGGGGCGGCCAA‑GCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:1559211/148‑1 (MQ=17) gcAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:1559105/148‑1 (MQ=32) aGGCGCGC‑GCCGGGGGCGCCCAA‑GCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAg < 1:325848/148‑1 (MQ=11) aGGAGCGC‑GCTGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAg < 1:1477968/148‑1 (MQ=17) ggAGCGC‑GCTGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 1:3526890/148‑1 (MQ=17) c‑gcCGGGGGGGGCCAA‑GCGCCGCCGCCCCCGCCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAt < 1:1277387/148‑1 (MQ=11) cAGGGGGCGGCCAC‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc < 2:68837/148‑1 (MQ=17) | CTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAA‑TCGCCGCCGCCCCCTGCACCCCCGGGCTCTGG‑CGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCC > CP009273/2222509‑2222802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |