| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,988,355 | C→A | 100% | pseudogene (97/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,988,355 | 0 | C | A | 97.5% | 704.9 / 8.5 | 238 | pseudogene (97/633 nt) | ygeK | pseudogene; putative 2‑component transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (5/1); new base A (121/110); total (126/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic base substitution creates a homopolymer stretch. | |||||||||||
Only 100 of 238 total aligned reads displayed.
ATGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCAT > CP009273/2988212‑2988498 | atGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAAcc > 2:1027206/1‑148 (MQ=255)atGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAAcc > 1:830419/1‑148 (MQ=255) gAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTc > 1:3544360/1‑148 (MQ=255) gAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTc > 2:2041858/1‑148 (MQ=255) aGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCa > 2:3165260/1‑148 (MQ=255) gCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCat < 1:2465199/148‑1 (MQ=255) gCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCat < 1:2327139/148‑1 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa < 2:2289364/148‑1 (MQ=255) ctatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa > 1:107971/1‑148 (MQ=255) tatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaaa < 1:2574624/148‑1 (MQ=255) tatctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaaa < 1:787798/148‑1 (MQ=255) atctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAAt > 1:3121286/1‑148 (MQ=255) atctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAAt < 2:3264774/148‑1 (MQ=255) tctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATc > 2:1533802/1‑148 (MQ=255) ctTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATATCCCCCAAAAACCTCATATAAATCa > 1:2724351/1‑148 (MQ=255) ttATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAg < 2:2693369/148‑1 (MQ=255) tGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGAt < 2:1117817/148‑1 (MQ=255) gCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATa > 2:435767/1‑148 (MQ=255) cGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATATCCCCCAAAAACCTCATATAAATCAGTATaa > 2:1258387/1‑148 (MQ=255) cGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATaa < 2:197037/148‑1 (MQ=255) tttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGt > 2:1918383/1‑148 (MQ=255) ttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTc < 1:2124753/148‑1 (MQ=255) ttAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTc > 2:154090/1‑148 (MQ=255) aCCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCga > 1:2656763/1‑148 (MQ=255) ccATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa < 2:3267367/129‑1 (MQ=255) ccATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATaa > 1:3267367/1‑129 (MQ=255) ccATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCgaga > 1:1089459/1‑148 (MQ=255) cATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTATGCTGTAGATTTGTTACACTCAGCTATAGCTTTATTCAGATCTTTATAGCCCCAAAAAACCTCATATAAATCAGGATAATGTCCGAGaa < 2:2424301/148‑1 (MQ=255) aTTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGaaa > 2:3043637/1‑148 (MQ=255) tttACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATc > 1:2986308/1‑148 (MQ=255) tACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATCGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCa > 1:1223110/1‑148 (MQ=255) tACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCa < 1:1551675/148‑1 (MQ=255) aCGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCaa < 2:2628265/148‑1 (MQ=255) cGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAAt > 1:2028249/1‑148 (MQ=255) gTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTAt > 1:337129/1‑148 (MQ=255) ttCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATc < 1:1916513/148‑1 (MQ=255) ggCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCa > 2:585481/1‑148 (MQ=255) gCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCat < 1:3256183/148‑1 (MQ=255) cccccATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatc > 1:3358253/1‑148 (MQ=255) cccATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaa < 1:2389434/148‑1 (MQ=255) ccATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaat > 2:1047580/1‑148 (MQ=255) catcatTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTC‑TCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaatca < 1:2059151/148‑1 (MQ=255) atcatTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCatcaatca < 1:258245/148‑1 (MQ=255) catTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATa > 2:2375294/1‑148 (MQ=255) catTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATa > 2:465655/1‑148 (MQ=255) catTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATa < 2:3433075/148‑1 (MQ=255) atTCCACCTTCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATaa < 1:3081268/148‑1 (MQ=255) tCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAAc < 1:1456737/148‑1 (MQ=255) tCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGAGTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCCATCATAAAc > 2:2981919/1‑148 (MQ=255) cACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTATATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACgg < 1:399468/148‑1 (MQ=255) cACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACgg < 2:2089202/148‑1 (MQ=255) aCCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGgc > 1:2939390/1‑148 (MQ=255) ccTGAAAATTATCCTAAAATAAATTTTTAGGCTGTTTATTTTTTACACTCGGATATTTCTTTCTTCATATATTTATAGCCCCCAAAAACCTAATATAAATCAGTATAATGTCCGAGAAATCCAATTATCCCATAAATCATAAACGgct < 2:1461538/148‑1 (MQ=255) cTGCAAATTCTACTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTAAGATCTTTATAGCCCCAAAAAACCTCATATAAATCAGGATAATGTCCGATAAATCAAATTATCCCATCAATAATAAACGgctg < 2:3123129/148‑1 (MQ=255) aTTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATc < 2:3404242/148‑1 (MQ=255) aTTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATc < 2:2251941/148‑1 (MQ=255) aTTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATc > 2:147518/1‑148 (MQ=255) tcCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTTTTGCTTTCTTCAGATGTTTTTAGCCCACAAAAACCTCATTTAAATCAGTATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGaa < 2:1617431/148‑1 (MQ=255) cTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAAc > 2:1034793/1‑148 (MQ=255) tAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACt > 2:3508147/1‑148 (MQ=255) aaaaTAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTa > 2:2734145/1‑148 (MQ=255) aaaaTAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTa > 2:2325050/1‑148 (MQ=255) ataaataTTTAGGCTGTAGATTTTTTACACTCCGGTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCAAATTATCCAATCAATCATAAACGGCTGCTGATCTGAAACTACaa < 1:2043816/148‑1 (MQ=255) tatTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaatttta > 1:3357636/1‑148 (MQ=255) tatTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaatttta > 1:545168/1‑148 (MQ=255) tttAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaat > 2:624713/1‑148 (MQ=255) ttAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATATGAAACTACaattttaatt > 2:474245/1‑148 (MQ=255) tAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACaattttaattt > 1:250859/1‑148 (MQ=255) ggCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAAttttt > 2:1600607/1‑148 (MQ=255) gCTTTATATTTTTTACACTCCGATATAGCTTTCTTCAGATCTTTATAGCCCCAAAAAACCTCATATAAATCAGTATAATGTCCGAGAAATCAAATTATCCCATCAATCATACACGGCTGCTGATCTGAAACTACAATTTTAATTTTTc < 1:627966/148‑1 (MQ=255) gCTGTAGATTTGTTACACTCCGGTATAGCTTTCTTCAGATCTTTATCGCCCCAAAAAACCTCATATAAATAATGATAATGTCCGATAAATCCTATTATCCCTTCAATCATAATCGGCTGCTGATCTGAAACTACAATTTTAATTTTTc < 2:517484/148‑1 (MQ=255) gCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACTGCTGCTGATCTTAAACTACAATTTTAATTTTTc > 2:2169808/1‑148 (MQ=255) cTGTATTTTTGTTACACTCCGCTATAGCTTTCTTCATATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATACACGGCTGCTGATCTGAAACTACAATTTTAATTTTTcc < 2:603930/148‑1 (MQ=255) tttttttttGTTAAACTCCTATATTTGTTTTTTGAGATCTTTATAGCCCCAAAAAACCTAATATAAATCAGGATAATGTCCGATAAATCAATTTAGCCAATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTccc < 1:954748/142‑1 (MQ=255) tGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTccc > 2:2768731/1‑148 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCATATCTTTATAGCCCCCAAAAACCTCATATAAATCAGTATAATGTCCTATAAATCAAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCACat < 1:1242391/148‑1 (MQ=255) tAGATTTGTTACACTCCGATATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCat < 1:1183917/148‑1 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatat < 2:931621/148‑1 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatat > 1:3018268/1‑148 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATCGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGATAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatata < 1:1832406/148‑1 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCatatat < 2:1547470/148‑1 (MQ=255) ttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATAtt < 2:2939390/148‑1 (MQ=255) tggtaaccTCCGCTAGATCTTTCTTCAGATCTTTATAGCCCCCAAAACCCTCATATAAATCCGGAGAAGGTCCTAGAAATCCAATTATCACATCAATAATAAACGGCTGCTGATCTGAAACTACACTTTTAATTTTTCCCATCTATTc < 2:3121287/141‑1 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTc < 2:1275291/148‑1 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTg > 1:559731/1‑148 (MQ=255) ccGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAgt > 1:2480466/1‑148 (MQ=255) aGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATg > 2:2496759/1‑148 (MQ=255) aGCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATg > 2:1186625/1‑148 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGc < 1:3508147/148‑1 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGc > 2:1635908/1‑148 (MQ=255) tcttcAGATCTTTATAGCCCCCAAAAACCTCATATAAATAAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTa > 2:2125463/1‑148 (MQ=255) tcAGATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATACAATAATCACATCAATCATAAAATGCTGCTGATCTGAAACTACAATTTAAATTTTTACCATATATTAATCCTGAGTGTAAATCCTATAAct > 1:1925144/1‑147 (MQ=255) gATCTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcat > 1:231068/1‑148 (MQ=255) cTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATGATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattca > 1:1313553/1‑148 (MQ=255) cTTTATAGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGcattca > 1:3115282/1‑148 (MQ=255) aGCCCCCAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTtata < 1:237012/148‑1 (MQ=255) cccccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAat > 1:2381366/1‑148 (MQ=255) cccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatca > 1:1491465/1‑148 (MQ=255) cccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatca > 1:279146/1‑148 (MQ=255) ccAAAAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAatcat > 2:909810/1‑148 (MQ=255) | ATGAGCATCTATCTTATGCGATTTAACCCATTTTACGAGTTCGGCCCCCATCATTCCACCTGCAAATTCTCCTAAAATAAATATTTAGGCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCCCATCAATCATAAACGGCTGCTGATCTGAAACTACAATTTTAATTTTTCCCATATATTCATCCTGAGTGTAAATGCTTTAACGCATTCATTTATAATCAT > CP009273/2988212‑2988498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |