| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,973,968 | T→A | 40.3% | G9G (GGA→GGT) | ygeA ← | Asp/Glu_racemase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,973,968 | 0 | T | A | 40.3% | 152.7 / 256.7 | 208 | G9G (GGA→GGT) | ygeA | Asp/Glu_racemase family protein |
| Reads supporting (aligned to +/- strand): ref base T (67/57); new base A (45/37); total (112/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Only 100 of 219 total aligned reads displayed.
ATCCCATTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGC > CP009273/2973821‑2974114 | tCCCATTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAAGGGTGGATTCCCAGCTCATtc > 1:2468019/1‑148 (MQ=255) aggccccGCGACGCTGGCACTCTTCTATTTCCTGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATtcctcc < 1:763256/145‑1 (MQ=255) aTTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATacctcc < 1:2439135/148‑1 (MQ=255) aTTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATacctcc > 1:1662530/1‑148 (MQ=255) aTTCCCCGCGACGCTGGCACTCTTATATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATtcctcc < 1:3363909/148‑1 (MQ=255) aTTCCCCGCGACGCTGGCACTCTTATATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATtcctcc < 1:2551261/148‑1 (MQ=255) tCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCa > 2:323398/1‑148 (MQ=255) ccccGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAg > 2:1247096/1‑148 (MQ=255) gACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAAcc < 2:1862336/148‑1 (MQ=255) gCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAAt < 1:1116801/148‑1 (MQ=255) tGGCACTCTTCTATTTAATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTg < 1:969738/148‑1 (MQ=255) aCTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGtttt < 2:867624/148‑1 (MQ=255) tcttctATTTCATTAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCa < 1:1314508/148‑1 (MQ=255) tcttctATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCa < 1:2955206/148‑1 (MQ=255) ttctATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCAtt < 1:3153667/148‑1 (MQ=255) tctTTTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTc < 1:2300985/148‑1 (MQ=255) tctATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTc < 1:490365/148‑1 (MQ=255) tctATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTc > 2:70885/1‑148 (MQ=255) ctATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTcc < 2:2620491/148‑1 (MQ=255) ctATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTcc > 2:56977/1‑148 (MQ=255) cATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCtctctc < 1:825737/148‑1 (MQ=255) aTGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTcc < 1:1815483/148‑1 (MQ=255) aTGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTcc < 2:155856/148‑1 (MQ=255) tGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCt < 1:3070064/148‑1 (MQ=255) tGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCt > 1:2805301/1‑148 (MQ=255) gAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTg < 1:1486855/148‑1 (MQ=255) aaaTCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGAt < 1:1751283/148‑1 (MQ=255) aaaTCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGAt < 1:349731/148‑1 (MQ=255) aaTCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCACACCAATTGTTTTCATTCCTCTCTCCTGAtg > 1:1928361/1‑148 (MQ=255) aaTCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGAtg > 2:3174330/1‑148 (MQ=255) aTCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGAtgt < 2:1473490/148‑1 (MQ=255) tCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGAtgtg < 2:259986/148‑1 (MQ=255) tCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTACTCTCTCCTGAtgtg > 2:1939699/1‑148 (MQ=255) aCGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATgtgtgt < 1:1419354/148‑1 (MQ=255) cGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGtt > 2:2463386/1‑148 (MQ=255) cGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGtt > 2:1962817/1‑148 (MQ=255) aTGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCg > 1:12667/1‑148 (MQ=255) tGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGc > 2:3291603/1‑148 (MQ=255) gTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGca < 2:1301597/148‑1 (MQ=255) tAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCTTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTACTCTCTCCTGATGTGTGTTACCGcaa > 1:649083/1‑148 (MQ=255) cagcaCTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGcaacaa > 2:2219782/1‑148 (MQ=255) cagcaCTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGcaacaa < 1:1241765/148‑1 (MQ=255) cagcaCTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGcaacaa < 2:3429438/148‑1 (MQ=255) caCTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGc > 1:1391545/1‑148 (MQ=255) ttGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGa < 1:3514275/148‑1 (MQ=255) cgcAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATa < 2:2462445/148‑1 (MQ=255) agagTGAAGCCCAACAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTTTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAgg < 1:2017945/148‑1 (MQ=255) tGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACg > 1:1195891/1‑148 (MQ=255) gAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACga > 1:1827502/1‑148 (MQ=255) aGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACgaga > 1:2887985/1‑148 (MQ=255) gCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCACACGATAGTAAGGAATGGTGGATTCCCAGCTGCTTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCGGATGTGTGGTACCGCCACAAGGCTGAATAAGGAACGAGAc > 1:2997542/1‑148 (MQ=255) gCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCACCAAGGCTGAATAAGGAACGAGAc > 2:1938644/1‑148 (MQ=255) cccACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGa < 1:1904435/133‑1 (MQ=255) cccACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGa > 2:1904435/1‑133 (MQ=255) ccaccaAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACaa < 2:1225716/148‑1 (MQ=255) caccaAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACaaa < 2:650241/148‑1 (MQ=255) caccaAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACaaa < 2:1325077/148‑1 (MQ=255) ccaAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACg > 2:1138075/1‑148 (MQ=255) ccGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCa > 2:306155/1‑148 (MQ=255) cGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCaa < 1:780123/148‑1 (MQ=255) cGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCaa < 2:2713116/148‑1 (MQ=255) cGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCaa < 2:3276914/148‑1 (MQ=255) tGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACgg > 2:3374112/1‑148 (MQ=255) tttAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGcc > 1:3221196/1‑148 (MQ=255) ttAATGACTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTATCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCa < 2:1623475/148‑1 (MQ=255) aTGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGt > 1:2418231/1‑148 (MQ=255) tGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTg > 1:1739133/1‑148 (MQ=255) tGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTg > 1:452700/1‑148 (MQ=255) ccTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGcc < 1:3174475/148‑1 (MQ=255) ttCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCa > 1:1043620/1‑148 (MQ=255) ttCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCa > 1:3562560/1‑148 (MQ=255) cATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAAt > 2:1092365/1‑148 (MQ=255) tttATCAAACGATTGTAAGTAATGGTGTATCCCCAGCACATACCTCCCACAAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCCCAACAAGGCTGAATAAGGAACGAGAAAAACGCCTCAACGGCCAAGTGCCCAAttt < 1:3291603/148‑3 (MQ=255) tttATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAAttt < 1:3485317/148‑3 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa > 1:3351451/1‑148 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa > 1:2298000/1‑148 (MQ=255) aTCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTa > 2:2587139/1‑148 (MQ=255) tCAACCGCTAGTAAGGACTGGTGGAGTCCCAGCTCATCCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCGCAACGGCCAAGTGCCCAATTTCTAt < 2:2921003/148‑1 (MQ=255) tCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTAt > 2:1387873/1‑148 (MQ=255) aaaCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTa > 2:1379594/1‑148 (MQ=255) aaCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTaa < 2:2806374/148‑1 (MQ=255) aTAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGGATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGaa > 1:779261/1‑148 (MQ=255) tAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGaaa > 2:900477/1‑148 (MQ=255) gTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGaaaaa > 1:21305/1‑148 (MQ=255) gTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATGTCTATTAACGaaaaa > 2:2843392/1‑148 (MQ=255) aaGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAg < 1:208028/148‑1 (MQ=255) ggAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAggg > 2:1502020/1‑148 (MQ=255) attggtggATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGcc < 1:1420892/146‑1 (MQ=255) aaTGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGcc < 1:593444/148‑1 (MQ=255) tggtggATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCgg > 2:304031/1‑148 (MQ=255) ggtggATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGa > 1:3482601/1‑148 (MQ=255) ggtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGa < 2:404166/148‑1 (MQ=255) gATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGACCGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTa > 1:857724/1‑148 (MQ=255) gATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTCTTAACGAAAAAAGGGCCGGATGTa > 1:3534642/1‑148 (MQ=255) ttCCCAGCTAAGTCCTCCCAGCAAACCAATTGTTTTTATTCCTCTCTCCTGTTGTGTGTTACCGCAACAAGGCTGAAAAAGGAACGACACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:3112604/148‑1 (MQ=255) tCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGACAAAAGGGCCGGATGTACAg > 2:1825558/1‑148 (MQ=255) tCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAg < 2:1719990/148‑1 (MQ=255) gCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCCCAACAAGGCTGAAAAAGCAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACAt < 1:2495171/148‑1 (MQ=255) cTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATc > 2:3120623/1‑148 (MQ=255) ttCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGc > 1:2830671/1‑148 (MQ=255) | ATCCCATTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGC > CP009273/2973821‑2974114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |