| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,422 | G→T | 15.4% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,422 | 0 | G | T | 15.4% | 330.2 / 9.1 | 156 | I26I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (63/63); new base T (23/7); total (86/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.49e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 164 total aligned reads displayed.
CATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCA > CP009273/3439275‑3439569 | cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTg > 2:428870/1‑148 (MQ=255)cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTg < 2:2027687/148‑1 (MQ=255)cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTg < 2:2027712/148‑1 (MQ=255) ttGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGAt > 1:126208/1‑148 (MQ=255) ttGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGAt > 2:2933010/1‑148 (MQ=255) tGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATc < 2:1583006/148‑1 (MQ=255) tGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACAGTTGATc > 2:2419573/1‑148 (MQ=255) ttCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaa < 2:2066322/148‑1 (MQ=255) ttCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaa < 2:2066548/148‑1 (MQ=255) cagcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaata < 1:3137049/148‑1 (MQ=255) agcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaataa > 2:3428325/1‑148 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAc < 2:1493025/148‑1 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAc < 2:3265292/148‑1 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTTCCTTTGATAGTAATAAc > 1:2706582/1‑148 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTg > 1:1197826/1‑148 (MQ=255) ggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGa < 2:2430156/148‑1 (MQ=255) cACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTACCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGAcc < 2:3140294/148‑1 (MQ=255) cACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGAcc < 2:3138565/148‑1 (MQ=255) cgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTg < 2:856347/148‑1 (MQ=255) ccAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTa < 1:3293477/148‑1 (MQ=255) ccAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTa < 1:103552/148‑1 (MQ=255) ccTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTc < 1:570062/148‑1 (MQ=255) tgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACg > 2:1744895/1‑148 (MQ=255) tgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCG‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGc > 2:1744894/1‑148 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGc < 1:1057829/148‑1 (MQ=255) ccAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACTGACCGTTGATTTTTACGTCAACGCCg > 2:3083449/1‑148 (MQ=255) cAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTTCGTCAACGCCgg > 1:1412166/1‑148 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAgg < 2:763854/148‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaaca < 2:1820910/148‑1 (MQ=255) ggCGTAACCACCCCGCGGCCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaaca < 1:1930814/147‑1 (MQ=255) cGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaccaac > 2:2528307/1‑148 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGa < 2:1888793/148‑1 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTTATCGTAATAACCTGACCGTTGTTTTTTAAGTCAAAGCCGGCAGGaacaacca > 1:3033456/1‑146 (MQ=255) aaCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACTGACCGTTGATTTTTAAGTCAACGCCGGCAGGGACAACCAc > 1:37010/1‑148 (MQ=255) aaCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTGATCGTAATAAACTGAACGTTGATTTTTACGTAAAAGCCGGCCGGAACAACGAc > 2:2984105/1‑148 (MQ=255) aaCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCGTTTATAGTAATAAACATACCGTTTTTTTTTAAGTCAACCCCGGCCGGCACAACCAc > 1:3285198/1‑148 (MQ=255) ccATCACGCGGACCGAAGTTCAGTTTATTATCTGCATGTTTAACTTCAACAGCATCGTTGATAGTACGAGTAAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCg < 2:1499588/148‑1 (MQ=255) cATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCCGGAACAACGACCgg > 1:231654/1‑148 (MQ=255) aTCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGt > 2:1446957/1‑148 (MQ=255) cACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTTATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGc < 2:126208/148‑1 (MQ=255) cgcgGACCGAAGGTCTGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGATAGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCTTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑tt < 2:3036135/148‑1 (MQ=255) cgcgGACCGAAGGTCTGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑tt < 2:3036119/148‑1 (MQ=255) gcgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATAGTAAAAACCTGACCGATGATTTTTACGTCAACGCCGGCAGGCACAACGACCGGTGC‑tgt > 2:3197084/1‑146 (MQ=255) aCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTTTCGTAATAACCAGACCGTTGATTTTTACGTCAAAGCCGGCAGGAACAACCACCGGTGC‑TTTAGCa > 1:2183001/1‑148 (MQ=255) aCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCa > 2:2112505/1‑148 (MQ=255) cGACGGTCTGGTTTTTATCTGCATGTTTAACTTCACCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAac < 1:272827/148‑1 (MQ=255) aaGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGCCCGTTGATTTTTAAGTCAACCCCGGCAGGAACAACGACCGGTGC‑TTTAGCAacac > 1:462860/1‑148 (MQ=255) gttCAGGTTTTTATCTGCTTGTTTAACTTCAACAGAATCGTTGATAGTACGAGTATGCTCGCCGTTTTTACATTTTATCGTAATAACCTGACCTTTTATTTTTACGTCAACGCGGGCAGGAACAACGACCGGTGC‑TTTAGCAACACga < 1:2360652/146‑1 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCCACAGCATCGTTGAGAGTACGCGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACga < 2:2046395/148‑1 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATAGTAATAACCGGACCGTTGATTTTTACGTCAACGCCGGCCGGAACAACGACCGGTGC‑TTTAGCAACACga > 1:2305516/1‑148 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTTTCCGTTGATTTTTACGTCAACGCCGGCAGGAACAACCACCCGTGC‑TTTAGCAACACga > 1:3227594/1‑148 (MQ=255) cAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTTCCTTTGTTCGTTATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑GTTAGCAACACGAGAc > 1:1492777/1‑148 (MQ=255) ggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACAtt > 2:2916161/1‑148 (MQ=255) gTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACAttt < 2:1242576/148‑1 (MQ=255) gTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACAttt > 2:482912/1‑148 (MQ=255) attatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTTTCGTAATAAACGGACCGTTTTTTTTTAAGTGAAACCCGGCAGGTACAAACACCGGTGC‑TTTTTCAACACCACACAatttt > 1:337613/1‑148 (MQ=255) ttatCTGCATGTTTAACTTCAACAGCATCGTTGAGTGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACAtttttt < 2:2978294/148‑1 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTtcc > 2:831143/1‑148 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTATTATCGTAATAACAAGACCGTTTAATTTTAAGTCAACCACCCCATGAAAAACCCCCCGTTCGTTTTGC‑ACACCAGACAttttttac > 1:1482042/1‑146 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTTAGAGTACGAGTCAGCTCGCCTTTTTTACCTTTTATCTTAATAACCTGACCTTTTATTTTTACGTCACCGCCGGCAGGAACCACGACCGGTGC‑TTTAGCAACACGAGACATTTTTtcct < 1:182846/148‑1 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCCGCAGGAACAACCACCGGTGC‑TTTAGCAACACGAGACATTTTTtact > 1:1882193/1‑148 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACATTTATAGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTtcct > 1:177364/1‑148 (MQ=255) tCTGCATGTTTAACATCAACAGCATCGTTGAGAGTACGAGTAAGCTCGCCGTTTTTAACTTTTATACTAAAAAACATACCGTTTATTTTTAACTCAAACGCGGCACTAACAAAGACACGTGC‑TTTATCAACACCACACAATTTTtcct > 1:584499/1‑148 (MQ=255) cTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTGGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTtcctc < 2:200264/148‑1 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTtcctcc < 1:1131262/148‑1 (MQ=255) gCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCg > 2:452327/1‑148 (MQ=255) gTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACTTTTTTCGTAATAACCGGACCGTTGATTTTTTAGTCAACGCCCGCAGGAACAACCACCGGTGC‑TTTTGCAACACGAGACAATTTTTAATCCGATTa > 1:1837611/1‑148 (MQ=255) ttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGC‑GTTAGCAACACGAGACATTTTTTCCTCCGATTAgg > 1:2924512/1‑148 (MQ=255) tAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGc > 2:63750/1‑148 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAAAAACCAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGC‑ATTAGCAAAACGATACATTTTTTCCTCCGATTAGGCTa > 2:655802/1‑148 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTa > 2:2369965/1‑148 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACTGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGGGC‑TTTAGCAAAACGAGACAATTTTTCCGCCGATTAGGCTa > 2:1309725/1‑148 (MQ=255) tCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGt < 2:1938899/148‑1 (MQ=255) cAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAAAAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTa > 2:2985935/1‑148 (MQ=255) aaCAGCATCGTTGAGAGTACGCGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAg < 2:1997259/148‑1 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAg < 2:2276224/148‑1 (MQ=255) gCATCGTTTAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCTTAATAACCTGACGGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGa < 1:1371640/148‑1 (MQ=255) atggTTGTGAGTACGTGACAGCTCGCGTTTTTTACCTTTGATCGTATTAACCTGACCTTTTATTTTACCGACACCGCCGGCAGTAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATa < 1:3355660/145‑1 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCGGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATa < 1:2886375/148‑1 (MQ=255) tCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATCGTAAAAAACAGAACCTTGATTTTTAAGTCAAACCCGGCAGGAACAAACACCGGTGC‑TTTAGCAACACGAGACAATTTTTAATCCCATTAGGCTACGTAGCAGATaa > 1:3494058/1‑148 (MQ=255) tGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTc > 2:2940155/1‑148 (MQ=255) tGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATCGTAATAACCTTACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACCACCCGTGC‑TTTAGCAACAAGAGACATTTTTTCATCCGATTACGCTACGTAGCAGATAATTTc > 2:2940254/1‑148 (MQ=255) agagTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTACGATTAGGCTACGTAGCAGATAAATTAGc > 2:3021432/1‑148 (MQ=255) tCAGCTCGCCTTTTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGTAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAcc < 1:2070860/148‑1 (MQ=255) gCTCGCCGTTTTTACCTTTTATCGAAATAACCTGACCTTTTATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGc < 1:165610/148‑1 (MQ=255) gCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACCAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGc > 2:2235123/1‑148 (MQ=255) cTCGCCGTTTTGACCTGGGATCGTAATAACCTGACCGTTGATTTGTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 2:1846072/148‑1 (MQ=255) ttttttACGTTTGATCTTAATAACCTGACGGTTTATTTTTCCGACAACGCCGGCAGCAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgc < 1:1825771/147‑1 (MQ=255) ttttttACCTTGTATCGAAATACCCTGACCTTTGATTTTTACGACAACGCCGGCAGCAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgc < 1:1825766/147‑1 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg > 1:297892/1‑148 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg < 2:1074877/148‑1 (MQ=255) ttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc > 1:3353658/1‑148 (MQ=255) tttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt > 2:1116086/1‑148 (MQ=255) aCCTTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCa < 1:890302/148‑1 (MQ=255) aCCATTGATCGTAATAACCTGACCGTTGATTTTGACGTCAACGCCGGCAGGAACCACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCa < 2:527246/148‑1 (MQ=255) ccTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAAGACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCAc > 1:2642298/1‑148 (MQ=255) ttGATGGTAATACCCTGACGTTTTATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGAt < 1:2419573/148‑1 (MQ=255) ttGAGCGTAATAACCTGACGGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGTGCGCTGCACGAt < 1:2731197/148‑1 (MQ=255) tGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATc < 2:1197826/148‑1 (MQ=255) gATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCa < 2:1412166/148‑1 (MQ=255) | CATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGC‑TTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCA > CP009273/3439275‑3439569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |