| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,136,423 | G→T | 7.5% | I367I (ATC→ATA) | hybB ← | putative hydrogenase 2 cytochrome b type component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,136,423 | 0 | G | T | 7.5% | 819.7 / 25.9 | 227 | I367I (ATC→ATA) | hybB | putative hydrogenase 2 cytochrome b type component |
| Reads supporting (aligned to +/- strand): ref base G (107/103); new base T (8/9); total (115/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
Only 100 of 228 total aligned reads displayed.
TTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTGCGCTCAG > CP009273/3136276‑3136569 | tttCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACg < 1:2033279/148‑1 (MQ=255) ttCGATTTAGCAAACGATTCGTAAATGACCCTAAATACGGGTTACCGGATCAATAGTAATACTCTGGCTCATGCTTTGCTCGCCTCATGAAGATTATGATAGTTTTGTTTTAAAGGAGGAAGTATAGGCAGTAGACGAATGAGTAAGa > 2:672082/1‑148 (MQ=255) tCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATTACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACTAt > 2:1588756/1‑148 (MQ=255) ttCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAg > 2:1697451/1‑148 (MQ=255) tCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAgc > 2:111259/1‑148 (MQ=255) cGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAgcg < 1:3371500/148‑1 (MQ=255) aaTCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCaa < 1:300404/148‑1 (MQ=255) aaTCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCaa < 2:2003806/148‑1 (MQ=255) tCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATTACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACTATGTAAGCGCAAAt > 1:2225348/1‑148 (MQ=255) tCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAAt < 2:3203944/148‑1 (MQ=255) aTGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAAtctc > 1:3505884/1‑148 (MQ=255) tGCGTAAATGCCCCTCAATACGGGTTACCGGGTCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCa > 1:1699059/1‑148 (MQ=255) tGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCa < 2:3162190/148‑1 (MQ=255) gCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa < 2:1943579/148‑1 (MQ=255) aaTGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGcc > 2:2078631/1‑148 (MQ=255) tGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATTACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACTATGTAAGCGCAAATCTCAATAGCcac > 2:1228590/1‑148 (MQ=255) tGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCcac > 2:2883869/1‑148 (MQ=255) ccTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCACATCTCAATAGCCACaaaa > 2:378936/1‑148 (MQ=255) tCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAAcc < 2:2522975/148‑1 (MQ=255) aaTACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATTACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACTATGTAAGCGCAAATCTCAATAGCCACAAAACCaa < 1:2833626/148‑1 (MQ=255) tACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATa > 2:1756501/1‑148 (MQ=255) tACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATa > 2:2283175/1‑148 (MQ=255) aCGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAg > 2:592318/1‑148 (MQ=255) cGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGa > 1:3034227/1‑148 (MQ=255) ggTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGaaa > 2:1853344/1‑148 (MQ=255) gTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCTGCAGTAGACGAATGATTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAAt > 1:1624084/1‑148 (MQ=255) gTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAAt > 1:2764625/1‑148 (MQ=255) aCCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCaa < 1:1453600/148‑1 (MQ=255) aCCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCaa < 2:2214803/148‑1 (MQ=255) ggATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAg > 1:441931/1‑148 (MQ=255) gATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGt > 1:312882/1‑148 (MQ=255) gATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGt < 2:3557490/148‑1 (MQ=255) aTCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGtt < 2:844246/148‑1 (MQ=255) cAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGttct > 1:210595/1‑148 (MQ=255) aTAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGttcttc > 2:2316630/1‑148 (MQ=255) tAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTcc < 1:2141018/148‑1 (MQ=255) aGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGTCGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTccc < 1:400743/148‑1 (MQ=255) gTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCa < 1:2634040/148‑1 (MQ=255) gTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCa < 1:1087431/148‑1 (MQ=255) gTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAAGCAACAGTTCTTCCCa > 1:3319530/1‑148 (MQ=255) tAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAg > 1:3414444/1‑148 (MQ=255) tAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCACAg > 2:2482174/1‑148 (MQ=255) aaTTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAgg > 1:1963413/1‑148 (MQ=255) tctcTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAAt < 1:2481289/122‑1 (MQ=255) tctGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCggg > 2:3092044/1‑148 (MQ=255) gCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTACGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGt > 2:257017/1‑148 (MQ=255) cTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTa > 2:2481347/1‑148 (MQ=255) tCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAg > 1:3534101/1‑148 (MQ=255) tGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCg < 2:3145415/148‑1 (MQ=255) tGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCg > 2:708081/1‑148 (MQ=255) gCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGt > 2:1453635/1‑148 (MQ=255) tttGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTaa < 2:1941971/148‑1 (MQ=255) ttGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAAc > 1:2638526/1‑148 (MQ=255) ttGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAAc > 1:2511039/1‑148 (MQ=255) gCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCACCAGTTCTTCCCAGGTCGGGAAGTAGGCGTAAccg < 2:1044715/148‑1 (MQ=255) cGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTACCAGGTCGGGAAGTAGGCGTAAccgccg > 2:3229889/1‑148 (MQ=255) cGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGa < 1:518405/148‑1 (MQ=255) cGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGa > 2:3436115/1‑148 (MQ=255) ttATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATg > 1:1602533/1‑148 (MQ=255) ttATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCACAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATg < 2:2453239/148‑1 (MQ=255) tATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGc < 2:2779431/148‑1 (MQ=255) aTGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGcc > 2:808333/1‑148 (MQ=255) tGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGcca > 1:106514/1‑148 (MQ=255) tGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGcca > 1:2685410/1‑148 (MQ=255) gATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGccac > 1:3353697/1‑148 (MQ=255) tttgttttAAAGGATGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGa > 1:2717778/1‑148 (MQ=255) ttgttttAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGaa > 1:1106091/1‑148 (MQ=255) ttgttttAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGaa < 1:2234792/148‑1 (MQ=255) gttttAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACTATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATa > 1:3728/1‑148 (MQ=255) ttttAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAg < 1:211447/148‑1 (MQ=255) ttAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACTATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGt < 2:2225862/148‑1 (MQ=255) ttAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGt > 1:1680236/1‑148 (MQ=255) tAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTc < 1:3202620/148‑1 (MQ=255) aaaGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATCGGTCa > 1:2884108/1‑148 (MQ=255) aggaAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGc > 2:1566503/1‑148 (MQ=255) aggaAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGc < 1:3111536/148‑1 (MQ=255) aaGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAg > 1:2295362/1‑148 (MQ=255) aaGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAg < 1:1020657/148‑1 (MQ=255) aaGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAg > 1:499363/1‑148 (MQ=255) aGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAgg < 1:708039/148‑1 (MQ=255) aGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAgg < 2:2329568/148‑1 (MQ=255) gTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGt > 1:1329309/1‑148 (MQ=255) gTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGt < 1:749885/148‑1 (MQ=255) aTCGGCAGTAGACGAATGATTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTg < 1:2320523/148‑1 (MQ=255) aTCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTg < 1:841106/148‑1 (MQ=255) aTCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTg < 2:3034227/148‑1 (MQ=255) cAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACaa < 2:2099351/148‑1 (MQ=255) cAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACaa > 1:1860706/1‑148 (MQ=255) cAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACaa < 2:272958/148‑1 (MQ=255) tAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCt > 1:2373783/1‑148 (MQ=255) aCGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAAc > 1:1798157/1‑148 (MQ=255) gAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAg < 1:2445167/148‑1 (MQ=255) aaTGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGt > 2:1479252/1‑148 (MQ=255) aTGAGTACTATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTg < 2:3399400/148‑1 (MQ=255) aTGAGTACTATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTg < 2:1631261/148‑1 (MQ=255) aTGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTg > 2:3127584/1‑148 (MQ=255) gAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTgcg > 1:477829/1‑148 (MQ=255) tACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTGCGCTc < 2:48788/148‑1 (MQ=255) aCGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTGCGCTCa > 2:1335215/1‑148 (MQ=255) aCGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTGCGCTCa < 1:2005405/148‑1 (MQ=255) | TTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAACAGTTCTTCCCAGGTCGGGAAGTAGGCGTAACCGCCGCCCGGGTTGAATGCCACCAGCGAATAGGTCAGACGCCAGGTTGCACAACCTAACAGTGCGCTCAG > CP009273/3136276‑3136569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |